Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods
Ruano-Rubio, Valentín, Poch, Olivier, Thompson, Julie D
Published in BMC bioinformatics (24.11.2009)
Published in BMC bioinformatics (24.11.2009)
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Effective preparation of Plasmodium vivax field isolates for high-throughput whole genome sequencing
Auburn, Sarah, Marfurt, Jutta, Maslen, Gareth, Campino, Susana, Ruano Rubio, Valentin, Manske, Magnus, Machunter, Barbara, Kenangalem, Enny, Noviyanti, Rintis, Trianty, Leily, Sebayang, Boni, Wirjanata, Grennady, Sriprawat, Kanlaya, Alcock, Daniel, Macinnis, Bronwyn, Miotto, Olivo, Clark, Taane G, Russell, Bruce, Anstey, Nicholas M, Nosten, François, Kwiatkowski, Dominic P, Price, Ric N
Published in PloS one (04.01.2013)
Published in PloS one (04.01.2013)
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Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum
Miles, Alistair, Iqbal, Zamin, Vauterin, Paul, Pearson, Richard, Campino, Susana, Theron, Michel, Gould, Kelda, Mead, Daniel, Drury, Eleanor, O'Brien, John, Ruano Rubio, Valentin, MacInnis, Bronwyn, Mwangi, Jonathan, Samarakoon, Upeka, Ranford-Cartwright, Lisa, Ferdig, Michael, Hayton, Karen, Su, Xin-Zhuan, Wellems, Thomas, Rayner, Julian, McVean, Gil, Kwiatkowski, Dominic
Published in Genome research (01.09.2016)
Published in Genome research (01.09.2016)
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Nondestructive adult age at death estimation: Visualizing cementum annulations in a known age historical human assemblage using synchrotron X‐ray microtomography
Le Cabec, Adeline, Tang, Nancy K., Ruano Rubio, Valentin, Hillson, Simon
Published in American journal of physical anthropology (01.01.2019)
Published in American journal of physical anthropology (01.01.2019)
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Journal Article
Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing
Manske, Magnus, Miotto, Olivo, Campino, Susana, Auburn, Sarah, Almagro-Garcia, Jacob, Maslen, Gareth, O’Brien, Jack, Djimde, Abdoulaye, Doumbo, Ogobara, Zongo, Issaka, Ouedraogo, Jean-Bosco, Michon, Pascal, Mueller, Ivo, Siba, Peter, Nzila, Alexis, Borrmann, Steffen, Kiara, Steven M., Marsh, Kevin, Jiang, Hongying, Su, Xin-Zhuan, Amaratunga, Chanaki, Fairhurst, Rick, Socheat, Duong, Nosten, Francois, Imwong, Mallika, White, Nicholas J., Sanders, Mandy, Anastasi, Elisa, Alcock, Dan, Drury, Eleanor, Oyola, Samuel, Quail, Michael A., Turner, Daniel J., Ruano-Rubio, Valentin, Jyothi, Dushyanth, Amenga-Etego, Lucas, Hubbart, Christina, Jeffreys, Anna, Rowlands, Kate, Sutherland, Colin, Roper, Cally, Mangano, Valentina, Modiano, David, Tan, John C., Ferdig, Michael T., Amambua-Ngwa, Alfred, Conway, David J., Takala-Harrison, Shannon, Plowe, Christopher V., Rayner, Julian C., Rockett, Kirk A., Clark, Taane G., Newbold, Chris I., Berriman, Matthew, MacInnis, Bronwyn, Kwiatkowski, Dominic P.
Published in Nature (London) (19.07.2012)
Published in Nature (London) (19.07.2012)
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Abstract 3581: GATK ACNV: allelic copy-number variation discovery from SNPs and coverage data
Chevalier, Aaron, Lichtenstein, Lee, Smirnov, Andrey, Lee, Samuel K., Babidi, Mehrtash, Benjamin, David I., Ruano-Rubio, Valentin
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
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Scaling accurate genetic variant discovery to tens of thousands of samples
Poplin, Ryan, Ruano-Rubio, Valentin, Depristo, Mark A, Fennell, Tim J, Carneiro, Mauricio O, Geraldine A Van Der Auwera, Kling, David E, Gauthier, Laura D, Levy-Moonshine, Ami, Roazen, David, Shakir, Khalid, Thibault, Joel, Chandran, Sheila, Whelan, Chris, Lek, Monkol, Gabriel, Stacey, Daly, Mark J, Neale, Benjamin, Macarthur, Daniel G, Banks, Eric
Published in bioRxiv (24.07.2018)
Published in bioRxiv (24.07.2018)
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Author Correction: The mutational constraint spectrum quantified from variation in 141,456 humans
Karczewski, Konrad J., Francioli, Laurent C., Tiao, Grace, Cummings, Beryl B., Alföldi, Jessica, Wang, Qingbo, Collins, Ryan L., Laricchia, Kristen M., Ganna, Andrea, Birnbaum, Daniel P., Gauthier, Laura D., Brand, Harrison, Solomonson, Matthew, Watts, Nicholas A., Rhodes, Daniel, Singer-Berk, Moriel, England, Eleina M., Seaby, Eleanor G., Kosmicki, Jack A., Walters, Raymond K., Tashman, Katherine, Farjoun, Yossi, Banks, Eric, Poterba, Timothy, Wang, Arcturus, Seed, Cotton, Whiffin, Nicola, Chong, Jessica X., Samocha, Kaitlin E., Pierce-Hoffman, Emma, Zappala, Zachary, O’Donnell-Luria, Anne H., Minikel, Eric Vallabh, Weisburd, Ben, Lek, Monkol, Ware, James S., Vittal, Christopher, Armean, Irina M., Bergelson, Louis, Cibulskis, Kristian, Connolly, Kristen M., Covarrubias, Miguel, Donnelly, Stacey, Ferriera, Steven, Gabriel, Stacey, Gentry, Jeff, Gupta, Namrata, Jeandet, Thibault, Kaplan, Diane, Llanwarne, Christopher, Munshi, Ruchi, Novod, Sam, Petrillo, Nikelle, Roazen, David, Ruano-Rubio, Valentin, Saltzman, Andrea, Schleicher, Molly, Soto, Jose, Tibbetts, Kathleen, Tolonen, Charlotte, Wade, Gordon, Talkowski, Michael E., Neale, Benjamin M., Daly, Mark J., MacArthur, Daniel G.
