Control of false discoveries in grouped hypothesis testing for eQTL data
Rudra, Pratyaydipta, Zhou, Yi-Hui, Nobel, Andrew, Wright, Fred A
Published in BMC bioinformatics (11.04.2024)
Published in BMC bioinformatics (11.04.2024)
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Journal Article
Minimizing Batch Effects in Mass Cytometry Data
Schuyler, Ronald P, Jackson, Conner, Garcia-Perez, Josselyn E, Baxter, Ryan M, Ogolla, Sidney, Rochford, Rosemary, Ghosh, Debashis, Rudra, Pratyaydipta, Hsieh, Elena W Y
Published in Frontiers in immunology (15.10.2019)
Published in Frontiers in immunology (15.10.2019)
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Journal Article
Eya3 partners with PP2A to induce c-Myc stabilization and tumor progression
Zhang, Lingdi, Zhou, Hengbo, Li, Xueni, Vartuli, Rebecca L, Rowse, Michael, Xing, Yongna, Rudra, Pratyaydipta, Ghosh, Debashis, Zhao, Rui, Ford, Heide L
Published in Nature communications (13.03.2018)
Published in Nature communications (13.03.2018)
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Journal Article
Insight into genetic regulation of miRNA in mouse brain
Kordas, Gordon, Rudra, Pratyaydipta, Hendricks, Audrey, Saba, Laura, Kechris, Katerina
Published in BMC genomics (13.11.2019)
Published in BMC genomics (13.11.2019)
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Journal Article
Impaired B cell function during viral infections due to PTEN-mediated inhibition of the PI3K pathway
Getahun, Andrew, Wemlinger, Scott M, Rudra, Pratyaydipta, Santiago, Mario L, van Dyk, Linda F, Cambier, John C
Published in The Journal of experimental medicine (03.04.2017)
Published in The Journal of experimental medicine (03.04.2017)
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Journal Article
Predictive modeling of miRNA-mediated predisposition to alcohol-related phenotypes in mouse
Rudra, Pratyaydipta, Shi, Wen J, Russell, Pamela, Vestal, Brian, Tabakoff, Boris, Hoffman, Paula, Kechris, Katerina, Saba, Laura
Published in BMC genomics (29.08.2018)
Published in BMC genomics (29.08.2018)
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Journal Article
Systems genetics analysis of the LXS recombinant inbred mouse strains:Genetic and molecular insights into acute ethanol tolerance
Radcliffe, Richard A, Dowell, Robin, Odell, Aaron T, Richmond, Phillip A, Bennett, Beth, Larson, Colin, Kechris, Katerina, Saba, Laura M, Rudra, Pratyaydipta, Wen, Shi
Published in PloS one (23.10.2020)
Published in PloS one (23.10.2020)
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Journal Article
Fecal microbiota composition, serum metabolomics, and markers of inflammation in dogs fed a raw meat-based diet compared to those on a kibble diet
Hiney, Kris, Sypniewski, Lara, DeSilva, Udaya, Pezeshki, Adel, Rudra, Pratyaydipta, Goodarzi, Parniyan, Willis, Erin, McFarlane, Dianne
Published in Frontiers in veterinary science (17.04.2024)
Published in Frontiers in veterinary science (17.04.2024)
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Journal Article
Expansion of extrafollicular B and T cell subsets in childhood-onset systemic lupus erythematosus
Baxter, Ryan M, Wang, Christine S, Garcia-Perez, Josselyn E, Kong, Daniel S, Coleman, Brianne M, Larchenko, Valentyna, Schuyler, Ronald P, Jackson, Conner, Ghosh, Tusharkanti, Rudra, Pratyaydipta, Paul, Debdas, Claassen, Manfred, Rochford, Rosemary, Cambier, John C, Ghosh, Debashis, Cooper, Jennifer C, Smith, Mia J, Hsieh, Elena W Y
Published in Frontiers in immunology (27.10.2023)
Published in Frontiers in immunology (27.10.2023)
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Journal Article
miR-MaGiC improves quantification accuracy for small RNA-seq
Russell, Pamela H, Vestal, Brian, Shi, Wen, Rudra, Pratyaydipta D, Dowell, Robin, Radcliffe, Richard, Saba, Laura, Kechris, Katerina
Published in BMC research notes (15.05.2018)
Published in BMC research notes (15.05.2018)
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Journal Article
Author Correction: Eya3 partners with PP2A to induce c-Myc stabilization and tumor progression
Zhang, Lingdi, Zhou, Hengbo, Li, Xueni, Vartuli, Rebecca L., Rowse, Michael, Xing, Yongna, Rudra, Pratyaydipta, Ghosh, Debashis, Zhao, Rui, Ford, Heide L.
