Single-cell transcriptional profiles in human skeletal muscle
Rubenstein, Aliza B., Smith, Gregory R., Raue, Ulrika, Begue, Gwénaëlle, Minchev, Kiril, Ruf-Zamojski, Frederique, Nair, Venugopalan D., Wang, Xingyu, Zhou, Lan, Zaslavsky, Elena, Trappe, Todd A., Trappe, Scott, Sealfon, Stuart C.
Published in Scientific reports (14.01.2020)
Published in Scientific reports (14.01.2020)
Get full text
Journal Article
Skeletal muscle transcriptome response to a bout of endurance exercise in physically active and sedentary older adults
Rubenstein, Aliza B, Hinkley, J Matthew, Nair, Venugopalan D, Nudelman, German, Standley, Robert A, Yi, Fanchao, Yu, GongXin, Trappe, Todd A, Bamman, Marcas M, Trappe, Scott W, Sparks, Lauren M, Goodpaster, Bret H, Vega, Rick B, Sealfon, Stuart C, Zaslavsky, Elena, Coen, Paul M
Published in American journal of physiology: endocrinology and metabolism (01.03.2022)
Published in American journal of physiology: endocrinology and metabolism (01.03.2022)
Get full text
Journal Article
Attenuated activation of pulmonary immune cells in mRNA-1273-vaccinated hamsters after SARS-CoV-2 infection
Meyer, Michelle, Wang, Yuan, Edwards, Darin, Smith, Gregory R, Rubenstein, Aliza B, Ramanathan, Palaniappan, Mire, Chad E, Pietzsch, Colette, Chen, Xi, Ge, Yongchao, Cheng, Wan Sze, Henry, Carole, Woods, Angela, Ma, LingZhi, Stewart-Jones, Guillaume Be, Bock, Kevin W, Minai, Mahnaz, Nagata, Bianca M, Periasamy, Sivakumar, Shi, Pei-Yong, Graham, Barney S, Moore, Ian N, Ramos, Irene, Troyanskaya, Olga G, Zaslavsky, Elena, Carfi, Andrea, Sealfon, Stuart C, Bukreyev, Alexander
Published in The Journal of clinical investigation (15.10.2021)
Published in The Journal of clinical investigation (15.10.2021)
Get full text
Journal Article
Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature
Cappuccio, Antonio, Chawla, Daniel G., Chen, Xi, Rubenstein, Aliza B., Cheng, Wan Sze, Mao, Weiguang, Burke, Thomas W., Tsalik, Ephraim L., Petzold, Elizabeth, Henao, Ricardo, McClain, Micah T., Woods, Christopher W., Chikina, Maria, Troyanskaya, Olga G., Sealfon, Stuart C., Kleinstein, Steven H., Zaslavsky, Elena
Published in Cell systems (21.12.2022)
Published in Cell systems (21.12.2022)
Get full text
Journal Article
Author Correction: Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data
Chen, Xi, Wang, Yuan, Cappuccio, Antonio, Cheng, Wan-Sze, Zamojski, Frederique Ruf, Nair, Venugopalan D, Miller, Clare M, Rubenstein, Aliza B, Nudelman, German, Tadych, Alicja, Theesfeld, Chandra L, Vornholt, Alexandria, George, Mary-Catherine, Ruffin, Felicia, Dagher, Michael, Chawla, Daniel G, Soares-Schanoski, Alessandra, Spurbeck, Rachel R, Ndhlovu, Lishomwa C, Sebra, Robert, Kleinstein, Steven H, Letizia, Andrew G, Ramos, Irene, Fowler, Jr, Vance G, Woods, Christopher W, Zaslavsky, Elena, Troyanskaya, Olga G, Sealfon, Stuart C
Published in Nature Computational Science (01.09.2023)
Published in Nature Computational Science (01.09.2023)
Get more information
Journal Article
Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data
Chen, Xi, Wang, Yuan, Cappuccio, Antonio, Cheng, Wan-Sze, Zamojski, Frederique Ruf, Nair, Venugopalan D, Miller, Clare M, Rubenstein, Aliza B, Nudelman, German, Tadych, Alicja, Theesfeld, Chandra L, Vornholt, Alexandria, George, Mary-Catherine, Ruffin, Felicia, Dagher, Michael, Chawla, Daniel G, Soares-Schanoski, Alessandra, Spurbeck, Rachel R, Ndhlovu, Lishomwa C, Sebra, Robert, Kleinstein, Steven H, Letizia, Andrew G, Ramos, Irene, Fowler, Jr, Vance G, Woods, Christopher W, Zaslavsky, Elena, Troyanskaya, Olga G, Sealfon, Stuart C
