Comprehensive Analysis of Protein Digestion Using Six Trypsins Reveals the Origin of Trypsin As a Significant Source of Variability in Proteomics
Walmsley, Scott J, Rudnick, Paul A, Liang, Yuxue, Dong, Qian, Stein, Stephen E, Nesvizhskii, Alexey I
Published in Journal of proteome research (06.12.2013)
Published in Journal of proteome research (06.12.2013)
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Journal Article
Proteome Analysis of Microdissected Formalin-fixed and Paraffin-embedded Tissue Specimens
Guo, Tong, Wang, Weijie, Rudnick, Paul A, Song, Tao, Li, Jie, Zhuang, Zhengping, Weil, Robert J, DeVoe, Don L, Lee, Cheng S, Balgley, Brian M
Published in The journal of histochemistry and cytochemistry (01.07.2007)
Published in The journal of histochemistry and cytochemistry (01.07.2007)
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Journal Article
Interlaboratory studies and initiatives developing standards for proteomics
Ivanov, Alexander R., Colangelo, Christopher M., Dufresne, Craig P., Friedman, David B., Lilley, Kathryn S., Mechtler, Karl, Phinney, Brett S., Rose, Kristie L., Rudnick, Paul A., Searle, Brian C., Shaffer, Scott A., Weintraub, Susan T.
Published in Proteomics (Weinheim) (01.03.2013)
Published in Proteomics (Weinheim) (01.03.2013)
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Journal Article
Metabolite Profiling of a NIST Standard Reference Material for Human Plasma (SRM 1950): GC-MS, LC-MS, NMR, and Clinical Laboratory Analyses, Libraries, and Web-Based Resources
Simón-Manso, Yamil, Lowenthal, Mark S, Kilpatrick, Lisa E, Sampson, Maureen L, Telu, Kelly H, Rudnick, Paul A, Mallard, W. Gary, Bearden, Daniel W, Schock, Tracey B, Tchekhovskoi, Dmitrii V, Blonder, Niksa, Yan, Xinjian, Liang, Yuxue, Zheng, Yufang, Wallace, William E, Neta, Pedatsur, Phinney, Karen W, Remaley, Alan T, Stein, Stephen E
Published in Analytical chemistry (Washington) (17.12.2013)
Published in Analytical chemistry (Washington) (17.12.2013)
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Journal Article
A Description of the Clinical Proteomic Tumor Analysis Consortium (CPTAC) Common Data Analysis Pipeline
Rudnick, Paul A, Markey, Sanford P, Roth, Jeri, Mirokhin, Yuri, Yan, Xinjian, Tchekhovskoi, Dmitrii V, Edwards, Nathan J, Thangudu, Ratna R, Ketchum, Karen A, Kinsinger, Christopher R, Mesri, Mehdi, Rodriguez, Henry, Stein, Stephen E
Published in Journal of proteome research (04.03.2016)
Published in Journal of proteome research (04.03.2016)
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Journal Article
Quantitative Mass Spectrometry to Interrogate Proteomic Heterogeneity in Metastatic Lung Adenocarcinoma and Validate a Novel Somatic Mutation CDK12-G879V[S]
Zhang, Xu, Nguyen, Khoa Dang, Rudnick, Paul A., Roper, Nitin, Kawaler, Emily, Maity, Tapan K., Awasthi, Shivangi, Gao, Shaojian, Biswas, Romi, Venugopalan, Abhilash, Cultraro, Constance M., Fenyö, David, Guha, Udayan
Published in Molecular & cellular proteomics (01.04.2019)
Published in Molecular & cellular proteomics (01.04.2019)
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Journal Article
Repeatability and Reproducibility in Proteomic Identifications by Liquid Chromatography−Tandem Mass Spectrometry
Tabb, David L, Vega-Montoto, Lorenzo, Rudnick, Paul A, Variyath, Asokan Mulayath, Ham, Amy-Joan L, Bunk, David M, Kilpatrick, Lisa E, Billheimer, Dean D, Blackman, Ronald K, Cardasis, Helene L, Carr, Steven A, Clauser, Karl R, Jaffe, Jacob D, Kowalski, Kevin A, Neubert, Thomas A, Regnier, Fred E, Schilling, Birgit, Tegeler, Tony J, Wang, Mu, Wang, Pei, Whiteaker, Jeffrey R, Zimmerman, Lisa J, Fisher, Susan J, Gibson, Bradford W, Kinsinger, Christopher R, Mesri, Mehdi, Rodriguez, Henry, Stein, Stephen E, Tempst, Paul, Paulovich, Amanda G, Liebler, Daniel C, Spiegelman, Cliff
Published in Journal of proteome research (05.02.2010)
Published in Journal of proteome research (05.02.2010)
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Journal Article
Characterization of the Human Salivary Proteome by Capillary Isoelectric Focusing/Nanoreversed-Phase Liquid Chromatography Coupled with ESI-Tandem MS
Guo, Tong, Rudnick, Paul A, Wang, Weijie, Lee, Cheng S, DeVoe, Don L, Balgley, Brian M
Published in Journal of proteome research (01.06.2006)
Published in Journal of proteome research (01.06.2006)
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Journal Article
Tandem Mass Spectral Libraries of Peptides in Digests of Individual Proteins: Human Serum Albumin (HSA)
Dong, Qian, Yan, Xinjian, Kilpatrick, Lisa E., Liang, Yuxue, Mirokhin, Yuri A., Roth, Jeri S., Rudnick, Paul A., Stein, Stephen E.
