Application of next generation sequencing in clinical microbiology and infection prevention
Deurenberg, Ruud H., Bathoorn, Erik, Chlebowicz, Monika A., Couto, Natacha, Ferdous, Mithila, García-Cobos, Silvia, Kooistra-Smid, Anna M.D., Raangs, Erwin C., Rosema, Sigrid, Veloo, Alida C.M., Zhou, Kai, Friedrich, Alexander W., Rossen, John W.A.
Published in Journal of biotechnology (10.02.2017)
Published in Journal of biotechnology (10.02.2017)
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Journal Article
The dominance of human coronavirus OC43 and NL63 infections in infants
Dijkman, Ronald, Jebbink, Maarten F, Gaunt, Eleanor, Rossen, John W.A, Templeton, Kate E, Kuijpers, Taco W, van der Hoek, Lia
Published in Journal of clinical virology (01.02.2012)
Published in Journal of clinical virology (01.02.2012)
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The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies [version 2; peer review: 2 approved]
Angers-Loustau, Alexandre, Petrillo, Mauro, Bengtsson-Palme, Johan, Berendonk, Thomas, Blais, Burton, Chan, Kok-Gan, Coque, Teresa M, Hammer, Paul, Heß, Stefanie, Kagkli, Dafni M, Krumbiegel, Carsten, Lanza, Val F, Madec, Jean-Yves, Naas, Thierry, O'Grady, Justin, Paracchini, Valentina, Rossen, John W.A, Ruppé, Etienne, Vamathevan, Jessica, Venturi, Vittorio, Van den Eede, Guy
Published in F1000 research (2018)
Published in F1000 research (2018)
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Journal Article
The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies
Angers-Loustau, Alexandre, Petrillo, Mauro, Bengtsson-Palme, Johan, Berendonk, Thomas, Blais, Burton, Chan, Kok-Gan, Coque, Teresa M, Hammer, Paul, Heß, Stefanie, Kagkli, Dafni M, Krumbiegel, Carsten, Lanza, Val F, Madec, Jean-Yves, Naas, Thierry, O'Grady, Justin, Paracchini, Valentina, Rossen, John W A, Ruppé, Etienne, Vamathevan, Jessica, Venturi, Vittorio, Van den Eede, Guy
Published in F1000 research (2018)
Published in F1000 research (2018)
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Journal Article
Strong Association between Respiratory Viral Infection Early after Hematopoietic Stem Cell Transplantation and the Development of Life-Threatening Acute and Chronic Alloimmune Lung Syndromes
Versluys, A.Birgitta, Rossen, John W.A, van Ewijk, Bart, Schuurman, Rob, Bierings, Marc B, Boelens, Jaap J
Published in Biology of blood and marrow transplantation (01.06.2010)
Published in Biology of blood and marrow transplantation (01.06.2010)
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Journal Article
Klebsiella pneumoniae species complex: From wastewater to the environment
Verburg, Ilse, Hernández Leal, Lucia, Waar, Karola, Rossen, John W.A., Schmitt, Heike, García-Cobos, Silvia
Published in One health (01.12.2024)
Published in One health (01.12.2024)
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Journal Article
Virulence and resistance properties of E. coli isolated from urine samples of hospitalized patients in Rio de Janeiro, Brazil – The role of mobile genetic elements
da Cruz Campos, Ana Carolina, Couto, Natacha, Lucas da Silva Andrade, Nathália, Friedrich, Alex W., de Paula Rosa, Ana Cláudia, Vieira Damasco, Paulo, Chlebowicz-Fliss, Monika A., Rossen, John W.A.
Published in International journal of medical microbiology (01.12.2020)
Published in International journal of medical microbiology (01.12.2020)
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Journal Article
Characterization of a CTX-M-15 Producing Klebsiella Pneumoniae Outbreak Strain Assigned to a Novel Sequence Type (1427)
Zhou, Kai, Lokate, Mariëtte, Deurenberg, Ruud H, Arends, Jan, Lo-Ten Foe, Jerome, Grundmann, Hajo, Rossen, John W A, Friedrich, Alexander W
Published in Frontiers in microbiology (2015)
Published in Frontiers in microbiology (2015)
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Journal Article
Reprint of “Application of next generation sequencing in clinical microbiology and infection prevention”
Deurenberg, Ruud H., Bathoorn, Erik, Chlebowicz, Monika A., Couto, Natacha, Ferdous, Mithila, García-Cobos, Silvia, Kooistra-Smid, Anna M.D., Raangs, Erwin C., Rosema, Sigrid, Veloo, Alida C.M., Zhou, Kai, Friedrich, Alexander W., Rossen, John W.A.
Published in Journal of biotechnology (20.05.2017)
Published in Journal of biotechnology (20.05.2017)
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Journal Article
Next-generation sequencing in routine clinical microbiology and infectious diseases: an ESGMD-ESGEM ESCMID postgraduate course
Aamot, Hege Vangstein, Claas, Eric C.J., Couto, Natacha, Westh, Henrik, Greub, Gilbert, Rossen, John W.A.
