Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds
Naval-Sanchez, Marina, Nguyen, Quan, McWilliam, Sean, Porto-Neto, Laercio R., Tellam, Ross, Vuocolo, Tony, Reverter, Antonio, Perez-Enciso, Miguel, Brauning, Rudiger, Clarke, Shannon, McCulloch, Alan, Zamani, Wahid, Naderi, Saeid, Rezaei, Hamid Reza, Pompanon, Francois, Taberlet, Pierre, Worley, Kim C., Gibbs, Richard A., Muzny, Donna M., Jhangiani, Shalini N., Cockett, Noelle, Daetwyler, Hans, Kijas, James
Published in Nature communications (28.02.2018)
Published in Nature communications (28.02.2018)
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Journal Article
A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling
Hess, Melanie K, Rowe, Suzanne J, Van Stijn, Tracey C, Henry, Hannah M, Hickey, Sharon M, Brauning, Rudiger, McCulloch, Alan F, Hess, Andrew S, Kirk, Michelle R, Kumar, Sandeep, Pinares-Patiño, Cesar, Kittelmann, Sandra, Wood, Graham R, Janssen, Peter H, McEwan, John C
Published in PloS one (03.04.2020)
Published in PloS one (03.04.2020)
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Journal Article
Genome wide association study for growth in Pakistani dromedary camels using genotyping-by-sequencing
Sabahat, Sajida, Nadeem, Asif, Brauning, Rudiger, Thomson, Peter C, Khatkar, Mehar S
Published in Animal Bioscience (01.07.2023)
Published in Animal Bioscience (01.07.2023)
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Journal Article
Genome-wide DNA methylation patterns and transcription analysis in sheep muscle
Couldrey, Christine, Brauning, Rudiger, Bracegirdle, Jeremy, Maclean, Paul, Henderson, Harold V, McEwan, John C
Published in PloS one (10.07.2014)
Published in PloS one (10.07.2014)
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Journal Article
Large-scale analysis of sheep rumen metagenome profiles captured by reduced representation sequencing reveals individual profiles are influenced by the environment and genetics of the host
Hess, Melanie K, Hodgkinson, Hannah E, Hess, Andrew S, Zetouni, Larissa, Budel, Juliana C. C, Henry, Hannah, Donaldson, Alistair, Bilton, Timothy P, van Stijn, Tracey C, Kirk, Michelle R, Dodds, Ken G, Brauning, Rudiger, McCulloch, Alan F, Hickey, Sharon M, Johnson, Patricia L, Jonker, Arjan, Morton, Nickolas, Hendy, Shaun, Oddy, V. Hutton, Janssen, Peter H, McEwan, John C, Rowe, Suzanne J
Published in BMC genomics (18.09.2023)
Published in BMC genomics (18.09.2023)
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Journal Article
Genomic signatures of inbreeding in a critically endangered parrot, the kākāpō
Foster, Yasmin, Dutoit, Ludovic, Grosser, Stefanie, Dussex, Nicolas, Foster, Brodie J, Dodds, Ken G, Brauning, Rudiger, Van Stijn, Tracey, Robertson, Fiona, McEwan, John C, Jacobs, Jeanne M E, Robertson, Bruce C
Published in G3 : genes - genomes - genetics (19.10.2021)
Published in G3 : genes - genomes - genetics (19.10.2021)
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Journal Article
Combining host and rumen metagenome profiling for selection in sheep: prediction of methane, feed efficiency, production, and health traits
Hess, Melanie K, Zetouni, Larissa, Hess, Andrew S, Budel, Juliana, Dodds, Ken G, Henry, Hannah M, Brauning, Rudiger, McCulloch, Alan F, Hickey, Sharon M, Johnson, Patricia L, Elmes, Sara, Wing, Janine, Bryson, Brooke, Knowler, Kevin, Hyndman, Dianne, Baird, Hayley, McRae, Kathryn M, Jonker, Arjan, Janssen, Peter H, McEwan, John C, Rowe, Suzanne J
Published in Genetics selection evolution (Paris) (25.07.2023)
Published in Genetics selection evolution (Paris) (25.07.2023)
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Journal Article
Traces of Human-Mediated Selection in the Gene Pool of Red Deer Populations
Moravčíková, Nina, Kasarda, Radovan, Židek, Radoslav, McEwan, John Colin, Brauning, Rudiger, Landete-Castillejos, Tomás, Chonco, Louis, Ciberej, Juraj, Pokorádi, Jaroslav
Published in Animals (Basel) (04.08.2023)
Published in Animals (Basel) (04.08.2023)
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Journal Article
Hitchhiking Mapping of Candidate Regions Associated with Fat Deposition in Iranian Thin and Fat Tail Sheep Breeds Suggests New Insights into Molecular Aspects of Fat Tail Selection