Published in Nature (London) (18.02.2021)
Published in Nature (London) (18.02.2021)
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Author Correction: A structural variation reference for medical and population genetics
Collins, Ryan L., Brand, Harrison, Karczewski, Konrad J., Zhao, Xuefang, Alföldi, Jessica, Francioli, Laurent C., Khera, Amit V., Lowther, Chelsea, Gauthier, Laura D., Wang, Harold, Watts, Nicholas A., Solomonson, Matthew, O’Donnell-Luria, Anne, Baumann, Alexander, Munshi, Ruchi, Walker, Mark, Whelan, Christopher W., Huang, Yongqing, Brookings, Ted, Sharpe, Ted, Stone, Matthew R., Valkanas, Elise, Fu, Jack, Tiao, Grace, Laricchia, Kristen M., Ruano-Rubio, Valentin, Stevens, Christine, Gupta, Namrata, Cusick, Caroline, Margolin, Lauren, Taylor, Kent D., Lin, Henry J., Rich, Stephen S., Post, Wendy S., Chen, Yii-Der Ida, Rotter, Jerome I., Nusbaum, Chad, Philippakis, Anthony, Lander, Eric, Gabriel, Stacey, Neale, Benjamin M., Kathiresan, Sekar, Daly, Mark J., Banks, Eric, MacArthur, Daniel G., Talkowski, Michael E.
Published in Nature (London) (18.02.2021)
Published in Nature (London) (18.02.2021)
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A genome-wide mutational constraint map quantified from variation in 76,156 human genomes
Chen, Siwei, Francioli, Laurent, Goodrich, Julia, Collins, Ryan, Wang, Qingbo, Alfoldi, Jessica, Watts, Nicholas, Vittal, Christopher, Gauthier, Laura, Poterba, Timothy, Wilson, Michael, Tarasova, Yekaterina, Phu, William, Yohannes, Mary, Koenig, Zan, Farjoun, Yossi, Banks, Eric, Donnelly, Stacey, Gabriel, Stacey, Gupta, Namrata, Ferriera, Steven, Tolonen, Charlotte, Novod, Sam, Bergelson, Louis, Roazen, David, Ruano-Rubio, Valentin, Covarrubias, Miguel, Llanwarne, Christopher, Petrillo, Nikelle, Wade, Gordon, Thibault Jeandet, Munshi, Ruchi, Tibbetts, Kathleen, Gnomad Project Consortium, O'donnell-Luria, Anne, Solomonson, Matthew, Seed, Cotton, Martin, Alicia, Talkowski, Michael, Rehm, Heidi, Daly, Mark, Tiao, Grace, Neale, Benjamin, Macarthur, Daniel, Karczewski, Konrad
Published in bioRxiv (21.03.2022)
Published in bioRxiv (21.03.2022)
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An open resource of structural variation for medical and population genetics
Collins, Ryan L, Brand, Harrison, Karczewski, Konrad J, Zhao, Xuefang, Alföldi, Jessica, Francioli, Laurent C, Khera, Amit V, Lowther, Chelsea, Gauthier, Laura D, Wang, Harold, Watts, Nicholas A, Solomonson, Matthew, O'donnell-Luria, Anne, Baumann, Alexander, Munshi, Ruchi, Walker, Mark, Whelan, Christopher, Huang, Yongquing, Brookings, Ted, Sharpe, Ted, Stone, Matthew R, Valkanas, Elise, Fu, Jack, Tiao, Grace, Laricchia, Kristen M, Ruano-Rubio, Valentin, Stevens, Christine, Gupta, Namrata, Margolin, Lauren, Genome Aggregation Database Consortium, Taylor, Kent D, Lin, Henry J, Rich, Stephen S, Post, Wendy, Chen, Yii-Der Ida, Rotter, Jerome I, Nusbaum, Chad, Philippakis, Anthony, Lander, Eric, Gabriel, Stacey, Neale, Benjamin M, Sekar Kathiresan, Daly, Mark J, Banks, Eric, Macarthur, Daniel G, Talkowski, Michael E
Published in bioRxiv (21.10.2019)
Published in bioRxiv (21.10.2019)
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Genome variation and meiotic recombination in Plasmodium falciparum: insights from deep sequencing of genetic crosses
Miles, Alistair, Iqbal, Zamin, Vauterin, Paul, Pearson, Richard, Campino, Susana, Theron, Michel, Gould, Kelda, Mead, Daniel, Drury, Eleanor, O'brien, John, Valentin Ruano Rubio, Macinnis, Bronwyn, Mwangi, Jonathan, Samarakoon, Upeka, Ranford-Cartwright, Lisa, Ferdig, Michael, Hayton, Karen, Su, Xinzhuan, Wellems, Thomas, Rayner, Julian, Mcvean, Gil, Kwiatkowski, Dominic
Published in bioRxiv (23.12.2015)
Published in bioRxiv (23.12.2015)
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