Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs
Thomas-Chollier, Morgane, Hufton, Andrew, Heinig, Matthias, O'Keeffe, Sean, Masri, Nassim El, Roider, Helge G, Manke, Thomas, Vingron, Martin
Published in Nature protocols (01.12.2011)
Published in Nature protocols (01.12.2011)
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Journal Article
Parallel single-cell and bulk transcriptome analyses reveal key features of the gastric tumor microenvironment
Kang, Boxi, Camps, Jordi, Fan, Biao, Jiang, Hongpeng, Ibrahim, Mahmoud M, Hu, Xueda, Qin, Shishang, Kirchhoff, Dennis, Chiang, Derek Y, Wang, Shan, Ye, Yingjiang, Shen, Zhanlong, Bu, Zhaode, Zhang, Zemin, Roider, Helge G
Published in Genome Biology (22.12.2022)
Published in Genome Biology (22.12.2022)
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Journal Article
Meta-Analysis of Human Cancer Single-Cell RNA-Seq Datasets Using the IMMUcan Database
Camps, Jordi, Noël, Floriane, Liechti, Robin, Massenet-Regad, Lucile, Rigade, Sidwell, Götz, Lou, Hoffmann, Caroline, Amblard, Elise, Saichi, Melissa, Ibrahim, Mahmoud M, Pollard, Jack, Medvedovic, Jasna, Roider, Helge G, Soumelis, Vassili
Published in Cancer research (Chicago, Ill.) (03.02.2023)
Published in Cancer research (Chicago, Ill.) (03.02.2023)
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Journal Article
Cellenium-a scalable and interactive visual analytics app for exploring multimodal single-cell data
Jahn, Carsten, Ibrahim, Mahmoud, Busch, Jannis, Lin, Qiong, Manchanda, Himanshu, Mohr, Hagen, Plischke, Dan, Roider, Helge G, Steffen, Andreas
Published in Bioinformatics (Oxford, England) (01.06.2023)
Published in Bioinformatics (Oxford, England) (01.06.2023)
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Journal Article
Drug2Gene: an exhaustive resource to explore effectively the drug-target relation network
Roider, Helge G, Pavlova, Nadia, Kirov, Ivaylo, Slavov, Stoyan, Slavov, Todor, Uzunov, Zlatyo, Weiss, Bertram
Published in BMC bioinformatics (11.03.2014)
Published in BMC bioinformatics (11.03.2014)
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Journal Article
PASTAA: identifying transcription factors associated with sets of co-regulated genes
Roider, Helge G., Manke, Thomas, O'Keeffe, Sean, Vingron, Martin, Haas, Stefan A.
Published in Bioinformatics (15.02.2009)
Published in Bioinformatics (15.02.2009)
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Journal Article
Predicting transcription factor affinities to DNA from a biophysical model
Roider, Helge G., Kanhere, Aditi, Manke, Thomas, Vingron, Martin
Published in Bioinformatics (15.01.2007)
Published in Bioinformatics (15.01.2007)
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Journal Article
Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing
Guo, Xinyi, Zhang, Yuanyuan, Zheng, Liangtao, Zheng, Chunhong, Song, Jintao, Zhang, Qiming, Kang, Boxi, Liu, Zhouzerui, Jin, Liang, Xing, Rui, Gao, Ranran, Zhang, Lei, Dong, Minghui, Hu, Xueda, Ren, Xianwen, Kirchhoff, Dennis, Roider, Helge Gottfried, Yan, Tiansheng, Zhang, Zemin
Published in Nature medicine (01.07.2018)
Published in Nature medicine (01.07.2018)
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Journal Article
Statistical modeling of transcription factor binding affinities predicts regulatory interactions
Manke, Thomas, Roider, Helge G, Vingron, Martin
Published in PLoS computational biology (21.03.2008)
Published in PLoS computational biology (21.03.2008)
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Journal Article
A trans -acting locus regulates an anti-viral expression network and type 1 diabetes risk
