Increasing coverage of transcription factor position weight matrices through domain-level homology
Bernard, Brady, Thorsson, Vesteinn, Rovira, Hector, Shmulevich, Ilya
Published in PloS one (27.08.2012)
Published in PloS one (27.08.2012)
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EPEPT: a web service for enhanced P-value estimation in permutation tests
Knijnenburg, Theo A, Lin, Jake, Rovira, Hector, Boyle, John, Shmulevich, Ilya
Published in BMC bioinformatics (24.10.2011)
Published in BMC bioinformatics (24.10.2011)
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Adaptable data management for systems biology investigations
Boyle, John, Rovira, Hector, Cavnor, Chris, Burdick, David, Killcoyne, Sarah, Shmulevich, Ilya
Published in BMC bioinformatics (06.03.2009)
Published in BMC bioinformatics (06.03.2009)
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SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments
Burdick, David B, Cavnor, Chris C, Handcock, Jeremy, Killcoyne, Sarah, Lin, Jake, Marzolf, Bruz, Ramsey, Stephen A, Rovira, Hector, Bressler, Ryan, Shmulevich, Ilya, Boyle, John
Published in BMC bioinformatics (14.07.2010)
Published in BMC bioinformatics (14.07.2010)
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Fastbreak: a tool for analysis and visualization of structural variations in genomic data
Bressler, Ryan, Lin, Jake, Eakin, Andrea, Robinson, Thomas, Kreisberg, Richard, Rovira, Hector, Knijnenburg, Theo, Boyle, John, Shmulevich, Ilya
Published in EURASIP journal on bioinformatics & systems biology (09.10.2012)
Published in EURASIP journal on bioinformatics & systems biology (09.10.2012)
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Comprehensive molecular characterization of urothelial bladder carcinoma
Weinstein, John N, Akbani, Rehan, Broom, Bradley M, Wang, Wenyi, Verhaak, Roeland G. W, McConkey, David
Published in Nature (London) (20.03.2014)
Published in Nature (London) (20.03.2014)
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The Somatic Genomic Landscape of Glioblastoma
Brennan, Cameron W., Noushmehr, Houtan, Salama, Sofie R., Berman, Samuel H., Beroukhim, Rameen, Wu, Chang-Jiun, Yung, W.K., Sougnez, Carrie, Finocchiaro, Gaetano, O’Neill, Brian P., Myers, Jerome, Weisenberger, Daniel J., Penny, Robert, Marra, Marco, Meyerson, Matthew, Chin, Lynda, Ostrom, Quinn, Wolinsky, Yingli, Black, Keith L., Boulos, Madgy, Brown, Jenn, Czerinski, Christine, Koyfman, Yakov, Rabeno, Brenda, Auman, J.Todd, Lee, Semin, Kalkanis, Steven, Mikkelsen, Tom, Scarpace, Lisa, Reynolds, Sheila, Curley, Erin, Morris, Scott, Yena, Peggy, Cuppini, Lucia, Maderna, Emanuela, Pollo, Bianca, Hoadley, Katherine A., Shi, Yan, Topal, Michael D., Aksoy, B. Arman, Antipin, Yevgeniy, Borsu, Laetitia, Brennan, Cameron W., Gao, Jianjiong, Jacobsen, Anders, Ladanyi, Marc, Lash, Alex, Liang, Yupu, Chen, Qing-Rong, Shaw, Kenna R. Mills, Eckman, John, Eley, Greg, Jensen, Mark A., Kahn, Ari, Pot, David A., Wan, Yunhu, Hansen, Nathan, Hothi, Parvi, Lau, Ching, Cherniack, Andrew D., Noble, Mike, Cibulskis, Kristian, Frazer, Scott, Gabriel, Stacey B., Gehlenborg, Nils, Gentry, Jeff, Heiman, David, Lander, Eric S., Mallard, Will, Meyerson, Matthew, Getz, Gad, Dees, Nathan N., Fulton, Robert S., Kanchi, Krishna-Latha, Devine, Karen, Carlin, Daniel, Ellrott, Kyle, Haussler, David, Ng, Sam, Salama, Sofie R., Waltman, Peter, Zhu, Jing, Frentzen, Barbara, Friedman, William, McTiernan, Raquel, Perou, Charles M., Akbani, Rehan, Aldape, Kenneth, Bogler, Oliver, Fuller, Gregory N., Mills, Gordon, Protopopov, Alexei, Wu, Chang-Jiun, Weinstein, John N., Verhaak, Roel G.W., Noushmehr, Houtan, Triche, Timothy J., Laird, Peter W., VanMeir, Erwin G., Brat, Daniel
Published in Cell (10.10.2013)
Published in Cell (10.10.2013)
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Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin
Hoadley, Katherine A., Yau, Christina, Wolf, Denise M., Cherniack, Andrew D., Tamborero, David, Ng, Sam, Leiserson, Max D.M., Niu, Beifang, McLellan, Michael D., Uzunangelov, Vladislav, Zhang, Jiashan, Kandoth, Cyriac, Akbani, Rehan, Shen, Hui, Omberg, Larsson, Chu, Andy, Margolin, Adam A., van’t Veer, Laura J., Lopez-Bigas, Nuria, Laird, Peter W., Raphael, Benjamin J., Ding, Li, Robertson, A. Gordon, Byers, Lauren A., Mills, Gordon B., Weinstein, John N., Van Waes, Carter, Chen, Zhong, Collisson, Eric A., Benz, Christopher C., Perou, Charles M., Stuart, Joshua M.
Published in Cell (14.08.2014)
Published in Cell (14.08.2014)
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Fastbreak: a tool for analysis and visualization of structural variations in genomic data: Doc 23
Bressler, Ryan, Lin, Jake, Eakin, Andrea, Robinson, Thomas, Kreisberg, Richard, Rovira, Hector, Knijnenburg, Theo, Boyle, John, Shmulevich, Ilya
Published in EURASIP journal on bioinformatics & systems biology (01.10.2012)
Published in EURASIP journal on bioinformatics & systems biology (01.10.2012)
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