Published in New microbes and new infections (01.11.2022)
Published in New microbes and new infections (01.11.2022)
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Journal Article
Diarrhea, Urosepsis and Hemolytic Uremic Syndrome Caused by the Same Heteropathogenic Escherichia coli Strain
Ang, C Wim, Bouts, Antonia H M, Rossen, John W A, Van der Kuip, Martijn, Van Heerde, Marc, Bökenkamp, Arend
Published in The Pediatric infectious disease journal (01.09.2016)
Published in The Pediatric infectious disease journal (01.09.2016)
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Journal Article
Performance Evaluation of the New Roche Cobas AmpliPrep/Cobas TaqMan HIV-1 Test Version 2.0 for Quantification of Human Immunodeficiency Virus Type 1 RNA
Pas, Suzan, Rossen, John W.A, Schoener, Daniel, Thamke, Diana, Pettersson, Annika, Babiel, Reiner, Schutten, Martin
Published in Journal of Clinical Microbiology (01.04.2010)
Published in Journal of Clinical Microbiology (01.04.2010)
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Characterization of the flanking region of the Shiga toxin operon in Stx2a bacteriophages reveals a diversity of the NanS-p sialate O-acetylesterase gene
Pascal, Stefanía B., Lorenzo, Ramiro, Farías, María Victoria Nieto, Rossen, John W.A., Lucchesi, Paula M. A., Krüger, Alejandra
Published in AIMS microbiology (01.01.2023)
Published in AIMS microbiology (01.01.2023)
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Detection of a small IncX4 plasmid carrying the mcr-1.1 gene in a pig oral fluid sample by shotgun metagenomic sequencing
Schuele, Leonard, Fleres, Giuseppe, Strutzberg-Minder, Katrin, Schütze, Sabine, Löbert, Sandra, Lambrecht, Claudia, Harlizius, Jürgen, Peter, Silke, Rossen, John W.A., Couto, Natacha
Published in Journal of global antimicrobial resistance. (01.03.2021)
Published in Journal of global antimicrobial resistance. (01.03.2021)
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Interlaboratory Evaluation of Different Extraction and Real-Time PCR Methods for Detection of Coxiella burnetii DNA in Serum
Tilburg, Jeroen J.H.C, Melchers, Willem J.G, Pettersson, Annika M, Rossen, John W.A, Hermans, Mirjam H.A, van Hannen, Erik J, Nabuurs-Franssen, Marrigje H, de Vries, Maaike C, Horrevorts, Alphons M, Klaassen, Corné H.W
Published in Journal of Clinical Microbiology (01.11.2010)
Published in Journal of Clinical Microbiology (01.11.2010)
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Journal Article
Advancing One Health: Updated core competencies
Laing, Gabrielle, Duffy, Eleanor, Anderson, Neil, Antoine-Moussiaux, Nicolas, Aragrande, Maurizio, Luiz Beber, Caetano, Berezowski, John, Boriani, Elena, Canali, Massimo, Pedro Carmo, Luis, Chantziaras, Ilias, Cousquer, Glen, Meneghi, Daniele, Gloria Rodrigues Sanches da Fonseca, Ana, Garnier, Julie, Hitziger, Martin, Jaenisch, Thomas, Keune, Hans, Lajaunie, Claire, Franco Martinez, Lorena, Maudling, Rebecca, McIntyre, Marie K., McMahon, Barry J., Munoz Prieto, Alberto, Rosenbaum Nielsen, Liza, Özçelik, Ranya, Rossen, John W.A., Rüegg, Simon R., Savić, Sara, Pires Simoes, Margarida, Thomson, Deborah J., Tomassone, Laura, Tvarijonaviciute, Asta, Vilhena, Manuela, Vogler, Barbara, Häsler, Barbara
Published in CABI One Health (03.01.2023)
Published in CABI One Health (03.01.2023)
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Characterization of fosfomycin heteroresistance among multidrug-resistant Escherichia coli isolates from hospitalized patients in Rio de Janeiro, Brazil
Campos, Ana Carolina da C., Andrade, Nathália L., Couto, Natacha, Mutters, Nico T., de Vos, Marjon, Rosa, Ana Cláudia de P., Damasco, Paulo V., Lo Ten Foe, Jerome R., Friedrich, Alex W., Chlebowicz-Flissikowska, Monika A., Rossen, John W.A.
Published in Journal of global antimicrobial resistance. (01.09.2020)
Published in Journal of global antimicrobial resistance. (01.09.2020)
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Evaluation of yield of currently available diagnostics by sample type to optimize detection of respiratory pathogens in patients with a community‐acquired pneumonia
Huijskens, Elisabeth G. W., Rossen, John W. A., Kluytmans, Jan A. J. W., Zanden, Adri G. M., Koopmans, Marion
Published in Influenza and other respiratory viruses (01.03.2014)
Published in Influenza and other respiratory viruses (01.03.2014)
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