cgMSI: pathogen detection within species from nanopore metagenomic sequencing data
Zhu, Xu, Zhao, Lili, Huang, Lihong, Yang, Wenxian, Wang, Liansheng, Yu, Rongshan
Published in BMC bioinformatics (12.10.2023)
Published in BMC bioinformatics (12.10.2023)
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Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma
Cui, Chuanliang, Xu, Canqiang, Yang, Wenxian, Chi, Zhihong, Sheng, Xinan, Si, Lu, Xie, Yihong, Yu, Jinyu, Wang, Shun, Yu, Rongshan, Guo, Jun, Kong, Yan
Published in Npj genomic medicine (04.02.2021)
Published in Npj genomic medicine (04.02.2021)
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Deepfakes: A new threat to image fabrication in scientific publications?
Wang, Liansheng, Zhou, Lianyu, Yang, Wenxian, Yu, Rongshan
Published in Patterns (New York, N.Y.) (13.05.2022)
Published in Patterns (New York, N.Y.) (13.05.2022)
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Community assessment of methods to deconvolve cellular composition from bulk gene expression
White, Brian S., de Reyniès, Aurélien, Newman, Aaron M., Waterfall, Joshua J., Lamb, Andrew, Petitprez, Florent, Lin, Yating, Yu, Rongshan, Guerrero-Gimenez, Martin E., Domanskyi, Sergii, Monaco, Gianni, Chung, Verena, Banerjee, Jineta, Derrick, Daniel, Valdeolivas, Alberto, Li, Haojun, Xiao, Xu, Wang, Shun, Zheng, Frank, Yang, Wenxian, Catania, Carlos A., Lang, Benjamin J., Bertus, Thomas J., Piermarocchi, Carlo, Caruso, Francesca P., Ceccarelli, Michele, Yu, Thomas, Guo, Xindi, Bletz, Julie, Coller, John, Maecker, Holden, Duault, Caroline, Shokoohi, Vida, Patel, Shailja, Liliental, Joanna E., Simon, Stockard, Saez-Rodriguez, Julio, Heiser, Laura M., Guinney, Justin, Gentles, Andrew J.
Published in Nature communications (27.08.2024)
Published in Nature communications (27.08.2024)
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Dice-XMBD: Deep Learning-Based Cell Segmentation for Imaging Mass Cytometry
Xiao, Xu, Qiao, Ying, Jiao, Yudi, Fu, Na, Yang, Wenxian, Wang, Liansheng, Yu, Rongshan, Han, Jiahuai
Published in Frontiers in genetics (15.09.2021)
Published in Frontiers in genetics (15.09.2021)
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Quantifying the benefits to consumers for demand response with a statistical elasticity model
Yang, Wenxian, Yu, Rongshan, Nambiar, Milashini
Published in IET generation, transmission & distribution (01.03.2014)
Published in IET generation, transmission & distribution (01.03.2014)
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Deep representation features from DreamDIAXMBD improve the analysis of data-independent acquisition proteomics
Gao, Mingxuan, Yang, Wenxian, Li, Chenxin, Chang, Yuqing, Liu, Yachen, He, Qingzu, Zhong, Chuan-Qi, Shuai, Jianwei, Yu, Rongshan, Han, Jiahuai
Published in Communications biology (14.10.2021)
Published in Communications biology (14.10.2021)
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UltraStrain: An NGS-Based Ultra Sensitive Strain Typing Method for Salmonella enterica
Yang, Wenxian, Huang, Lihong, Shi, Chong, Wang, Liansheng, Yu, Rongshan
Published in Frontiers in genetics (03.04.2019)
Published in Frontiers in genetics (03.04.2019)
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Journal Article
Dear-DIAXMBD: Deep Autoencoder Enables Deconvolution of Data-Independent Acquisition Proteomics
He, Qingzu, Zhong, Chuan-Qi, Li, Xiang, Guo, Huan, Li, Yiming, Gao, Mingxuan, Yu, Rongshan, Liu, Xianming, Zhang, Fangfei, Guo, Donghui, Ye, Fangfu, Guo, Tiannan, Shuai, Jianwei, Han, Jiahuai
Published in Research (Washington) (01.01.2023)
Published in Research (Washington) (01.01.2023)
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Multiplexed imaging mass cytometry reveals distinct tumor-immune microenvironments linked to immunotherapy responses in melanoma
Xiao, Xu, Guo, Qian, Cui, Chuanliang, Lin, Yating, Zhang, Lei, Ding, Xin, Li, Qiyuan, Wang, Minshu, Yang, Wenxian, Kong, Yan, Yu, Rongshan
Published in Communications medicine (21.10.2022)
Published in Communications medicine (21.10.2022)
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Open Problems in Extracellular RNA Data Analysis: Insights From an ERCC Online Workshop
Alexander, Roger P, Kitchen, Robert R, Tosar, Juan Pablo, Roth, Matthew, Mestdagh, Pieter, Max, Klaas E A, Rozowsky, Joel, Kaczor-Urbanowicz, Karolina Elżbieta, Chang, Justin, Balaj, Leonora, Losic, Bojan, Van Nostrand, Eric L, LaPlante, Emily, Mateescu, Bogdan, White, Brian S, Yu, Rongshan, Milosavljevic, Aleksander, Stolovitzky, Gustavo, Spengler, Ryan M
Published in Frontiers in genetics (03.01.2022)
Published in Frontiers in genetics (03.01.2022)
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