The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion
Coleman, Jeffrey J, Rounsley, Steve D, Rodriguez-Carres, Marianela, Kuo, Alan, Wasmann, Catherine C, Grimwood, Jane, Schmutz, Jeremy, Taga, Masatoki, White, Gerard J, Zhou, Shiguo, Schwartz, David C, Freitag, Michael, Ma, Li-Jun, Danchin, Etienne G J, Henrissat, Bernard, Coutinho, Pedro M, Nelson, David R, Straney, Dave, Napoli, Carolyn A, Barker, Bridget M, Gribskov, Michael, Rep, Martijn, Kroken, Scott, Molnár, István, Rensing, Christopher, Kennell, John C, Zamora, Jorge, Farman, Mark L, Selker, Eric U, Salamov, Asaf, Shapiro, Harris, Pangilinan, Jasmyn, Lindquist, Erika, Lamers, Casey, Grigoriev, Igor V, Geiser, David M, Covert, Sarah F, Temporini, Esteban, Vanetten, Hans D
Published in PLoS genetics (01.08.2009)
Published in PLoS genetics (01.08.2009)
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Impact of index hopping and bias towards the reference allele on accuracy of genotype calls from low-coverage sequencing
Ros-Freixedes, Roger, Battagin, Mara, Johnsson, Martin, Gorjanc, Gregor, Mileham, Alan J, Rounsley, Steve D, Hickey, John M
Published in Genetics selection evolution (Paris) (13.12.2018)
Published in Genetics selection evolution (Paris) (13.12.2018)
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DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses
Wicker, Thomas, Yu, Yeisoo, Haberer, Georg, Mayer, Klaus F. X., Marri, Pradeep Reddy, Rounsley, Steve, Chen, Mingsheng, Zuccolo, Andrea, Panaud, Olivier, Wing, Rod A., Roffler, Stefan
Published in Nature communications (07.09.2016)
Published in Nature communications (07.09.2016)
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Molecular Characterization of Transgenic Events Using Next Generation Sequencing Approach
Guttikonda, Satish K, Marri, Pradeep, Mammadov, Jafar, Ye, Liang, Soe, Khaing, Richey, Kimberly, Cruse, James, Zhuang, Meibao, Gao, Zhifang, Evans, Clive, Rounsley, Steve, Kumpatla, Siva P
Published in PloS one (23.02.2016)
Published in PloS one (23.02.2016)
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QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii
Nzuki, Inosters, Katari, Manpreet S, Bredeson, Jessen V, Masumba, Esther, Kapinga, Fortunus, Salum, Kasele, Mkamilo, Geoffrey S, Shah, Trushar, Lyons, Jessica B, Rokhsar, Daniel S, Rounsley, Steve, Myburg, Alexander A, Ferguson, Morag E
Published in Frontiers in plant science (21.07.2017)
Published in Frontiers in plant science (21.07.2017)
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Candidate genes for field resistance to cassava brown streak disease revealed through the analysis of multiple data sources
Ferguson, Morag E, Eyles, Rodney P, Garcia-Oliveira, Ana Luísa, Kapinga, Fortunus, Masumba, Esther A, Amuge, Teddy, Bredeson, Jessen V, Rokhsar, Daniel S, Lyons, Jessica B, Shah, Trushar, Rounsley, Steve, Mkamilo, Geoffrey
Published in Frontiers in plant science (2023)
Published in Frontiers in plant science (2023)
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Journal Article
Variations of five eIF4E genes across cassava accessions exhibiting tolerant and susceptible responses to cassava brown streak disease
