Comprehensive identification of somatic nucleotide variants in human brain tissue
Wang, Yifan, Bae, Taejeong, Thorpe, Jeremy, Sherman, Maxwell A, Jones, Attila G, Cho, Sean, Daily, Kenneth, Dou, Yanmei, Ganz, Javier, Galor, Alon, Lobon, Irene, Pattni, Reenal, Rosenbluh, Chaggai, Tomasi, Simone, Tomasini, Livia, Yang, Xiaoxu, Zhou, Bo, Akbarian, Schahram, Ball, Laurel L, Bizzotto, Sara, Emery, Sarah B, Doan, Ryan, Fasching, Liana, Jang, Yeongjun, Juan, David, Lizano, Esther, Luquette, Lovelace J, Moldovan, John B, Narurkar, Rujuta, Oetjens, Matthew T, Rodin, Rachel E, Sekar, Shobana, Shin, Joo Heon, Soriano, Eduardo, Straub, Richard E, Zhou, Weichen, Chess, Andrew, Gleeson, Joseph G, Marquès-Bonet, Tomas, Park, Peter J, Peters, Mette A, Pevsner, Jonathan, Walsh, Christopher A, Weinberger, Daniel R, Vaccarino, Flora M, Moran, John V, Urban, Alexander E, Kidd, Jeffrey M, Mills, Ryan E, Abyzov, Alexej
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Published in Genome Biology (29.03.2021)
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Published in Cell death & disease (18.11.2022)
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Intersection of diverse neuronal genomes and neuropsychiatric disease: The Brain Somatic Mosaicism Network
McConnell, Michael J., Moran, John V., Abyzov, Alexej, Akbarian, Schahram, Bae, Taejeong, Cortes-Ciriano, Isidro, Erwin, Jennifer A., Fasching, Liana, Flasch, Diane A., Freed, Donald, Ganz, Javier, Jaffe, Andrew E., Kwan, Kenneth Y., Kwon, Minseok, Lodato, Michael A., Mills, Ryan E., Paquola, Apua C. M., Rodin, Rachel E., Rosenbluh, Chaggai, Sestan, Nenad, Sherman, Maxwell A., Shin, Joo Heon, Song, Saera, Straub, Richard E., Thorpe, Jeremy, Weinberger, Daniel R., Urban, Alexander E., Zhou, Bo, Gage, Fred H., Lehner, Thomas, Senthil, Geetha, A. Walsh, Christopher, Chess, Andrew, Courchesne, Eric, Gleeson, Joseph G., Kidd, Jeffrey M., Park, Peter J., Pevsner, Jonathan, Vaccarino, Flora M.
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Exome sequencing for structurally normal fetuses-yields and ethical issues
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Published in European journal of human genetics : EJHG (01.02.2023)
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The landscape of somatic mutation in cerebral cortex of autistic and neurotypical individuals revealed by ultra-deep whole-genome sequencing
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Published in Nature neuroscience (01.02.2021)
Published in Nature neuroscience (01.02.2021)
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Analysis of somatic mutations in 131 human brains reveals aging-associated hypermutability
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Published in Science (American Association for the Advancement of Science) (29.07.2022)
Published in Science (American Association for the Advancement of Science) (29.07.2022)
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Somatic mosaicism in schizophrenia brains reveals prenatal mutational processes
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Published in Science (American Association for the Advancement of Science) (11.10.2024)
Published in Science (American Association for the Advancement of Science) (11.10.2024)
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Global landscape and genetic regulation of RNA editing in cortical samples from individuals with schizophrenia
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Published in Nature neuroscience (01.09.2019)
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Published in Nature (London) (28.04.2022)
Published in Nature (London) (28.04.2022)
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Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes
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Published in Nature communications (15.06.2015)
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Control-independent mosaic single nucleotide variant detection with DeepMosaic
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Metagenomic sequencing for investigation of a national keratoconjunctivitis outbreak, Israel, 2022
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Published in Euro surveillance : bulletin européen sur les maladies transmissibles (03.08.2023)
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Cocaine-Induced Chromatin Modifications Associate With Increased Expression and Three-Dimensional Looping of Auts2
Engmann, Olivia, Labonté, Benoit, Mitchell, Amanda, Bashtrykov, Pavel, Calipari, Erin S, Rosenbluh, Chaggai, Loh, Yong-Hwee E, Walker, Deena M, Burek, Dominika, Hamilton, Peter J, Issler, Orna, Neve, Rachael L, Turecki, Gustavo, Hurd, Yasmin, Chess, Andrew, Shen, Li, Mansuy, Isabelle, Jeltsch, Albert, Akbarian, Schahram, Nestler, Eric J
Published in Biological psychiatry (1969) (01.12.2017)
Published in Biological psychiatry (1969) (01.12.2017)
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Mapping recurrent mosaic copy number variation in human neurons
Sun, Chen, Kathuria, Kunal, Emery, Sarah B., Kim, ByungJun, Burbulis, Ian E., Shin, Joo Heon, Weinberger, Daniel R., Moran, John V., Kidd, Jeffrey M., Mills, Ryan E., McConnell, Michael J.