Published in Nature Computational Science (01.07.2023)
Published in Nature Computational Science (01.07.2023)
Get more information
Journal Article
Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise
Rubenstein, Aliza B, Smith, Gregory R, Zhang, Zidong, Chen, Xi, Chambers, Toby L, Ruf-Zamojski, Frederique, Mendelev, Natalia, Cheng, Wan Sze, Zamojski, Michel, Amper, Mary Anne S, Nair, Venugopalan D, Marderstein, Andrew R, Montgomery, Stephen B, Troyanskaya, Olga G, Zaslavsky, Elena, Trappe, Todd, Trappe, Scott, Sealfon, Stuart C
Published in bioRxiv (09.10.2023)
Published in bioRxiv (09.10.2023)
Get full text
Journal Article
mRNA-1273 efficacy in a severe COVID-19 model: attenuated activation of pulmonary immune cells after challenge
Meyer, Michelle, Wang, Yuan, Edwards, Darin, Smith, Gregory R, Rubenstein, Aliza B, Ramanathan, Palaniappan, Mire, Chad E, Pietzsch, Colette, Chen, Xi, Ge, Yongchao, Cheng, Wan Sze, Henry, Carole, Woods, Angela, Ma, LingZhi, Stewart-Jones, Guillaume B E, Bock, Kevin W, Minai, Mahnaz, Nagata, Bianca M, Periasamy, Sivakumar, Shi, Pei-Yong, Graham, Barney S, Moore, Ian N, Ramos, Irene, Troyanskaya, Olga G, Zaslavsky, Elena, Carfi, Andrea, Sealfon, Stuart C, Bukreyev, Alexander
Published in bioRxiv (25.01.2021)
Published in bioRxiv (25.01.2021)
Get full text
Journal Article
Paper
Temporal dynamics of the multi-omic response to endurance exercise training across tissues
Motrpac Study Group, Gay, Nicole R, Ashley, Euan, Avila-Pacheco, Julian, Bararpour, Nasim, Burant, Charles, Hou, Zhenxin, Ilkayeva, Olga, Ivanova, Anna A, Kachman, Maureen T, Kraus, William E, Lanza, Ian R, Li, Jun, Lindholm, Malene E, Many, Gina M, Marwaha, Shruti, Miller, Michael E, Muehlbauer, Michael J, Nair, K Sreekumaran, Nair, Venugopalan D, Ortlund, Eric A, Presby, David M, Wei-Jun, Qian, Rooney, Jessica L, Sanford, James A, Savage, Evan, Smith, Gregory R, Stowe, Cynthia L, Sun, Yifei, Vetr, Nikolai G, Walsh, Martin J, Zhao, Bingqing, Albertson, Brent G, Amper, Mary Anne S, Bamman, Marcas, Barton, Elisabeth R, Bergman, Bryan, Booth, Frank, Bouverat, Brian, Buford, Thomas W, Chambers, Toby L, Chavez, Clarisa, Chiu, Roxanne, Coen, Paul M, Cooper, Dan, Cornell, Elaine, Dalton, Karen P, Farrar, Roger, Gadde, Kishore, Gagne, Nicole, Goodpaster, Bret H, Haddad, Fadia, Hansen, Joshua R, Harris, Melissa, Hastie, Trevor, Hershman, Steven G, Hirshman, Michael F, Fang-Chi, Hsu, Huffman, Kim M, Jackson, Bailey E, Kohrt, Wendy M, Kramer, Kyle S, Leeuwenburgh, Christiaan, Ching-Ju, Lu, Dr Mani, Marjanovic, Nada, Marshall, Andrea, Melanson, Edward, Monroe, Matthew E, Moore, Ronald J, Moreau, Kerrie L, Mundorff, Charles C, Nachun, Daniel, Nestor, Michael D, Nigro, Pasquale, Nudelman, German, Pahor, Marco, Pincas, Hanna, Radom-Aizik, Shlomit, Ramachandran, Krithika, Rankinen, Tuomo, Alexander (Sasha) Raskind, Rasmussen, Blake B, Rejeski, W Jack, Rirak, Stas, Sagendorf, Tyler J, Samdarshi, Mihir, Schauer, Irene E, Seenarine, Nitish, Soni, Tanu, Thalacker-Mercer, Anna, Tibshirani, Rob, Vangeti, Sindhu, Volpi, Elena, Williams, John, Yu, Xuechen, Zaslavsky, Elena, Zebarjadi, Navid, Carr, Steven, Montgomery, Stephen B
Published in bioRxiv (05.10.2022)
Published in bioRxiv (05.10.2022)
Get full text
Paper