Mitochondrial gene signature in the prefrontal cortex for differential susceptibility to chronic stress
Weger, Meltem, Alpern, Daniel, Cherix, Antoine, Ghosal, Sriparna, Grosse, Jocelyn, Russeil, Julie, Gruetter, Rolf, de Kloet, E. Ronald, Deplancke, Bart, Sandi, Carmen
Published in Scientific reports (27.10.2020)
Published in Scientific reports (27.10.2020)
Get full text
Journal Article
BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing
Alpern, Daniel, Gardeux, Vincent, Russeil, Julie, Mangeat, Bastien, Meireles-Filho, Antonio C A, Breysse, Romane, Hacker, David, Deplancke, Bart
Published in Genome Biology (19.04.2019)
Published in Genome Biology (19.04.2019)
Get full text
Journal Article
Mammalian adipogenesis regulator (Areg) cells use retinoic acid signalling to be non‐ and anti‐adipogenic in age‐dependent manner
Zachara, Magda, Rainer, Pernille Y, Hashimi, Horia, Russeil, Julie M, Alpern, Daniel, Ferrero, Radiana, Litovchenko, Maria, Deplancke, Bart
Published in The EMBO journal (15.09.2022)
Published in The EMBO journal (15.09.2022)
Get full text
Journal Article
Disparate temperature-dependent virus-host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium
V'kovski, Philip, Gultom, Mitra, Kelly, Jenna N, Steiner, Silvio, Russeil, Julie, Mangeat, Bastien, Cora, Elisa, Pezoldt, Joern, Holwerda, Melle, Kratzel, Annika, Laloli, Laura, Wider, Manon, Portmann, Jasmine, Tran, Thao, Ebert, Nadine, Stalder, Hanspeter, Hartmann, Rune, Gardeux, Vincent, Alpern, Daniel, Deplancke, Bart, Thiel, Volker, Dijkman, Ronald
Published in PLoS biology (29.03.2021)
Published in PLoS biology (29.03.2021)
Get full text
Journal Article
Deterministic scRNA-seq captures variation in intestinal crypt and organoid composition
Bues, Johannes, Biočanin, Marjan, Pezoldt, Joern, Dainese, Riccardo, Chrisnandy, Antonius, Rezakhani, Saba, Saelens, Wouter, Gardeux, Vincent, Gupta, Revant, Sarkis, Rita, Russeil, Julie, Saeys, Yvan, Amstad, Esther, Claassen, Manfred, Lutolf, Matthias P., Deplancke, Bart
Published in Nature methods (01.03.2022)
Published in Nature methods (01.03.2022)
Get full text
Journal Article
The Hippo pathway controls myofibril assembly and muscle fiber growth by regulating sarcomeric gene expression
Kaya-Çopur, Aynur, Marchiano, Fabio, Hein, Marco Y, Alpern, Daniel, Russeil, Julie, Luis, Nuno Miguel, Mann, Matthias, Deplancke, Bart, Habermann, Bianca H, Schnorrer, Frank
Published in eLife (06.01.2021)
Published in eLife (06.01.2021)
Get full text
Journal Article
ZFP30 promotes adipogenesis through the KAP1-mediated activation of a retrotransposon-derived Pparg2 enhancer
Chen, Wanze, Schwalie, Petra C., Pankevich, Eugenia V., Gubelmann, Carine, Raghav, Sunil K., Dainese, Riccardo, Cassano, Marco, Imbeault, Michael, Jang, Suk Min, Russeil, Julie, Delessa, Tenagne, Duc, Julien, Trono, Didier, Wolfrum, Christian, Deplancke, Bart
Published in Nature communications (18.04.2019)
Published in Nature communications (18.04.2019)
Get full text
Journal Article
A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation
Llimos, Gerard, Gardeux, Vincent, Koch, Ute, Kribelbauer, Judith F., Hafner, Antonina, Alpern, Daniel, Pezoldt, Joern, Litovchenko, Maria, Russeil, Julie, Dainese, Riccardo, Moia, Riccardo, Mahmoud, Abdurraouf Mokhtar, Rossi, Davide, Gaidano, Gianluca, Plass, Christoph, Lutsik, Pavlo, Gerhauser, Clarissa, Waszak, Sebastian M., Boettiger, Alistair, Radtke, Freddy, Deplancke, Bart
Published in Nature communications (19.04.2022)
Published in Nature communications (19.04.2022)
Get full text
Journal Article
Postnatal expansion of mesenteric lymph node stromal cells towards reticular and CD34+ stromal cell subsets
Pezoldt, Joern, Wiechers, Carolin, Zou, Mangge, Litovchenko, Maria, Biocanin, Marjan, Beckstette, Michael, Sitnik, Katarzyna, Palatella, Martina, van Mierlo, Guido, Chen, Wanze, Gardeux, Vincent, Floess, Stefan, Ebel, Maria, Russeil, Julie, Arampatzi, Panagiota, Vafardanejad, Ehsan, Saliba, Antoine-Emmanuel, Deplancke, Bart, Huehn, Jochen
Published in Nature communications (24.11.2022)
Published in Nature communications (24.11.2022)
Get full text
Journal Article
Systems-Genetics-Based Inference of a Core Regulatory Network Underlying White Fat Browning