Shi, Shanshan, Zhang, Xiuchun, Mandel, M Alejandra, Zhang, Peng, Zhang, Yuliang, Ferguson, Morag, Amuge, Teddy, Rounsley, Steve, Liu, Zhixin, Xiong, Zhongguo
Published in PloS one (03.08.2017)
Published in PloS one (03.08.2017)
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Scaffold filling, contig fusion and comparative gene order inference
Muñoz, Adriana, Zheng, Chunfang, Zhu, Qian, Albert, Victor A, Rounsley, Steve, Sankoff, David
Published in BMC bioinformatics (04.06.2010)
Published in BMC bioinformatics (04.06.2010)
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Sequence variation, evolutionary constraint, and selection at the CD163 gene in pigs
Johnsson, Martin, Ros-Freixedes, Roger, Gorjanc, Gregor, Campbell, Matt A, Naswa, Sudhir, Kelly, Kimberly, Lightner, Jonathan, Rounsley, Steve, Hickey, John M
Published in Genetics selection evolution (Paris) (20.12.2018)
Published in Genetics selection evolution (Paris) (20.12.2018)
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Journal Article
Identification of a Major QTL-Controlling Resistance to the Subtropical Race 4 of Fusarium oxysporum f. sp. cubense in Musa acuminata ssp. malaccensis
Chen, Andrew, Sun, Jiaman, Martin, Guillaume, Gray, Lesley-Ann, Hřibová, Eva, Christelová, Pavla, Yahiaoui, Nabila, Rounsley, Steve, Lyons, Rebecca, Batley, Jacqueline, Chen, Ning, Hamill, Sharon, Rai, Subash K, Coin, Lachlan, Uwimana, Brigitte, D'Hont, Angelique, Doležel, Jaroslav, Edwards, David, Swennen, Rony, Aitken, Elizabeth A B
Published in Pathogens (Basel) (09.02.2023)
Published in Pathogens (Basel) (09.02.2023)
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Uneven chromosome contraction and expansion in the maize genome
Bruggmann, Rémy, Bharti, Arvind K, Gundlach, Heidrun, Lai, Jinsheng, Young, Sarah, Pontaroli, Ana C, Wei, Fusheng, Haberer, Georg, Fuks, Galina, Du, Chunguang, Raymond, Christina, Estep, Matt C, Liu, Renyi, Bennetzen, Jeffrey L, Chan, Agnes P, Rabinowicz, Pablo D, Quackenbush, John, Barbazuk, W Brad, Wing, Rod A, Birren, Bruce, Nusbaum, Chad, Rounsley, Steve, Mayer, Klaus F X, Messing, Joachim
Published in Genome Research (01.10.2006)
Published in Genome Research (01.10.2006)
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High throughput direct end sequencing of BAC clones
Kelley, Jenny M., Field, Casey E., Brook Craven, M., Rounsley, Steve D., Adams, Mark D., Bocskai, Diana, Kim, Ung-Jin
Published in Nucleic acids research (15.03.1999)
Published in Nucleic acids research (15.03.1999)
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Journal Article
Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity
Bredeson, Jessen V, Lyons, Jessica B, Prochnik, Simon E, Wu, G Albert, Ha, Cindy M, Edsinger-Gonzales, Eric, Grimwood, Jane, Schmutz, Jeremy, Rabbi, Ismail Y, Egesi, Chiedozie, Nauluvula, Poasa, Lebot, Vincent, Ndunguru, Joseph, Mkamilo, Geoffrey, Bart, Rebecca S, Setter, Tim L, Gleadow, Roslyn M, Kulakow, Peter, Ferguson, Morag E, Rounsley, Steve, Rokhsar, Daniel S
Published in Nature biotechnology (01.05.2016)
Published in Nature biotechnology (01.05.2016)
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Journal Article
The coffee genome provides insight into the convergent evolution of caffeine biosynthesis
