Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma
Zhao, Junfei, Chen, Andrew X, Gartrell, Robyn D, Silverman, Andrew M, Aparicio, Luis, Chu, Tim, Bordbar, Darius, Shan, David, Samanamud, Jorge, Mahajan, Aayushi, Filip, Ioan, Orenbuch, Rose, Goetz, Morgan, Yamaguchi, Jonathan T, Cloney, Michael, Horbinski, Craig, Lukas, Rimas V, Raizer, Jeffrey, Rae, Ali I, Yuan, Jinzhou, Canoll, Peter, Bruce, Jeffrey N, Saenger, Yvonne M, Sims, Peter, Iwamoto, Fabio M, Sonabend, Adam M, Rabadan, Raul
Published in Nature medicine (01.03.2019)
Published in Nature medicine (01.03.2019)
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Journal Article
arcasHLA: high-resolution HLA typing from RNAseq
Orenbuch, Rose, Filip, Ioan, Comito, Devon, Shaman, Jeffrey, Pe’er, Itsik, Rabadan, Raul
Published in Bioinformatics (01.01.2020)
Published in Bioinformatics (01.01.2020)
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Journal Article
Pervasiveness of HLA allele-specific expression loss across tumor types
Filip, Ioan, Wang, Anqi, Kravets, Oleksandr, Orenbuch, Rose, Zhao, Junfei, Perea-Chamblee, Tomin E, Manji, Gulam A, López de Maturana, Evangelina, Malats, Núria, Olive, Kenneth P, Rabadan, Raul
Published in Genome medicine (09.02.2023)
Published in Genome medicine (09.02.2023)
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Journal Article
Author Correction: Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma
Zhao, Junfei, Chen, Andrew X, Gartrell, Robyn D, Silverman, Andrew M, Aparicio, Luis, Chu, Tim, Bordbar, Darius, Shan, David, Samanamud, Jorge, Mahajan, Aayushi, Filip, Ioan, Orenbuch, Rose, Goetz, Morgan, Yamaguchi, Jonathan T, Cloney, Michael, Horbinski, Craig, Lukas, Rimas V, Raizer, Jeffrey, Rae, Ali I, Yuan, Jinzhou, Canoll, Peter, Bruce, Jeffrey N, Saenger, Yvonne M, Sims, Peter, Iwamoto, Fabio M, Sonabend, Adam M, Rabadan, Raul
Published in Nature medicine (01.06.2019)
Published in Nature medicine (01.06.2019)
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Journal Article
Guidelines for releasing a variant effect predictor
Livesey, Benjamin J, Badonyi, Mihaly, Dias, Mafalda, Frazer, Jonathan, Kumar, Sushant, Lindorff-Larsen, Kresten, McCandlish, David M, Rose Orenbuch, Shearer, Courtney A, Muffley, Lara, eman, Julia, Glazer, Andrew M, Lehner, Ben, Marks, Debora S, Roth, Frederick P, Rubin, Alan F, Starita, Lea M, Marsh, Joseph A
Published in arXiv.org (16.04.2024)
Published in arXiv.org (16.04.2024)
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Journal Article
HLA Typing from RNA Sequencing and Applications to Cancer
Orenbuch, Rose, Filip, Ioan, Rabadan, Raul
Published in Methods in molecular biology (Clifton, N.J.) (2020)
Published in Methods in molecular biology (Clifton, N.J.) (2020)
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Journal Article
Deep generative modeling of the human proteome reveals over a hundred novel genes involved in rare genetic disorders
Orenbuch, Rose, Kollasch, Aaron W, Spinner, Hansen D, Shearer, Courtney A, Hopf, Thomas A, Franceschi, Dinko, Dias, Mafalda, Frazer, Jonathan, Marks, Debora S
Published in medRxiv : the preprint server for health sciences (28.11.2023)
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Published in medRxiv : the preprint server for health sciences (28.11.2023)
Journal Article
Deep generative modeling of the human proteome reveals over a hundred novel genes involved in rare genetic disorders
Orenbuch, Rose, Kollasch, Aaron W, Spinner, Hansen D, Shearer, Courtney A, Hopf, Thomas A, Franceschi, Dinko, Dias, Mafalda, Frazer, Jonathan, Marks, Debora S
Published in Research square (04.01.2024)
Published in Research square (04.01.2024)
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Journal Article
ProteinGym: Large-Scale Benchmarks for Protein Design and Fitness Prediction
Notin, Pascal, Kollasch, Aaron W, Ritter, Daniel, van Niekerk, Lood, Paul, Steffanie, Spinner, Hansen, Rollins, Nathan, Shaw, Ada, Weitzman, Ruben, Frazer, Jonathan, Dias, Mafalda, Franceschi, Dinko, Orenbuch, Rose, Gal, Yarin, Marks, Debora S
Published in bioRxiv : the preprint server for biology (08.12.2023)
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Published in bioRxiv : the preprint server for biology (08.12.2023)
Journal Article
Guidelines for releasing a variant effect predictor
Livesey, Benjamin J, Badonyi, Mihaly, Dias, Mafalda, Frazer, Jonathan, Kumar, Sushant, Lindorff-Larsen, Kresten, McCandlish, David M, Orenbuch, Rose, Shearer, Courtney A, Muffley, Lara, Foreman, Julia, Glazer, Andrew M, Lehner, Ben, Marks, Debora S, Roth, Frederick P, Rubin, Alan F, Starita, Lea M, Marsh, Joseph A
Published in ArXiv.org (16.04.2024)
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Published in ArXiv.org (16.04.2024)
Journal Article
Guidelines for releasing a variant effect predictor
Livesey, Benjamin J, Badonyi, Mihaly, Dias, Mafalda, Frazer, Jonathan, Kumar, Sushant, Lindorff-Larsen, Kresten, McCandlish, David M, Orenbuch, Rose, Shearer, Courtney A, Muffley, Lara, eman, Julia, Glazer, Andrew M, Lehner, Ben, Marks, Debora S, Roth, Frederick P, Rubin, Alan F, Starita, Lea M, Marsh, Joseph A
Published in ArXiv (16.04.2024)
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Published in ArXiv (16.04.2024)
Paper
arcasHLA: high resolution HLA typing from RNA seq
Rose Orenbuch, Filip, Ioan, Comito, Devon, Shaman, Jeffrey, Pe'er, Itsik, Rabadan, Raul
Published in bioRxiv (03.12.2018)
Published in bioRxiv (03.12.2018)
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