Li, Yongguo, Schwalie, Petra C., Bast-Habersbrunner, Andrea, Mocek, Sabine, Russeil, Julie, Fromme, Tobias, Deplancke, Bart, Klingenspor, Martin
Published in Cell reports (Cambridge) (17.12.2019)
Published in Cell reports (Cambridge) (17.12.2019)
Get full text
Journal Article
Extensive tissue-specific expression variation and novel regulators underlying circadian behavior
Litovchenko, Maria, Meireles-Filho, Antonio C A, Frochaux, Michael V, Bevers, Roel P J, Prunotto, Alessio, Anduaga, Ane Martin, Hollis, Brian, Gardeux, Vincent, Braman, Virginie S, Russeil, Julie M C, Kadener, Sebastian, Dal Peraro, Matteo, Deplancke, Bart
Published in Science advances (29.01.2021)
Published in Science advances (29.01.2021)
Get full text
Journal Article
Dissecting the brown adipogenic regulatory network using integrative genomics
Pradhan, Rachana N., Bues, Johannes J., Gardeux, Vincent, Schwalie, Petra C., Alpern, Daniel, Chen, Wanze, Russeil, Julie, Raghav, Sunil K., Deplancke, Bart
Published in Scientific reports (09.02.2017)
Published in Scientific reports (09.02.2017)
Get full text
Journal Article
A Tead1-Apelin axis directs paracrine communication from myogenic to endothelial cells in skeletal muscle
Lee, Umji, Stuelsatz, Pascal, Karaz, Sonia, McKellar, David W., Russeil, Julie, Deak, Maria, De Vlaminck, Iwijn, Lepper, Christoph, Deplancke, Bart, Cosgrove, Benjamin D., Feige, Jerome N.
Published in iScience (15.07.2022)
Published in iScience (15.07.2022)
Get full text
Journal Article
Deterministic scRNA-seq captures variation in intestinal crypt and organoid composition
Bues, Johannes, Biočanin, Marjan, Pezoldt, Joern, Dainese, Riccardo, Chrisnandy, Antonius, Rezakhani, Saba, Saelens, Wouter, Gardeux, Vincent, Gupta, Revant, Sarkis, Rita, Russeil, Julie, Saeys, Yvan, Amstad, Esther, Claassen, Manfred, Lutolf, Matthias P., Deplancke, Bart
Published in Nature methods (01.03.2022)
Published in Nature methods (01.03.2022)
Get full text
Journal Article
A stromal cell population that inhibits adipogenesis in mammalian fat depots
Schwalie, Petra C., Dong, Hua, Zachara, Magda, Russeil, Julie, Alpern, Daniel, Akchiche, Nassila, Caprara, Christian, Sun, Wenfei, Schlaudraff, Kai-Uwe, Soldati, Gianni, Wolfrum, Christian, Deplancke, Bart
Published in Nature (London) (01.07.2018)
Published in Nature (London) (01.07.2018)
Get full text
Journal Article
Context transcription factors establish cooperative environments and mediate enhancer communication
Kribelbauer-Swietek, Judith F., Pushkarev, Olga, Gardeux, Vincent, Faltejskova, Katerina, Russeil, Julie, van Mierlo, Guido, Deplancke, Bart
Published in Nature genetics (01.10.2024)
Published in Nature genetics (01.10.2024)
Get full text
Journal Article
A human omentum-specific mesothelial-like stromal population inhibits adipogenesis through IGFBP2 secretion
Ferrero, Radiana, Rainer, Pernille Yde, Rumpler, Marie, Russeil, Julie, Zachara, Magda, Pezoldt, Joern, van Mierlo, Guido, Gardeux, Vincent, Saelens, Wouter, Alpern, Daniel, Favre, Lucie, Vionnet, Nathalie, Mantziari, Styliani, Zingg, Tobias, Pitteloud, Nelly, Suter, Michel, Matter, Maurice, Schlaudraff, Kai-Uwe, Canto, Carles, Deplancke, Bart
Published in Cell metabolism (02.07.2024)
Published in Cell metabolism (02.07.2024)
Get full text
Journal Article
Identification of methylation-sensitive human transcription factors using meSMiLE-seq
Gralak, Antoni J, Faltejskova, Katerina, Yang, Ally W H, Steiner, Clemence, Russeil, Julie, Grenningloh, Nadia, Inukai, Sachi, Demir, Mustafa, Dainese, Riccardo, Owen, Cooper, Pankevich, Eugenia, Hughes, Timothy R, Kulakovskiy, Ivan V, Kribelbauer-Swietek, Judith F, van Mierlo, Guido, Deplancke, Bart
Published in bioRxiv (12.11.2024)
Published in bioRxiv (12.11.2024)
Get full text
Journal Article
Paper
Mammalian adipogenesis regulators (Aregs) exhibit robust non- and anti-adipogenic properties that arise with age and involve retinoic acid signalling
Zachara, Magda, Rainer, Pernille Y, Russeil, Julie M, Hashimi, Horia, Alpern, Daniel, Ferrero, Radiana, Litovchenko, Maria, Deplancke, Bart
Published in bioRxiv (24.02.2021)
Published in bioRxiv (24.02.2021)
Get full text
Paper