Breaking Down the Bottlebrush: Atomically Detailed Structural Dynamics of Mucins
Kearns, Fiona L., Rosenfeld, Mia A., Amaro, Rommie E.
Published in Journal of chemical information and modeling (28.10.2024)
Published in Journal of chemical information and modeling (28.10.2024)
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Simulation-driven design of stabilized SARS-CoV-2 spike S2 immunogens
Nuqui, Xandra, Casalino, Lorenzo, Zhou, Ling, Shehata, Mohamed, Wang, Albert, Tse, Alexandra L., Ojha, Anupam A., Kearns, Fiona L., Rosenfeld, Mia A., Miller, Emily Happy, Acreman, Cory M., Ahn, Surl-Hee, Chandran, Kartik, McLellan, Jason S., Amaro, Rommie E.
Published in Nature communications (27.08.2024)
Published in Nature communications (27.08.2024)
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Glycoproteomic landscape and structural dynamics of TIM family immune checkpoints enabled by mucinase SmE
Chongsaritsinsuk, Joann, Steigmeyer, Alexandra D., Mahoney, Keira E., Rosenfeld, Mia A., Lucas, Taryn M., Smith, Courtney M., Li, Alice, Ince, Deniz, Kearns, Fiona L., Battison, Alexandria S., Hollenhorst, Marie A., Judy Shon, D., Tiemeyer, Katherine H., Attah, Victor, Kwon, Catherine, Bertozzi, Carolyn R., Ferracane, Michael J., Lemmon, Mark A., Amaro, Rommie E., Malaker, Stacy A.
Published in Nature communications (04.10.2023)
Published in Nature communications (04.10.2023)
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An integrated view of p53 dynamics, function, and reactivation
Demir, Özlem, Barros, Emilia P, Offutt, Tavina L, Rosenfeld, Mia, Amaro, Rommie E
Published in Current opinion in structural biology (01.04.2021)
Published in Current opinion in structural biology (01.04.2021)
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T-cell immunoglobulin and mucin-domain containing protein (TIM) structural dynamics revealed by molecular dynamics simulations
Rosenfeld, Mia A., Kearns, Fiona L., Chongsaritsinsuk, Joan, Steigmeyer, Alexandra, Mahoney, Kiera E., Lucas, Taryn, Ince, Deniz, Battison, Alexandria, Hollenhorst, Marie A., Shon, D. Judy, Attah, Victor, Kwon, Catherine, Bertozzi, Carolyn R., Malaker, Stacy A., Amaro, Rommie E.
Published in Biophysical journal (10.02.2023)
Published in Biophysical journal (10.02.2023)
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Targeted protein S-nitrosylation of ACE2 inhibits SARS-CoV-2 infection
Oh, Chang-ki, Nakamura, Tomohiro, Beutler, Nathan, Zhang, Xu, Piña-Crespo, Juan, Talantova, Maria, Ghatak, Swagata, Trudler, Dorit, Carnevale, Lauren N., McKercher, Scott R., Bakowski, Malina A., Diedrich, Jolene K., Roberts, Amanda J., Woods, Ashley K., Chi, Victor, Gupta, Anil K., Rosenfeld, Mia A., Kearns, Fiona L., Casalino, Lorenzo, Shaabani, Namir, Liu, Hejun, Wilson, Ian A., Amaro, Rommie E., Burton, Dennis R., Yates, John R., Becker, Cyrus, Rogers, Thomas F., Chatterjee, Arnab K., Lipton, Stuart A.
Published in Nature chemical biology (01.03.2023)
Published in Nature chemical biology (01.03.2023)
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Journal Article
GlycoGrip: Cell Surface-Inspired Universal Sensor for Betacoronaviruses
Kim, Sang Hoon, Kearns, Fiona L, Rosenfeld, Mia A, Casalino, Lorenzo, Papanikolas, Micah J, Simmerling, Carlos, Amaro, Rommie E, Freeman, Ronit
Published in ACS central science (26.01.2022)
Published in ACS central science (26.01.2022)
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SARS-CoV-2 evolved variants optimize binding to cellular glycocalyx
Kim, Sang Hoon, Kearns, Fiona L., Rosenfeld, Mia A., Votapka, Lane, Casalino, Lorenzo, Papanikolas, Micah, Amaro, Rommie E., Freeman, Ronit
Published in Cell reports physical science (19.04.2023)
Published in Cell reports physical science (19.04.2023)
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Journal Article
NIDCD/VA hearing aid clinical trial and follow-up: background
Bratt, Gene W, Rosenfeld, Mia A L, Williams, David W
Published in Journal of the American Academy of Audiology (01.04.2007)
Published in Journal of the American Academy of Audiology (01.04.2007)
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Journal Article
Glycoproteomic landscape and structural dynamics of TIM family immune checkpoints enabled by mucinase SmE
Chongsaritsinsuk, Joann, Steigmeyer, Alexandra D, Mahoney, Keira E, Rosenfeld, Mia A, Lucas, Taryn M, Ince, Deniz, Kearns, Fiona L, Battison, Alexandria S, Hollenhorst, Marie A, Shon, D Judy, Tiemeyer, Katherine H, Attah, Victor, Kwon, Catherine, Bertozzi, Carolyn R, Ferracane, Michael J, Amaro, Rommie E, Malaker, Stacy A
Published in bioRxiv (03.02.2023)
Published in bioRxiv (03.02.2023)
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Computational investigation of glycosaminoglycan cofactors in SARS-CoV-2 infection dynamics
Rosenfeld, Mia A., Kearns, Fiona L., Hoon Kim, Sang, Casalino, Lorenzo, Papanikolas, Micah, Simmerling, Carlos, Amaro, Rommie E., Freeman, Ronit
Published in Biophysical journal (11.02.2022)
Published in Biophysical journal (11.02.2022)
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Journal Article
Probing key interactions between SARS-CoV-2 spike and heparan sulfate
Kearns, Fiona L., Rosenfeld, Mia, Hoon Kim, Sang, Casalino, Lorenzo, Papanikolas, Micah, Simmerling, Carlos, Freeman, Ronit, Amaro, Rommie E.