Denoeud, France, Carretero-Paulet, Lorenzo, Dereeper, Alexis, Droc, Gaëtan, Guyot, Romain, Pietrella, Marco, Zheng, Chunfang, Alberti, Adriana, Anthony, François, Aprea, Giuseppe, Aury, Jean-Marc, Bento, Pascal, Bernard, Maria, Bocs, Stéphanie, Campa, Claudine, Cenci, Alberto, Combes, Marie-Christine, Crouzillat, Dominique, Da Silva, Corinne, Daddiego, Loretta, De Bellis, Fabien, Dussert, Stéphane, Garsmeur, Olivier, Gayraud, Thomas, Guignon, Valentin, Jahn, Katharina, Jamilloux, Véronique, Joët, Thierry, Labadie, Karine, Lan, Tianying, Leclercq, Julie, Lepelley, Maud, Leroy, Thierry, Li, Lei-Ting, Librado, Pablo, Lopez, Loredana, Muñoz, Adriana, Noel, Benjamin, Pallavicini, Alberto, Perrotta, Gaetano, Poncet, Valérie, Pot, David, Priyono, Rigoreau, Michel, Rouard, Mathieu, Rozas, Julio, Tranchant-Dubreuil, Christine, VanBuren, Robert, Zhang, Qiong, Andrade, Alan C., Argout, Xavier, Bertrand, Benoît, de Kochko, Alexandre, Graziosi, Giorgio, Henry, Robert J, Jayarama, Ming, Ray, Nagai, Chifumi, Rounsley, Steve, Sankoff, David, Giuliano, Giovanni, Albert, Victor A., Wincker, Patrick, Lashermes, Philippe
Published in Science (American Association for the Advancement of Science) (05.09.2014)
Published in Science (American Association for the Advancement of Science) (05.09.2014)
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Journal Article
Agriculture: Feeding the future
McCouch, Susan, Baute, Gregory J, Bradeen, James, Bramel, Paula, Bretting, Peter K, Buckler, Edward, Burke, John M, Charest, David, Cloutier, Sylvie, Cole, Glenn, Dempewolf, Hannes, Dingkuhn, Michael, Feuillet, Catherine, Gepts, Paul, Grattapaglia, Dario, Guarino, Luigi, Jackson, Scott, Knapp, Sandra, Langridge, Peter, Lawton-Rauh, Amy, Lijua, Qui, Lusty, Charlotte, Michael, Todd, Myles, Sean, Naito, Ken, Nelson, Randall L, Pontarollo, Reno, Richards, Christopher M, Rieseberg, Loren, Ross-Ibarra, Jeffrey, Rounsley, Steve, Hamilton, Ruaraidh Sackville, Schurr, Ulrich, Stein, Nils, Tomooka, Norihiko, van der Knaap, Esther, van Tassel, David, Toll, Jane, Valls, Jose, Varshney, Rajeev K, Ward, Judson, Waugh, Robbie, Wenzl, Peter, Zamir, Daniel
Published in Nature (London) (04.07.2013)
Published in Nature (London) (04.07.2013)
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Journal Article
Feeding the future
McCouch, Susan, Baute, Gregory J., Bradeen, James, Bramel, Paula, Bretting, Peter K., Buckler, Edward, Burke, John M., Charest, David, Cloutier, Sylvie, Cole, Glenn, Dempewolf, Hannes, Dingkuhn, Michael, Feuillet, Catherine, Gepts, Paul, Grattapaglia, Dario, Guarino, Luigi, Jackson, Scott, Knapp, Sandra, Langridge, Peter, Lawton-Rauh, Amy, Lijua, Qui, Lusty, Charlotte, Michael, Todd, Myles, Sean, Naito, Ken, Nelson, Randall L., Pontarollo, Reno, Richards, Christopher M., Rieseberg, Loren, Ross-Ibarra, Jeffrey, Rounsley, Steve, Hamilton, Ruaraidh Sackville, Schurr, Ulrich, Stein, Nils, Tomooka, Norihiko, van der Knaap, Esther, van Tassel, David, Toll, Jane, Valls, Jose, Varshney, Rajeev K., Ward, Judson, Waugh, Robbie, Wenzl, Peter, Zamir, Daniel
Published in Nature (London) (04.07.2013)
Published in Nature (London) (04.07.2013)
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Journal Article
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses