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Functional annotation of rare structural variation in the human brain
Han, Lide, Zhao, Xuefang, Benton, Mary Lauren, Perumal, Thaneer, Collins, Ryan L., Hoffman, Gabriel E., Johnson, Jessica S., Sloofman, Laura, Wang, Harold Z., Stone, Matthew R., Brennand, Kristen J., Brand, Harrison, Sieberts, Solveig K., Marenco, Stefano, Peters, Mette A., Lipska, Barbara K., Roussos, Panos, Capra, John A., Talkowski, Michael, Ruderfer, Douglas M.
Published in Nature communications (12.06.2020)
Published in Nature communications (12.06.2020)
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Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia
Zhu, Xiaowei, Zhou, Bo, Pattni, Reenal, Gleason, Kelly, Tan, Chunfeng, Kalinowski, Agnieszka, Sloan, Steven, Fiston-Lavier, Anna-Sophie, Mariani, Jessica, Petrov, Dmitri, Barres, Ben A., Duncan, Laramie, Abyzov, Alexej, Vogel, Hannes, Moran, John V., Vaccarino, Flora M., Tamminga, Carol A., Levinson, Douglas F., Urban, Alexander E.
Published in Nature neuroscience (01.02.2021)
Published in Nature neuroscience (01.02.2021)
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Large eQTL meta-analysis reveals differing patterns between cerebral cortical and cerebellar brain regions
Sieberts, Solveig K., Perumal, Thanneer M., Carrasquillo, Minerva M., Allen, Mariet, Reddy, Joseph S., Hoffman, Gabriel E., Dang, Kristen K., Calley, John, Ebert, Philip J., Eddy, James, Wang, Xue, Greenwood, Anna K., Mostafavi, Sara, Omberg, Larsson, Peters, Mette A., Logsdon, Benjamin A., De Jager, Philip L., Ertekin-Taner, Nilüfer, Mangravite, Lara M.
Published in Scientific data (12.10.2020)
Published in Scientific data (12.10.2020)
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Author Correction: Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia
Zhu, Xiaowei, Zhou, Bo, Pattni, Reenal, Gleason, Kelly, Tan, Chunfeng, Kalinowski, Agnieszka, Sloan, Steven, Fiston-Lavier, Anna-Sophie, Mariani, Jessica, Petrov, Dmitri, Barres, Ben A., Duncan, Laramie, Abyzov, Alexej, Vogel, Hannes, Moran, John V., Vaccarino, Flora M., Tamminga, Carol A., Levinson, Douglas F., Urban, Alexander E.
Published in Nature neuroscience (01.10.2023)
Published in Nature neuroscience (01.10.2023)
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Author Correction: The landscape of somatic mutation in cerebral cortex of autistic and neurotypical individuals revealed by ultra-deep whole-genome sequencing
Rodin, Rachel E., Dou, Yanmei, Kwon, Minseok, Sherman, Maxwell A., D’Gama, Alissa M., Doan, Ryan N., Rento, Lariza M., Girskis, Kelly M., Bohrson, Craig L., Kim, Sonia N., Nadig, Ajay, Luquette, Lovelace J., Gulhan, Doga C., Park, Peter J., Walsh, Christopher A.
Published in Nature neuroscience (01.10.2023)
Published in Nature neuroscience (01.10.2023)
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