Published in Molecular & cellular proteomics (01.09.2014)
Published in Molecular & cellular proteomics (01.09.2014)
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Journal Article
Interlaboratory Study Characterizing a Yeast Performance Standard for Benchmarking LC-MS Platform Performance
Paulovich, Amanda G., Billheimer, Dean, Ham, Amy-Joan L., Vega-Montoto, Lorenzo, Rudnick, Paul A., Tabb, David L., Wang, Pei, Blackman, Ronald K., Bunk, David M., Cardasis, Helene L., Clauser, Karl R., Kinsinger, Christopher R., Schilling, Birgit, Tegeler, Tony J., Variyath, Asokan Mulayath, Wang, Mu, Whiteaker, Jeffrey R., Zimmerman, Lisa J., Fenyo, David, Carr, Steven A., Fisher, Susan J., Gibson, Bradford W., Mesri, Mehdi, Neubert, Thomas A., Regnier, Fred E., Rodriguez, Henry, Spiegelman, Cliff, Stein, Stephen E., Tempst, Paul, Liebler, Daniel C.
Published in Molecular & cellular proteomics (01.02.2010)
Published in Molecular & cellular proteomics (01.02.2010)
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Journal Article
glnD and mviN Are Genes of an Essential Operon in Sinorhizobium meliloti
Rudnick, P A, Arcondéguy, T, Kennedy, C K, Kahn, D
Published in Journal of Bacteriology (01.04.2001)
Published in Journal of Bacteriology (01.04.2001)
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Journal Article
Combined Blood/Tissue Analysis for Cancer Biomarker Discovery: Application to Renal Cell Carcinoma
Johann, Donald J, Wei, Bih-Rong, Prieto, DaRue A, Chan, King C, Ye, Xiaying, Valera, Vladimir A, Simpson, R. Mark, Rudnick, Paul A, Xiao, Zhen, Issaq, Haleem J, Linehan, W. Marston, Stein, Stephen E, Veenstra, Timothy D, Blonder, Josip
Published in Analytical chemistry (Washington) (01.03.2010)
Published in Analytical chemistry (Washington) (01.03.2010)
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Journal Article
Developing qualitative LC-MS methods for characterization of Vaccinium berry Standard Reference Materials
Lowenthal, Mark S., Phillips, Melissa M., Rimmer, Catherine A., Rudnick, Paul A., Simón-Manso, Yamil, Stein, Stephen E., Tchekhovskoi, Dmitrii, Phinney, Karen W.
Published in Analytical and bioanalytical chemistry (01.05.2013)
Published in Analytical and bioanalytical chemistry (01.05.2013)
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Journal Article
Membrane Proteome Analysis of Microdissected Ovarian Tumor Tissues Using Capillary Isoelectric Focusing/Reversed-Phase Liquid Chromatography−Tandem MS
Wang, Weijie, Guo, Tong, Rudnick, Paul A, Song, Tao, Li, Jie, Zhuang, Zhengping, Zheng, Wenxin, DeVoe, Don L, Lee, Cheng S, Balgley, Brian M
Published in Analytical chemistry (Washington) (01.02.2007)
Published in Analytical chemistry (Washington) (01.02.2007)
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Journal Article
Proteome Analysis of Microdissected Tumor Tissue Using a Capillary Isoelectric Focusing-Based Multidimensional Separation Platform Coupled with ESI-Tandem MS
Wang, Yueju, Rudnick, Paul A, Evans, Erin L, Li, Jie, Zhuang, Zhengping, DeVoe, Don L, Lee, Cheng S, Balgley, Brian M
Published in Analytical chemistry (Washington) (15.10.2005)
Published in Analytical chemistry (Washington) (15.10.2005)
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Journal Article
Effects of chromatography conditions on intact protein separations for top-down proteomics
Wang, Yueju, Balgley, Brian M., Rudnick, Paul A., Lee, Cheng S.
Published in Journal of Chromatography A (06.05.2005)
Published in Journal of Chromatography A (06.05.2005)
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Journal Article
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