The reactome pathway knowledgebase
Jassal, Bijay, Matthews, Lisa, Viteri, Guilherme, Gong, Chuqiao, Lorente, Pascual, Fabregat, Antonio, Sidiropoulos, Konstantinos, Cook, Justin, Gillespie, Marc, Haw, Robin, Loney, Fred, May, Bruce, Milacic, Marija, Rothfels, Karen, Sevilla, Cristoffer, Shamovsky, Veronica, Shorser, Solomon, Varusai, Thawfeek, Weiser, Joel, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D’Eustachio, Peter
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Journal Article
The reactome pathway knowledgebase 2022
Gillespie, Marc, Jassal, Bijay, Stephan, Ralf, Milacic, Marija, Rothfels, Karen, Senff-Ribeiro, Andrea, Griss, Johannes, Sevilla, Cristoffer, Matthews, Lisa, Gong, Chuqiao, Deng, Chuan, Varusai, Thawfeek, Ragueneau, Eliot, Haider, Yusra, May, Bruce, Shamovsky, Veronica, Weiser, Joel, Brunson, Timothy, Sanati, Nasim, Beckman, Liam, Shao, Xiang, Fabregat, Antonio, Sidiropoulos, Konstantinos, Murillo, Julieth, Viteri, Guilherme, Cook, Justin, Shorser, Solomon, Bader, Gary, Demir, Emek, Sander, Chris, Haw, Robin, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D’Eustachio, Peter
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Journal Article
Reactome enhanced pathway visualization
Sidiropoulos, Konstantinos, Viteri, Guilherme, Sevilla, Cristoffer, Jupe, Steve, Webber, Marissa, Orlic-Milacic, Marija, Jassal, Bijay, May, Bruce, Shamovsky, Veronica, Duenas, Corina, Rothfels, Karen, Matthews, Lisa, Song, Heeyeon, Stein, Lincoln, Haw, Robin, D'Eustachio, Peter, Ping, Peipei, Hermjakob, Henning, Fabregat, Antonio
Published in Bioinformatics (Oxford, England) (01.11.2017)
Published in Bioinformatics (Oxford, England) (01.11.2017)
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Journal Article
Annotating cancer variants and anti-cancer therapeutics in reactome
Milacic, Marija, Haw, Robin, Rothfels, Karen, Wu, Guanming, Croft, David, Hermjakob, Henning, D'Eustachio, Peter, Stein, Lincoln
Published in Cancers (08.11.2012)
Published in Cancers (08.11.2012)
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Journal Article
Components of the ESCRT Pathway, DFG16, and YGR122w Are Required for Rim101 To Act as a Corepressor with Nrg1 at the Negative Regulatory Element of the DIT1 Gene of Saccharomyces cerevisiae
Rothfels, Karen, Tanny, Jason C., Molnar, Enikö, Friesen, Helena, Commisso, Cosimo, Segall, Jacqueline
Published in Molecular and Cellular Biology (01.08.2005)
Published in Molecular and Cellular Biology (01.08.2005)
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Journal Article
The Reactome Pathway Knowledgebase
Fabregat, Antonio, Jupe, Steven, Matthews, Lisa, Sidiropoulos, Konstantinos, Gillespie, Marc, Garapati, Phani, Haw, Robin, Jassal, Bijay, Korninger, Florian, May, Bruce, Milacic, Marija, Roca, Corina Duenas, Rothfels, Karen, Sevilla, Cristoffer, Shamovsky, Veronica, Shorser, Solomon, Varusai, Thawfeek, Viteri, Guilherme, Weiser, Joel, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D'Eustachio, Peter
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
The Reactome Pathway Knowledgebase 2024
Milacic, Marija, Beavers, Deidre, Conley, Patrick, Gong, Chuqiao, Gillespie, Marc, Griss, Johannes, Haw, Robin, Jassal, Bijay, Matthews, Lisa, May, Bruce, Petryszak, Robert, Ragueneau, Eliot, Rothfels, Karen, Sevilla, Cristoffer, Shamovsky, Veronica, Stephan, Ralf, Tiwari, Krishna, Varusai, Thawfeek, Weiser, Joel, Wright, Adam, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D’Eustachio, Peter
Published in Nucleic acids research (05.01.2024)
Published in Nucleic acids research (05.01.2024)
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Journal Article
