Gene expression profiling of whole blood in ipilimumab-treated patients for identification of potential biomarkers of immune-related gastrointestinal adverse events
Shahabi, Vafa, Berman, David, Chasalow, Scott D, Wang, Lisu, Tsuchihashi, Zenta, Hu, Beihong, Panting, Lisa, Jure-Kunkel, Maria, Ji, Rui-Ru
Published in Journal of translational medicine (22.03.2013)
Published in Journal of translational medicine (22.03.2013)
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Journal Article
Abatacept Inhibition of T Cell Priming in Mice by Induction of a Unique Transcriptional Profile That Reduces Their Ability to Activate Antigen‐Presenting Cells
Patakas, Agapitos, Ji, Rui‐Ru, Weir, William, Connolly, Sean E., Benson, Robert A., Nadler, Steven G., Brewer, James M., McInnes, Iain B., Garside, Paul
Published in Arthritis & rheumatology (Hoboken, N.J.) (01.03.2016)
Published in Arthritis & rheumatology (Hoboken, N.J.) (01.03.2016)
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Journal Article
BNT162b2 Vaccine Encoding the SARS-CoV-2 P2 S Protects Transgenic hACE2 Mice against COVID-19
Ji, Rui-Ru, Qu, Yajin, Zhu, Hua, Yang, Yumei, Vogel, Annette B, Sahin, Ugur, Qin, Chuan, Hui, Aimin
Published in Vaccines (Basel) (01.04.2021)
Published in Vaccines (Basel) (01.04.2021)
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Journal Article
An immune-active tumor microenvironment favors clinical response to ipilimumab
Ji, Rui-Ru, Chasalow, Scott D., Wang, Lisu, Hamid, Omid, Schmidt, Henrik, Cogswell, John, Alaparthy, Suresh, Berman, David, Jure-Kunkel, Maria, Siemers, Nathan O., Jackson, Jeffrey R., Shahabi, Vafa
Published in Cancer Immunology, Immunotherapy (01.07.2012)
Published in Cancer Immunology, Immunotherapy (01.07.2012)
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Journal Article
Functional characterization of 105 factor H variants associated with aHUS: lessons for variant classification
Martín Merinero, Hector, Zhang, Yuzhou, Arjona, Emilia, del Angel, Guillermo, Goodfellow, Renee, Gomez-Rubio, Elena, Ji, Rui-Ru, Michelena, Malkoa, Smith, Richard J.H., Rodríguez de Córdoba, Santiago
Published in Blood (02.12.2021)
Published in Blood (02.12.2021)
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Journal Article
Transcriptional profiling of the dose response: a more powerful approach for characterizing drug activities
Ji, Rui-Ru, de Silva, Heshani, Jin, Yisheng, Bruccoleri, Robert E, Cao, Jian, He, Aiqing, Huang, Wenjun, Kayne, Paul S, Neuhaus, Isaac M, Ott, Karl-Heinz, Penhallow, Becky, Cockett, Mark I, Neubauer, Michael G, Siemers, Nathan O, Ross-Macdonald, Petra
Published in PLoS computational biology (01.09.2009)
Published in PLoS computational biology (01.09.2009)
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Journal Article
Phase 1 study to determine the safety and dosing of autologous PBMCs modified to present HPV16 antigens (SQZ-PBMC-HPV) in HLA-A02+ patients with HPV16+ solid tumors
Jimeno, Antonio, Baranda, Joaquina, Iams, Wade T., Park, Jong Chul, Mita, Monica, Gordon, Michael S., Taylor, Matthew, Dhani, Neesha, Leal, Alexis D., Neupane, Prakash, Eng, Cathy, Yeku, Oladapo, Mita, Alain, Moser, Justin C., Butler, Marcus, Loughhead, Scott M., Jennings, Julia, Miselis, Nathan R., Ji, Rui-Ru, Nair, Nitya, Kornacker, Martin, Zwirtes, Ricardo F., Bernstein, Howard, Sharei, Armon
Published in Investigational new drugs (01.04.2023)
Published in Investigational new drugs (01.04.2023)
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Journal Article
Complement activation in the peripheral nervous system following the spinal nerve ligation model of neuropathic pain
Levin, Margaret E., Jin, Jason G., Ji, Rui-Ru, Tong, Jeifei, Pomonis, James D., Lavery, Daniel J., Miller, Scott W., Chiang, Lillian W.
