Diversity within species: interpreting strains in microbiomes
Van Rossum, Thea, Ferretti, Pamela, Maistrenko, Oleksandr M., Bork, Peer
Published in Nature reviews. Microbiology (01.09.2020)
Published in Nature reviews. Microbiology (01.09.2020)
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Journal Article
Year-Long Metagenomic Study of River Microbiomes Across Land Use and Water Quality
Van Rossum, Thea, Peabody, Michael A, Uyaguari-Diaz, Miguel I, Cronin, Kirby I, Chan, Michael, Slobodan, Jared R, Nesbitt, Matthew J, Suttle, Curtis A, Hsiao, William W L, Tang, Patrick K C, Prystajecky, Natalie A, Brinkman, Fiona S L
Published in Frontiers in microbiology (16.12.2015)
Published in Frontiers in microbiology (16.12.2015)
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Journal Article
Meconium Microbiome of Very Preterm Infants across Germany
Klopp, Jonas, Ferretti, Pamela, Meyer, Claudius U, Hilbert, Katja, Haiß, Annette, Marißen, Janina, Henneke, Philipp, Hudalla, Hannes, Pirr, Sabine, Viemann, Dorothee, Zemlin, Michael, Forslund, Sofia Kirke, Härtel, Christoph, Bork, Peer, Gehring, Stephan, Van Rossum, Thea
Published in mSphere (23.02.2022)
Published in mSphere (23.02.2022)
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Journal Article
Drivers and determinants of strain dynamics following fecal microbiota transplantation
Schmidt, Thomas S. B., Li, Simone S., Maistrenko, Oleksandr M., Akanni, Wasiu, Coelho, Luis Pedro, Dolai, Sibasish, Fullam, Anthony, Glazek, Anna M., Hercog, Rajna, Herrema, Hilde, Jung, Ferris, Kandels, Stefanie, Orakov, Askarbek, Thielemann, Roman, von Stetten, Moritz, Van Rossum, Thea, Benes, Vladimir, Borody, Thomas J., de Vos, Willem M., Ponsioen, Cyriel Y., Nieuwdorp, Max, Bork, Peer
Published in Nature medicine (01.09.2022)
Published in Nature medicine (01.09.2022)
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Journal Article
SPIRE: a Searchable, Planetary-scale mIcrobiome REsource
Schmidt, Thomas S B, Fullam, Anthony, Ferretti, Pamela, Orakov, Askarbek, Maistrenko, Oleksandr M, Ruscheweyh, Hans-Joachim, Letunic, Ivica, Duan, Yiqian, Van Rossum, Thea, Sunagawa, Shinichi, Mende, Daniel R, Finn, Robert D, Kuhn, Michael, Pedro Coelho, Luis, Bork, Peer
Published in Nucleic acids research (05.01.2024)
Published in Nucleic acids research (05.01.2024)
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Journal Article
Microbiome Analysis Across a Natural Copper Gradient at a Proposed Northern Canadian Mine Site
Van Rossum, Thea, Pylatuk, Melanie M., Osachoff, Heather L., Griffiths, Emma J., Lo, Raymond, Quach, May, Palmer, Richard, Lower, Nicola, Brinkman, Fiona S. L., Kennedy, Christopher J.
