ImageJ2: ImageJ for the next generation of scientific image data
Rueden, Curtis T, Schindelin, Johannes, Hiner, Mark C, DeZonia, Barry E, Walter, Alison E, Arena, Ellen T, Eliceiri, Kevin W
Published in BMC bioinformatics (29.11.2017)
Published in BMC bioinformatics (29.11.2017)
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Journal Article
The ImageJ ecosystem: An open platform for biomedical image analysis
Schindelin, Johannes, Rueden, Curtis T., Hiner, Mark C., Eliceiri, Kevin W.
Published in Molecular reproduction and development (01.07.2015)
Published in Molecular reproduction and development (01.07.2015)
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Journal Article
Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification
Arganda-Carreras, Ignacio, Kaynig, Verena, Rueden, Curtis, Eliceiri, Kevin W, Schindelin, Johannes, Cardona, Albert, Sebastian Seung, H
Published in Bioinformatics (Oxford, England) (01.08.2017)
Published in Bioinformatics (Oxford, England) (01.08.2017)
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Journal Article
Assessing microscope image focus quality with deep learning
Yang, Samuel J, Berndl, Marc, Michael Ando, D, Barch, Mariya, Narayanaswamy, Arunachalam, Christiansen, Eric, Hoyer, Stephan, Roat, Chris, Hung, Jane, Rueden, Curtis T, Shankar, Asim, Finkbeiner, Steven, Nelson, Philip
Published in BMC bioinformatics (15.03.2018)
Published in BMC bioinformatics (15.03.2018)
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Journal Article
Scientific Community Image Forum: A discussion forum for scientific image software
Rueden, Curtis T, Ackerman, Jeanelle, Arena, Ellen T, Eglinger, Jan, Cimini, Beth A, Goodman, Allen, Carpenter, Anne E, Eliceiri, Kevin W
Published in PLoS biology (19.06.2019)
Published in PLoS biology (19.06.2019)
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Journal Article
Metadata matters: access to image data in the real world
Linkert, Melissa, Rueden, Curtis T, Allan, Chris, Burel, Jean-Marie, Moore, Will, Patterson, Andrew, Loranger, Brian, Moore, Josh, Neves, Carlos, MacDonald, Donald, Tarkowska, Aleksandra, Sticco, Caitlin, Hill, Emma, Rossner, Mike, Eliceiri, Kevin W, Swedlow, Jason R
Published in The Journal of cell biology (31.05.2010)
Published in The Journal of cell biology (31.05.2010)
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Journal Article
FLIMJ: An open-source ImageJ toolkit for fluorescence lifetime image data analysis
Gao, Dasong, Barber, Paul R, Chacko, Jenu V, Kader Sagar, Md Abdul, Rueden, Curtis T, Grislis, Aivar R, Hiner, Mark C, Eliceiri, Kevin W
Published in PloS one (30.12.2020)
Published in PloS one (30.12.2020)
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Journal Article
Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software
KAMENTSKY, Lee, JONAS, Thouis R, FRAMER, Adam, BRAY, Mark-Anthony, LOGAN, David J, MADDEN, Katherine L, LJOSA, Vebjorn, RUEDEN, Curtis, ELICEIRI, Kevin W, CARPENTER, Anne E
Published in Bioinformatics (15.04.2011)
Published in Bioinformatics (15.04.2011)
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Journal Article
PyImageJ: A library for integrating ImageJ and Python
Rueden, Curtis T., Hiner, Mark C., Evans, Edward L., Pinkert, Michael A., Lucas, Alice M., Carpenter, Anne E., Cimini, Beth A., Eliceiri, Kevin W.
Published in Nature methods (01.11.2022)
Published in Nature methods (01.11.2022)
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Journal Article
napari-imagej: ImageJ ecosystem access from napari
Selzer, Gabriel J., Rueden, Curtis T., Hiner, Mark C., Evans, Edward L., Harrington, Kyle I. S., Eliceiri, Kevin W.
Published in Nature methods (01.10.2023)
Published in Nature methods (01.10.2023)
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Journal Article
ImageJ-MATLAB: a bidirectional framework for scientific image analysis interoperability
Hiner, Mark C, Rueden, Curtis T, Eliceiri, Kevin W
Published in Bioinformatics (Oxford, England) (15.02.2017)
Published in Bioinformatics (Oxford, England) (15.02.2017)
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Journal Article
Collagen density promotes mammary tumor initiation and progression
Provenzano, Paolo P, Inman, David R, Eliceiri, Kevin W, Knittel, Justin G, Yan, Long, Rueden, Curtis T, White, John G, Keely, Patricia J
Published in BMC medicine (28.04.2008)
Published in BMC medicine (28.04.2008)
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Journal Article
SciJava Ops: an improved algorithms framework for Fiji and beyond
Selzer, Gabriel J, Rueden, Curtis T, Hiner, Mark C, Evans, Edward L, Kolb, David, Wiedenmann, Marcel, Birkhold, Christian, Buchholz, Tim-Oliver, Helfrich, Stefan, Northan, Brian, Walter, Alison, Schindelin, Johannes, Pietzsch, Tobias, Saalfeld, Stephan, Berthold, Michael R, Eliceiri, Kevin W
Published in Frontiers in bioinformatics (27.09.2024)
Published in Frontiers in bioinformatics (27.09.2024)
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Journal Article
Integration of the ImageJ Ecosystem in KNIME Analytics Platform
Dietz, Christian, Rueden, Curtis T., Helfrich, Stefan, Dobson, Ellen T. A., Horn, Martin, Eglinger, Jan, Evans, Edward L., McLean, Dalton T., Novitskaya, Tatiana, Ricke, William A., Sherer, Nathan M., Zijlstra, Andries, Berthold, Michael R., Eliceiri, Kevin W.
Published in Frontiers in computer science (Lausanne) (17.03.2020)
Published in Frontiers in computer science (Lausanne) (17.03.2020)
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Journal Article