O'Connell, Richard J, Thon, Michael R, Hacquard, Stéphane, Amyotte, Stefan G, Kleemann, Jochen, Torres, Maria F, Damm, Ulrike, Buiate, Ester A, Epstein, Lynn, Alkan, Noam, Altmüller, Janine, Alvarado-Balderrama, Lucia, Bauser, Christopher A, Becker, Christian, Birren, Bruce W, Chen, Zehua, Choi, Jaeyoung, Crouch, Jo Anne, Duvick, Jonathan P, Farman, Mark A, Gan, Pamela, Heiman, David, Henrissat, Bernard, Howard, Richard J, Kabbage, Mehdi, Koch, Christian, Kracher, Barbara, Kubo, Yasuyuki, Law, Audrey D, Lebrun, Marc-Henri, Lee, Yong-Hwan, Miyara, Itay, Moore, Neil, Neumann, Ulla, Nordström, Karl, Panaccione, Daniel G, Panstruga, Ralph, Place, Michael, Proctor, Robert H, Prusky, Dov, Rech, Gabriel, Reinhardt, Richard, Rollins, Jeffrey A, Rounsley, Steve, Schardl, Christopher L, Schwartz, David C, Shenoy, Narmada, Shirasu, Ken, Sikhakolli, Usha R, Stüber, Kurt, Sukno, Serenella A, Sweigard, James A, Takano, Yoshitaka, Takahara, Hiroyuki, Trail, Frances, van der Does, H Charlotte, Voll, Lars M, Will, Isa, Young, Sarah, Zeng, Qiandong, Zhang, Jingze, Zhou, Shiguo, Dickman, Martin B, Schulze-Lefert, Paul, Ver Loren van Themaat, Emiel, Ma, Li-Jun, Vaillancourt, Lisa J
Published in Nature genetics (01.09.2012)
Published in Nature genetics (01.09.2012)
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Journal Article
The Amborella Genome and the Evolution of Flowering Plants
Albert, Victor A, Barbazuk, WBradley, dePamphilis, Claude W, Der, Joshua P, Leebens-Mack, James, Ma, Hong, Palmer, Jeffrey D, Rounsley, Steve, Sankoff, David, Schuster, Stephan C, Soltis, Douglas E, Soltis, Pamela S, Wessler, Susan R, Wing, Rod A, Ammiraju, Jetty SS, Chamala, Srikar, Chanderbali, Andre S, Determann, Ronald, Ralph, Paula, Talag, Jason, Tomsho, Lynn, Walts, Brandon, Wanke, Stefan, Chang, Tien-Hao, Lan, Tianying, Arikit, Siwaret, Axtell, Michael J, Ayyampalayam, Saravanaraj, Burnette, James M, De Paoli, Emanuele, et. al
Published in Science (American Association for the Advancement of Science) (20.12.2013)
Published in Science (American Association for the Advancement of Science) (20.12.2013)
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The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication
Wang, Muhua, Yu, Yeisoo, Haberer, Georg, Marri, Pradeep Reddy, Fan, Chuanzhu, Goicoechea, Jose Luis, Zuccolo, Andrea, Song, Xiang, Kudrna, Dave, Ammiraju, Jetty S S, Cossu, Rosa Maria, Maldonado, Carlos, Chen, Jinfeng, Lee, Seunghee, Sisneros, Nick, de Baynast, Kristi, Golser, Wolfgang, Wissotski, Marina, Kim, Woojin, Sanchez, Paul, Ndjiondjop, Marie-Noelle, Sanni, Kayode, Long, Manyuan, Carney, Judith, Panaud, Olivier, Wicker, Thomas, Machado, Carlos A, Chen, Mingsheng, Mayer, Klaus F X, Rounsley, Steve, Wing, Rod A
Published in Nature genetics (01.09.2014)
Published in Nature genetics (01.09.2014)
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Journal Article
Cassava Genome: Current Progress, Future Directions
Prochnik, Simon, Marri, Pradeep Reddy, Desany, Brian, Rabinowicz, Pablo D, Kodira, Chinnappa, Mohiuddin, Mohammed, Rodriguez, Fausto, Fauquet, Claude, Tohme, Joseph, Harkins, Timothy, Rokhsar, Daniel S, Rounsley, Steve
Published in Tropical plant biology (01.03.2012)
Published in Tropical plant biology (01.03.2012)
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