The Reactome pathway Knowledgebase
Fabregat, Antonio, Sidiropoulos, Konstantinos, Garapati, Phani, Gillespie, Marc, Hausmann, Kerstin, Haw, Robin, Jassal, Bijay, Jupe, Steven, Korninger, Florian, McKay, Sheldon, Matthews, Lisa, May, Bruce, Milacic, Marija, Rothfels, Karen, Shamovsky, Veronica, Webber, Marissa, Weiser, Joel, Williams, Mark, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D'Eustachio, Peter
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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Journal Article
The Reactome pathway knowledgebase
Croft, David, Mundo, Antonio Fabregat, Haw, Robin, Milacic, Marija, Weiser, Joel, Wu, Guanming, Caudy, Michael, Garapati, Phani, Gillespie, Marc, Kamdar, Maulik R, Jassal, Bijay, Jupe, Steven, Matthews, Lisa, May, Bruce, Palatnik, Stanislav, Rothfels, Karen, Shamovsky, Veronica, Song, Heeyeon, Williams, Mark, Birney, Ewan, Hermjakob, Henning, Stein, Lincoln, D'Eustachio, Peter
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes
Orlic-Milacic, Marija, Rothfels, Karen, Matthews, Lisa, Wright, Adam, Jassal, Bijay, Shamovsky, Veronica, Trinh, Quang, Gillespie, Marc E, Sevilla, Cristoffer, Tiwari, Krishna, Ragueneau, Eliot, Gong, Chuqiao, Stephan, Ralf, May, Bruce, Haw, Robin, Weiser, Joel, Beavers, Deidre, Conley, Patrick, Hermjakob, Henning, Stein, Lincoln D, D'Eustachio, Peter, Wu, Guanming
Published in Database : the journal of biological databases and curation (07.05.2024)
Published in Database : the journal of biological databases and curation (07.05.2024)
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Journal Article
Evaluating the predictive accuracy of curated biological pathways in a public knowledgebase
Wright, Adam J, Orlic-Milacic, Marija, Rothfels, Karen, Weiser, Joel, Trinh, Quang M, Jassal, Bijay, Haw, Robin A, Stein, Lincoln D
Published in Database : the journal of biological databases and curation (28.03.2022)
Published in Database : the journal of biological databases and curation (28.03.2022)
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Journal Article
Using the Reactome Database
Rothfels, Karen, Milacic, Marija, Matthews, Lisa, Haw, Robin, Sevilla, Cristoffer, Gillespie, Marc, Stephan, Ralf, Gong, Chuqiao, Ragueneau, Eliot, May, Bruce, Shamovsky, Veronica, Wright, Adam, Weiser, Joel, Beavers, Deidre, Conley, Patrick, Tiwari, Krishna, Jassal, Bijay, Griss, Johannes, Senff‐Ribeiro, Andrea, Brunson, Timothy, Petryszak, Robert, Hermjakob, Henning, D'Eustachio, Peter, Wu, Guanming, Stein, Lincoln
Published in Current protocols (01.04.2023)
Published in Current protocols (01.04.2023)
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Journal Article
Illuminate the Functions of Dark Proteins Using the Reactome-IDG Web Portal
Beavers, Deidre, Brunson, Timothy, Sanati, Nasim, Matthews, Lisa, Haw, Robin, Shorser, Solomon, Sevilla, Cristoffer, Viteri, Guilherme, Conley, Patrick, Rothfels, Karen, Hermjakob, Henning, Stein, Lincoln, D'Eustachio, Peter, Wu, Guanming
Published in Current protocols (01.07.2023)
Published in Current protocols (01.07.2023)
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Journal Article
Targeted sequencing in a phase III trial of luminal breast cancer: Identification of novel targets
Bartlett, John, Kalatskaya, Irina, Yousif, Fouad, Bayani, Jane, Trinh, Quang M, Heisler, Lawrence, Timms, Lee, Lee, Shawna, Buchner, Nicholas, Milacic, Marija, Rothfels, Karen, Crozier, Cheryl, Drake, Camilla, Hasenburg, Annette, Kieback, Dirk G, Rea, Daniel, McPherson, John, Boutros, Paul Christopher, Stein, Lincoln D
Published in Journal of clinical oncology (20.05.2017)