Published in Biophysical journal (11.02.2022)
Published in Biophysical journal (11.02.2022)
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Journal Article
Glycoproteomic landscape and structural dynamics of TIM family immune checkpoints enabled by mucinase SME and molecular dynamics simulations
Rosenfeld, Mia A., Kearns, Fiona L., Chongsaritsinsuk, Joann, Steigmeyer, Alexandra, Mahoney, Keira E., Lucas, Taryn M., Ince, Deniz, Battison, Alexandria, Hollenhorst, Marie A., Shon, D. Judy, Bertozzi, Carolyn R., Farracane, Michael J., Lemmon, Mark A., Malaker, Stacy A., Amaro, Rommie E.
Published in Biophysical journal (08.02.2024)
Published in Biophysical journal (08.02.2024)
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Journal Article
Harnessing molecular simulations to design stabilized SARS-CoV-2 S2 antigens
Casalino, Lorenzo, Nuqui, Xandra, Zhou, Ling, Shehata, Mohamed, Wang, Albert, Tse, Alexandra L., Ojha, Anupam A., Kearns, Fiona L., Rosenfeld, Mia A., Miller, Emily H., Acreman, Cory M., Ahn, Surl-Hee, Chandran, Kartik, McLellan, Jason S., Amaro, Rommie E.
Published in Biophysical journal (08.02.2024)
Published in Biophysical journal (08.02.2024)
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Journal Article
Targeted protein S-nitrosylation of ACE2 as potential treatment to prevent spread of SARS-CoV-2 infection
Oh, Chang-Ki, Nakamura, Tomohiro, Beutler, Nathan, Zhang, Xu, Piña-Crespo, Juan, Talantova, Maria, Ghatak, Swagata, Trudler, Dorit, Carnevale, Lauren N, McKercher, Scott R, Bakowski, Malina A, Diedrich, Jolene K, Roberts, Amanda J, Woods, Ashley K, Chi, Victor, Gupta, Anil K, Rosenfeld, Mia A, Kearns, Fiona L, Casalino, Lorenzo, Shaabani, Namir, Liu, Hejun, Wilson, Ian A, Amaro, Rommie E, Burton, Dennis R, Yates, John R, Becker, Cyrus, Rogers, Thomas F, Chatterjee, Arnab K, Lipton, Stuart A
Published in bioRxiv (05.04.2022)
Published in bioRxiv (05.04.2022)
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Stabilized SARS-CoV-2 spike S2 immunogens designed using insights from enhanced sampling molecular dynamics simulations
Nuqui, Xandra, Casalino, Lorenzo, Shehata, Mohamed, Ojha, Anupam A., Kearns, Fiona L., Rosenfeld, Mia, McLellan, Jason S., Amaro, Rommie E.
Published in Biophysical journal (10.02.2023)
Published in Biophysical journal (10.02.2023)
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Journal Article
COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol
Dommer, Abigail, Casalino, Lorenzo, Kearns, Fiona, Rosenfeld, Mia, Wauer, Nicholas, Ahn, Surl-Hee, Russo, John, Oliveira, Sofia, Morris, Clare, Bogetti, Anthony, Trifan, Anda, Brace, Alexander, Sztain, Terra, Clyde, Austin, Ma, Heng, Chennubhotla, Chakra, Lee, Hyungro, Turilli, Matteo, Khalid, Syma, Tamayo-Mendoza, Teresa, Welborn, Matthew, Christensen, Anders, Smith, Daniel GA, Qiao, Zhuoran, Sirumalla, Sai K, O’Connor, Michael, Manby, Frederick, Anandkumar, Anima, Hardy, David, Phillips, James, Stern, Abraham, Romero, Josh, Clark, David, Dorrell, Mitchell, Maiden, Tom, Huang, Lei, McCalpin, John, Woods, Christopher, Gray, Alan, Williams, Matt, Barker, Bryan, Rajapaksha, Harinda, Pitts, Richard, Gibbs, Tom, Stone, John, Zuckerman, Daniel M., Mulholland, Adrian J., Miller, Thomas, Jha, Shantenu, Ramanathan, Arvind, Chong, Lillian, Amaro, Rommie E
Published in The international journal of high performance computing applications (01.01.2023)
Published in The international journal of high performance computing applications (01.01.2023)
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