Published in Pain (Amsterdam) (30.06.2008)
Published in Pain (Amsterdam) (30.06.2008)
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Journal Article
Construction of a reference gene association network from multiple profiling data: application to data analysis
Ucar, Duygu, Neuhaus, Isaac, Ross-MacDonald, Petra, Tilford, Charles, Parthasarathy, Srinivasan, Siemers, Nathan, Ji, Rui-Ru
Published in Bioinformatics (15.10.2007)
Published in Bioinformatics (15.10.2007)
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Journal Article
SDRS—an algorithm for analyzing large-scale dose–response data
Ji, Rui-Ru, Siemers, Nathan O, Lei, Ming, Schweizer, Liang, Bruccoleri, Robert E
Published in Bioinformatics (15.10.2011)
Published in Bioinformatics (15.10.2011)
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Journal Article
3061: Gut microbiome and gene expression changes during a Phase 1 trial of enadenotucirev and radiotherapy
Hillson, Lily V., Johnson, Jethro, Ji, Rui Ru, Rosen, Oliver, Qiao, Yu, Ooms, Alex, Maughan, Timothy S., Roxburgh, Campbell S., Hawkins, Maria, O'Cathail, Sean M.
Published in Radiotherapy and oncology (01.05.2024)
Published in Radiotherapy and oncology (01.05.2024)
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Journal Article
Novel NAGLU variants associated with MPS IIIB and in vitro analysis of residual enzymatic activities
Ji, Rui-Ru, Whitley, Chester B., Escolar, Maria L., Vijay, Suresh, Wijburg, Frits A., Giugliani, Roberto, Hutchinson, Andrew, Jain, Nina, Forbes, Chris, Bubb, Gillian, Patki, Kiran C.
Published in Molecular genetics and metabolism (01.01.2017)
Published in Molecular genetics and metabolism (01.01.2017)
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Journal Article
Abstract CT241: ENVOY-001: A phase 1, multicenter, open-label study of SQZ-AAC-HPV as monotherapy and in combination with immune checkpoint inhibitors in HLA-A02+ patients with HPV16+ recurrent, locally advanced, or metastatic solid tumors
Villaflor, Victoria, Veluswamy, Rajwanth, Garralda, Elena, Maziarz, Richard, Zsiros, Emese, Shields, Anthony, Ponz-Sarvise, Mariano, Lolkema, Martijn, Brahmi, Mehdi, Jennings, Julia, Miselis, Nathan, Moore, Lindsay, Blagovic, Katarina, Ji, Rui-Ru, Loughhead, Scott, Zwirtes, Ricardo, Patel, Sandip
Published in Cancer research (Chicago, Ill.) (15.06.2022)
Published in Cancer research (Chicago, Ill.) (15.06.2022)
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Journal Article
University of Pennsylvania 5th annual conference on statistical issues in Clinical Trials: Emerging statistical issues in biomarker validation (afternoon session)
Rubin, Eric, LaVange, Lisa, DeGruttola, Victor
Published in Clinical trials (London, England) (01.10.2013)
Published in Clinical trials (London, England) (01.10.2013)
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Journal Article
Conference Proceeding
FDR-FET: an optimizing gene set enrichment analysis method
Rui-Ru Ji, Karl-Heinz Ott, Roumyana Yordanova
Published in Advances and applications in bioinformatics and chemistry (01.03.2011)
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Published in Advances and applications in bioinformatics and chemistry (01.03.2011)
Journal Article
Transcriptional Profiling of the Dose Response: A More Powerful Approach for Characterizing Drug Activities: e1000512
Ji, Rui-Ru, Silva, Heshani de, Jin, Yisheng, Bruccoleri, Robert E, Cao, Jian, He, Aiqing, Huang, Wenjun, Kayne, Paul S, Neuhaus, Isaac M, Ott, Karl-Heinz, Penhallow, Becky, Cockett, Mark I, Neubauer, Michael G, Siemers, Nathan O, Ross-Macdonald, Petra
Published in PLoS computational biology (01.09.2009)
Published in PLoS computational biology (01.09.2009)
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