Published in Frontiers in environmental science (06.01.2016)
Published in Frontiers in environmental science (06.01.2016)
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Journal Article
Efficacy of Bifidobacterium longum, B. infantis and Lactobacillus acidophilus probiotics to prevent gut dysbiosis in preterm infants of 28+0–32+6 weeks of gestation: a randomised, placebo-controlled, double-blind, multicentre trial: the PRIMAL Clinical Study protocol
Marißen, Janina, Haiß, Annette, Meyer, Claudius, Van Rossum, Thea, Bünte, Lisa Marie, Frommhold, David, Gille, Christian, Goedicke-Fritz, Sybelle, Göpel, Wolfgang, Hudalla, Hannes, Pagel, Julia, Pirr, Sabine, Siller, Bastian, Viemann, Dorothee, Vens, Maren, König, Inke, Herting, Egbert, Zemlin, Michael, Gehring, Stephan, Bork, Peer, Henneke, Philipp, Härtel, Christoph
Published in BMJ open (21.11.2019)
Published in BMJ open (21.11.2019)
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Journal Article
Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data
ZOUBAREV, Anton, HAMER, Kelsey M, GILLIS, Jesse, PAVLIDIS, Paul, KESHAV, Kiran D, LUKE MCCARTHY, E, SANTOS, Joseph Roy C, VAN ROSSUM, Thea, MCDONALD, Cameron, HALL, Adam, XIANG WAN, LIM, Raymond
Published in Bioinformatics (01.09.2012)
Published in Bioinformatics (01.09.2012)
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Journal Article
Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes
Winsor, Geoffrey L, Van Rossum, Thea, Lo, Raymond, Khaira, Bhavjinder, Whiteside, Matthew D, Hancock, Robert E.W, Brinkman, Fiona S.L
Published in Nucleic acids research (01.01.2009)
Published in Nucleic acids research (01.01.2009)
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Journal Article
A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples
Uyaguari-Diaz, Miguel I, Chan, Michael, Chaban, Bonnie L, Croxen, Matthew A, Finke, Jan F, Hill, Janet E, Peabody, Michael A, Van Rossum, Thea, Suttle, Curtis A, Brinkman, Fiona S L, Isaac-Renton, Judith, Prystajecky, Natalie A, Tang, Patrick
Published in Microbiome (19.07.2016)
Published in Microbiome (19.07.2016)
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Journal Article
Force-Induced Polarized Mitosis of Endothelial and Smooth Muscle Cells in Arterial Remodeling
Dajnowiec, Dorota, Sabatini, Peter J.B, Van Rossum, Thea C, Lam, Jacky T.K, Zhang, Ming, Kapus, Andras, Langille, B Lowell
Published in Hypertension (Dallas, Tex. 1979) (01.07.2007)
Published in Hypertension (Dallas, Tex. 1979) (01.07.2007)
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Journal Article
NFDI4Microbiota – national research data infrastructure for microbiota research
Förstner, Konrad U., Becker, Anke, Blom, Jochen, Bork, Peer, Clavel, Thomas, Dieckmann, Marius, Goesmann, Alexander, Götz, Barbara, Gübitz, Thomas, Hufsky, Franziska, Jünemann, Sebastian, Körner, Marie-Louise, Marz, Manja, Da Rocha, Ulisses Nunes, Overmann, Jörg, Pühler, Alfred, Rebholz-Schuhmann, Dietrich, Sczyrba, Alexander, Stoye, Jens, Vandendorpe, Justine, Van Rossum, Thea, McHardy, Alice
Published in Research Ideas and Outcomes (24.08.2023)
Published in Research Ideas and Outcomes (24.08.2023)
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Journal Article
A faecal microbiota signature with high specificity for pancreatic cancer