Moradi, Mohammad Hossein, Nejati-Javaremi, Ardeshir, Moradi-Shahrbabak, Mohammad, Dodds, Ken G, Brauning, Rudiger, McEwan, John C
Published in Animals (Basel) (31.05.2022)
Published in Animals (Basel) (31.05.2022)
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Journal Article
Application of Low Coverage Genotyping by Sequencing in Selectively Bred Arctic Charr ( Salvelinus alpinus )
Palaiokostas, Christos, Clarke, Shannon M, Jeuthe, Henrik, Brauning, Rudiger, Bilton, Timothy P, Dodds, Ken G, McEwan, John C, De Koning, Dirk-Jan
Published in G3 : genes - genomes - genetics (01.06.2020)
Published in G3 : genes - genomes - genetics (01.06.2020)
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Journal Article
Exclusion and Genomic Relatedness Methods for Assignment of Parentage Using Genotyping-by-Sequencing Data
Dodds, Ken G, McEwan, John C, Brauning, Rudiger, van Stijn, Tracey C, Rowe, Suzanne J, McEwan, K Mary, Clarke, Shannon M
Published in G3 : genes - genomes - genetics (01.10.2019)
Published in G3 : genes - genomes - genetics (01.10.2019)
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Journal Article
The Use of “Genotyping-by-Sequencing” to Recover Shared Genealogy in Genetically Diverse Eucalyptus Populations
Klápště, Jaroslav, Ashby, Rachael L., Telfer, Emily J., Graham, Natalie J., Dungey, Heidi S., Brauning, Rudiger, Clarke, Shannon M., Dodds, Ken G.
Published in Forests (01.07.2021)
Published in Forests (01.07.2021)
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Journal Article
Genotyping-by-Sequencing Strategy for Integrating Genomic Structure, Diversity and Performance of Various Japanese Quail ( Coturnix japonica ) Breeds
Volkova, Natalia A, Romanov, Michael N, Abdelmanova, Alexandra S, Larionova, Polina V, German, Nadezhda Yu, Vetokh, Anastasia N, Shakhin, Alexey V, Volkova, Ludmila A, Anshakov, Dmitry V, Fisinin, Vladimir I, Narushin, Valeriy G, Griffin, Darren K, Sölkner, Johann, Brem, Gottfried, McEwan, John C, Brauning, Rudiger, Zinovieva, Natalia A
Published in Animals (Basel) (01.11.2023)
Published in Animals (Basel) (01.11.2023)
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Journal Article
Whole Genome Sequencing for Determining the Source of Mycobacterium bovis Infections in Livestock Herds and Wildlife in New Zealand
Price-Carter, Marian, Brauning, Rudiger, de Lisle, Geoffrey W, Livingstone, Paul, Neill, Mark, Sinclair, Jane, Paterson, Brent, Atkinson, Gillian, Knowles, Garry, Crews, Kevin, Crispell, Joseph, Kao, Rowland, Robbe-Austerman, Suelee, Stuber, Tod, Parkhill, Julian, Wood, James, Harris, Simon, Collins, Desmond M
Published in Frontiers in veterinary science (30.10.2018)
Published in Frontiers in veterinary science (30.10.2018)
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Journal Article
Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps
Prieur, Vincent, Clarke, Shannon M, Brito, Luiz F, McEwan, John C, Lee, Michael A, Brauning, Rudiger, Dodds, Ken G, Auvray, Benoît
Published in BMC genetics (21.07.2017)
Published in BMC genetics (21.07.2017)
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Journal Article
A multiway analysis for identifying high integrity bovine BACs
Ratnakumar, Abhirami, Barris, Wesley, McWilliam, Sean, Brauning, Rudiger, McEwan, John C, Snelling, Warren M, Dalrymple, Brian P
Published in BMC genomics (23.01.2009)
Published in BMC genomics (23.01.2009)
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Journal Article
Construction of relatedness matrices using genotyping-by-sequencing data
Dodds, Ken G, McEwan, John C, Brauning, Rudiger, Anderson, Rayna M, van Stijn, Tracey C, Kristjánsson, Theodor, Clarke, Shannon M
Published in BMC genomics (09.12.2015)
Published in BMC genomics (09.12.2015)
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Journal Article
Aotearoa genomic data repository: An āhuru mōwai for taonga species sequencing data
Te Aika, Ben, Liggins, Libby, Rye, Claire, Perkins, E. Owen, Huh, Jun, Brauning, Rudiger, Godfery, Tracey, Black, Michael A.
Published in Molecular ecology resources (15.09.2023)
Published in Molecular ecology resources (15.09.2023)
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Journal Article