Published in Nature communications (17.09.2018)
Published in Nature communications (17.09.2018)
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Journal Article
Clinical health markers in dogs fed raw meat-based or commercial extruded kibble diets
Hiney, Kristina, Sypniewski, Lara, Rudra, Pratyaydipta, Pezeshki, Adel, McFarlane, Dianne
Published in Journal of animal science (01.06.2021)
Published in Journal of animal science (01.06.2021)
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Journal Article
Healing time of experimentally induced distal limb wounds in horses is not reduced by local injection of equine-origin liquid amnion allograft
Duddy, Hugh R., Schoonover, Mike J., Williams, Megan R., Rudra, Pratyaydipta
Published in American journal of veterinary research (01.08.2022)
Published in American journal of veterinary research (01.08.2022)
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Journal Article
SIX2 Mediates Late-Stage Metastasis via Direct Regulation of SOX2 and Induction of a Cancer Stem Cell Program
Oliphant, Michael U J, Vincent, Melanie Y, Galbraith, Matthew D, Pandey, Ahwan, Zaberezhnyy, Vadym, Rudra, Pratyaydipta, Johnson, Katherine R, Costello, James C, Ghosh, Debashis, DeGregori, James, Espinosa, Joaquin M, Ford, Heide L
Published in Cancer research (Chicago, Ill.) (15.02.2019)
Published in Cancer research (Chicago, Ill.) (15.02.2019)
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Journal Article
Unsupervised discovery of phenotype-specific multi-omics networks
Shi, W Jenny, Zhuang, Yonghua, Russell, Pamela H, Hobbs, Brian D, Parker, Margaret M, Castaldi, Peter J, Rudra, Pratyaydipta, Vestal, Brian, Hersh, Craig P, Saba, Laura M, Kechris, Katerina
Published in Bioinformatics (01.11.2019)
Published in Bioinformatics (01.11.2019)
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Journal Article
Eya3 promotes breast tumor-associated immune suppression via threonine phosphatase-mediated PD-L1 upregulation
Vartuli, Rebecca L, Zhou, Hengbo, Zhang, Lingdi, Powers, Rani K, Klarquist, Jared, Rudra, Pratyaydipta, Vincent, Melanie Y, Ghosh, Debashis, Costello, James C, Kedl, Ross M, Slansky, Jill E, Zhao, Rui, Ford, Heide L
Published in The Journal of clinical investigation (01.06.2018)
Published in The Journal of clinical investigation (01.06.2018)
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Journal Article
Structural and Functional Analyses of an Allosteric EYA2 Phosphatase Inhibitor That Has On-Target Effects in Human Lung Cancer Cells
Anantharajan, Jothi, Zhou, Hengbo, Zhang, Lingdi, Hotz, Taylor, Vincent, Melanie Y, Blevins, Melanie A, Jansson, Anna E, Kuan, John Wee Liang, Ng, Elizabeth Yihui, Yeo, Yee Khoon, Baburajendran, Nithya, Lin, Grace, Hung, Alvin W, Joy, Joma, Patnaik, Samarjit, Marugan, Juan, Rudra, Pratyaydipta, Ghosh, Debashis, Hill, Jeffrey, Keller, Thomas H, Zhao, Rui, Ford, Heide L, Kang, CongBao
Published in Molecular cancer therapeutics (01.09.2019)
Published in Molecular cancer therapeutics (01.09.2019)
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Journal Article