Genome annotation across species using deep convolutional neural networks
Khodabandelou, Ghazaleh, Routhier, Etienne, Mozziconacci, Julien
Published in PeerJ. Computer science (15.06.2020)
Published in PeerJ. Computer science (15.06.2020)
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Journal Article
keras_dna: a wrapper for fast implementation of deep learning models in genomics
Routhier, Etienne, Bin Kamruddin, Ayman, Mozziconacci, Julien
Published in Bioinformatics (Oxford, England) (12.07.2021)
Published in Bioinformatics (Oxford, England) (12.07.2021)
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Journal Article
Genome-wide prediction of DNA mutation effect on nucleosome positions for yeast synthetic genomics
Routhier, Etienne, Pierre, Edgard, Khodabandelou, Ghazaleh, Mozziconacci, Julien
Published in Genome research (01.02.2021)
Published in Genome research (01.02.2021)
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Journal Article
In silico design of DNA sequences for in vivo nucleosome positioning
Routhier, Etienne, Joubert, Alexandra, Westbrook, Alex, Pierre, Edgard, Lancrey, Astrid, Cariou, Marie, Boulé, Jean-Baptiste, Mozziconacci, Julien
Published in Nucleic acids research (03.06.2024)
Published in Nucleic acids research (03.06.2024)
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Journal Article
Nucleosome Positioning on Large Tandem DNA Repeats of the ‘601’ Sequence Engineered in Saccharomyces cerevisiae
Lancrey, Astrid, Joubert, Alexandra, Duvernois-Berthet, Evelyne, Routhier, Etienne, Raj, Saurabh, Thierry, Agnès, Sigarteu, Marta, Ponger, Loic, Croquette, Vincent, Mozziconacci, Julien, Boulé, Jean-Baptiste
Published in Journal of molecular biology (15.04.2022)
Published in Journal of molecular biology (15.04.2022)
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Journal Article
Exogenous chromosomes reveal how sequence composition drives chromatin assembly, activity, folding and compartmentalization
Chapard, Christophe, Meneu, Lea, Serizay, Jacques, Routhier, Etienne, Ruault, Myriam, Bignaud, Amaury, Gourgues, Geraldine, Lartigue, Carole, Piazza, Aurele, Taddei, Angela, Beckouet, Frederic, Mozziconacci, Julien, Koszul, Romain
Published in bioRxiv (12.01.2023)
Published in bioRxiv (12.01.2023)
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Nucleosome positioning on large tandem DNA repeats of the '601' sequence engineered in Saccharomyces cerevisiae
Lancrey, Astrid, Joubert, Alexandra, Duvernois-Berthet, Evelyne, Routhier, Etienne, Raj, Saurabh, Thierry, Agnes, Sigarteu, Marta, Ponger, Loic, Croquette, Vincent, Mozziconacci, Julien, Boule, Jean-Baptiste
Published in bioRxiv (25.08.2021)
Published in bioRxiv (25.08.2021)
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