Published in Journal of clinical oncology (20.05.2017)
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Journal Article
Erratum To: COVID‐19 Disease Map, a computational knowledge repository of virus‐host interaction mechanisms
Niarakis, Anna, Kuperstein, Inna, Orta‐Resendiz, Aurelio, Singh, Vidisha, Aghamiri, Sara Sadat, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Montrone, Corinna, Monraz Gómez, Luis Cristóbal, Somers, Julia, Hoch, Matti, Scheel, Julia, Borlinghaus, Hanna, Schreiber, Falk, Montagud, Arnau, Funahashi, Akira, Hiki, Yusuke, Yamada, Takahiro G, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Messina, Francesco, Börnigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Nakonecnij, Vanessa, Vanhoefer, Jakob, Schmiester, Leonard, Wang, Muying, Ackerman, Emily E, Shoemaker, Jason E, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gökçe Yağmur, Hanspers, Kristina, Kutmon, Martina, Coort, Susan, Ehrhart, Friederike, Martens, Marvin, Pham, Nhung, Haw, Robin, Jassal, Bijay, Matthews, Lisa, Senff‐Ribeiro, Andrea, Rothfels, Karen, Shamovsky, Veronica, Stephan, Ralf, Sevilla, Cristoffer, Varusai, Thawfeek, Ravel, Jean‐Marie, Fraser, Rupsha, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Owen, Stuart, Goble, Carole, Hu, Xiaoming, Maier, Dieter, Bauch, Angela, Gyori, Benjamin M, Bachman, John A, Vega, Carlos, Grouès, Valentin, Porras, Pablo, Licata, Luana, Sacco, Francesca, Nesterova, Anastasia, Turei, Denes, Luna, Augustin, Babur, Ozgun, Soliman, Sylvain, Peña‐Chilet, Maria, Rian, Kinza, Helikar, Tomáš, Modos, Dezso, Treveil, Agatha, Olbei, Marton, De Meulder, Bertrand, Ballereau, Stephane, Dugourd, Aurélien, Naldi, Aurélien, Noël, Vincent, Calzone, Laurence, Sander, Chris, Demir, Emek, Korcsmaros, Tamas, Beckmann, Jacques S, Hasenauer, Jan, Wolkenhauer, Olaf, Willighagen, Egon L, Evelo, Chris T, Gillespie, Marc E, Valencia, Alfonso, Kitano, Hiroaki, Auffray, Charles, Balling, Rudi, Schneider, Reinhard
Published in Molecular systems biology (23.12.2021)
Published in Molecular systems biology (23.12.2021)
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Journal Article
Illuminating Dark Proteins using Reactome Pathways
Brunson, Timothy, Sanati, Nasim, Matthews, Lisa, Haw, Robin, Beavers, Deidre, Shorser, Solomon, Sevilla, Cristoffer, Viteri, Guilherme, Conley, Patrick, Rothfels, Karen, Hermjakob, Henning, Stein, Lincoln, D'Eustachio, Peter, Wu, Guanming
Published in bioRxiv : the preprint server for biology (05.06.2023)
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Published in bioRxiv : the preprint server for biology (05.06.2023)
Journal Article
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes
Orlic-Milacic, Marija, Rothfels, Karen, Matthews, Lisa, Wright, Adam, Jassal, Bijay, Shamovsky, Veronica, Trinh, Quang, Gillespie, Marc, Sevilla, Cristoffer, Tiwari, Krishna, Ragueneau, Eliot, Gong, Chuqiao, Stephan, Ralf, May, Bruce, Haw, Robin, Weiser, Joel, Beavers, Deidre, Conley, Patrick, Hermjakob, Henning, Stein, Lincoln D, D'Eustachio, Peter, Wu, Guanming
Published in bioRxiv : the preprint server for biology (21.10.2023)
Published in bioRxiv : the preprint server for biology (21.10.2023)
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Journal Article
ChatGPT usage in the Reactome curation process
Tiwari, Krishna Kumar, Matthews, Lisa, May, Bruce, Shamovsky, Veronica, Orlic-Milacic, Marija, Rothfels, Karen, Ragueneau, Eliot, Gong, Chuqiao, Stephan, Ralf, Li, Nancy, Wu, Guanming, Stein, Lincoln D, D'eustachio, Peter, Hermjakob, Henning
Published in bioRxiv (08.11.2023)
Published in bioRxiv (08.11.2023)
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