Kartal, Ece, Schmidt, Thomas S B, Molina-Montes, Esther, Rodríguez-Perales, Sandra, Wirbel, Jakob, Maistrenko, Oleksandr M, Akanni, Wasiu A, Alashkar Alhamwe, Bilal, Alves, Renato J, Carrato, Alfredo, Erasmus, Hans-Peter, Estudillo, Lidia, Finkelmeier, Fabian, Fullam, Anthony, Glazek, Anna M, Gómez-Rubio, Paulina, Hercog, Rajna, Jung, Ferris, Kandels, Stefanie, Kersting, Stephan, Molero, Xavier, Orakov, Askarbek, Van Rossum, Thea, Torres-Ruiz, Raul, Zych, Konrad, Benes, Vladimir, Zeller, Georg, Real, Francisco X, Malats, Nuria, Malats, Núria, Real, Francisco X, deMaturana, Evangelina López, Gómez-Rubio, Paulina, Molina-Montes, Esther, Márquez, Mirari, Milne, Roger, Alfaro, Ana, Lobato, Tania, Scarpa, Aldo, Beghelli, Stefania, Sharp, Linda, Hidalgo, Manuel, Caminoa, Alejandra, Guillén-Ponce, Carmen, Rodríguez-Garrote, Mercedes, Mar Iglesias, Lucas Ilzarbe, Álvarez-Urturi, Cristina, Bessa, Xavier, Márquez, Lucía, Poves, Ignasi, Burdío, Fernando, Grande, Luis, Gimeno, Javier, Molero, Xavier, Guarner, Luisa, Balcells, Joaquin, Salcedo, Mayte, Michalski, Christoph, Esposito, Irene, Kleeff, Jörg, Kong, Bo, Huang, Jiaqui, Verbeke, Caroline, Ye, Weimin, Perea, José, Peláez, Pablo, Farré, Antoni, Mora, Josefina, Martín, Marta, Guarner, Carlos, JSancho, Francesc, yCajal, Teresa Ramón, Greenhalf, William, Murray, Liam, Cantwell, Marie, MBarberá, Víctor, Tardón, Adonina, Barneo, LuSis, Muñoz, Enrique Domínguez, Lozano, Antonio, Muñoz-Bellvís, Luís, Sayagués Manzano, JM, deMatos, AOrfao, Gress, Thomas, Buchholz, Malte, Neesse, Albrecht, Crnogorac-Jurcevic, Tatjana, Bhattacharya, Satyajit, Tabraham, Ajit, Silverman, Debra T, Easton, Douglas, Hans-Peter, Jonel Trebicka, FabianFinkelmeier, Erasmus, WenyiGuOlaf, Robert Schierwagen, Erhard, TycFrank, Kersting, Stephan, Langheinrich, Melanie, Grützmann, Robert, FWeber, Georg, Pilarsky, Christian
Published in Gut (01.07.2022)
Published in Gut (01.07.2022)
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Towards the biogeography of prokaryotic genes
Coelho, Luis Pedro, Alves, Renato, del Río, Álvaro Rodríguez, Myers, Pernille Neve, Cantalapiedra, Carlos P., Giner-Lamia, Joaquín, Schmidt, Thomas Sebastian, Mende, Daniel R., Orakov, Askarbek, Letunic, Ivica, Hildebrand, Falk, Van Rossum, Thea, Forslund, Sofia K., Khedkar, Supriya, Maistrenko, Oleksandr M., Pan, Shaojun, Jia, Longhao, Ferretti, Pamela, Sunagawa, Shinichi, Zhao, Xing-Ming, Nielsen, Henrik Bjørn, Huerta-Cepas, Jaime, Bork, Peer
Published in Nature (London) (13.01.2022)
Published in Nature (London) (13.01.2022)
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Journal Article
metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes
Van Rossum, Thea, Costea, Paul I, Paoli, Lucas, Alves, Renato, Thielemann, Roman, Sunagawa, Shinichi, Bork, Peer
Published in Bioinformatics (27.01.2022)
Published in Bioinformatics (27.01.2022)
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Journal Article
OS-073 Linking gut microbiome enterotypes and dysbiosis to liver disease severity and prognosis
Keller, Marisa Isabell, Nishijima, Suguru, Podlesny, Daniel, Kim, Chan Yeong, Robbani, Shahriyar Mahdi, Schudoma, Christian, Fullam, Anthony, Akanni, Wasiu, Orakov, Askarbek, Schmidt, Thomas Sebastian, Marotta, Federico, Letunic, Ivica, Trebicka, Jonel, Papp, Maria, Laleman, Wim, Uschner, Frank Erhard, Shawcross, Debbie L., Coenraad, Minneke J., Jalan, Rajiv, Clària, Joan, Kuhn, Michael, Van Rossum, Thea, Bork, Peer
Published in Journal of hepatology (01.06.2024)
Published in Journal of hepatology (01.06.2024)
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Journal Article
Disruption of the Gut Microbiota With Antibiotics Exacerbates Acute Vascular Rejection
Rey, Kevin, Manku, Sukhbir, Enns, Winnie, Van Rossum, Thea, Bushell, Kevin, Morin, Ryan D, Brinkman, Fiona S L, Choy, Jonathan C
Published in Transplantation (01.07.2018)
Published in Transplantation (01.07.2018)
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