Hubner, Norbert, Cook, Stuart A, Heinig, Matthias, Petretto, Enrico, Wallace, Chris, Bottolo, Leonardo, Rotival, Maxime, Lu, Han, Li, Yoyo, Sarwar, Rizwan, Langley, Sarah R, Bauerfeind, Anja, Hummel, Oliver, Lee, Young-Ae, Paskas, Svetlana, Rintisch, Carola, Saar, Kathrin, Cooper, Jason, Buchan, Rachel, Gray, Elizabeth E, Cyster, Jason G, Erdmann, Jeanette, Hengstenberg, Christian, Maouche, Seraya, Ouwehand, Willem H, Rice, Catherine M, Samani, Nilesh J, Schunkert, Heribert, Goodall, Alison H, Schulz, Herbert, Roider, Helge G, Vingron, Martin, Blankenberg, Stefan, Münzel, Thomas, Zeller, Tanja, Szymczak, Silke, Ziegler, Andreas, Tiret, Laurence, Smyth, Deborah J, Pravenec, Michal, Aitman, Timothy J, Cambien, Francois, Clayton, David, Todd, John A
Published in Nature (London) (23.09.2010)
Published in Nature (London) (23.09.2010)
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Journal Article
Selective depletion of tumor-infiltrating regulatory T cells with BAY 3375968, a novel Fc-optimized anti-CCR8 antibody
Roider, Helge G., Hoff, Sabine, Tseng, Su-Yi, Berndt, Sandra, Trautwein, Mark, Filarsky, Katharina, Gritzan, Uwe, Camps, Jordi, Nadler, Wiebke Maria, Grudzinska-Goebel, Joanna, Ellinger, Philipp, Pesch, Theresa, Soon, Chai Fen, Geyer, Marcel, Gluske, Katja, Stelte-Ludwig, Beatrix, Gorjánácz, Mátyás
Published in Clinical and experimental medicine (10.06.2024)
Published in Clinical and experimental medicine (10.06.2024)
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Journal Article
Predicting gene expression in T cell differentiation from histone modifications and transcription factor binding affinities by linear mixture models
Costa, Ivan G, Roider, Helge G, do Rego, Thais G, de Carvalho, Francisco de A T
Published in BMC bioinformatics (15.02.2011)
Published in BMC bioinformatics (15.02.2011)
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Journal Article
Hepatocyte Growth Factor Receptor overexpression predicts reduced survival but its targeting is not effective in unselected HNSCC patients
Khan, Martin, Khaznadar, Sami S., Routila, Johannes, Ventelä, Sami, Schmid, Elke, Gebhart, Bastian, Becker, Eva T., Roider, Helge G., Perala, Merja, Schmitz, Arndt A., Krahn, Thomas, Ahsen, Oliver
Published in Head & neck (01.04.2020)
Published in Head & neck (01.04.2020)
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Journal Article
Characterization of BAY 1905254, an Immune Checkpoint Inhibitor Targeting the Immunoglobulin-Like Domain Containing Receptor 2 (ILDR2)
Huetter, Julia, Gritzan, Uwe, Gutcher, Ilona, Doecke, Wolf-Dietrich, Luetke-Eversloh, Merlin V, Golfier, Sven, Roider, Helge G, Frisk, Anna-Lena, Hunter, John, Pow, Andrew, Drake, Andrew, Levine, Zurit, Levy, Ofer, Azulay, Meir, Barbiro, Inbal, Cojocaru, Gady, Vaknin, Ilan, Kreft, Bertolt, Roese, Lars
Published in Cancer immunology research (01.07.2020)
Published in Cancer immunology research (01.07.2020)
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Journal Article
TGF-β1 potentiates Vγ9Vδ2 T cell adoptive immunotherapy of cancer
Beatson, Richard E., Parente-Pereira, Ana C., Halim, Leena, Cozzetto, Domenico, Hull, Caroline, Whilding, Lynsey M., Martinez, Olivier, Taylor, Chelsea A., Obajdin, Jana, Luu Hoang, Kim Ngan, Draper, Benjamin, Iqbal, Ayesha, Hardiman, Tom, Zabinski, Tomasz, Man, Francis, de Rosales, Rafael T.M., Xie, Jinger, Aswad, Fred, Achkova, Daniela, Joseph, Chung-Yang Ricardo, Ciprut, Sara, Adami, Antonella, Roider, Helge G., Hess-Stumpp, Holger, Győrffy, Balázs, Quist, Jelmar, Grigoriadis, Anita, Sommer, Anette, Tutt, Andrew N.J., Davies, David M., Maher, John
Published in Cell reports. Medicine (21.12.2021)
Published in Cell reports. Medicine (21.12.2021)
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Journal Article
TransFind--predicting transcriptional regulators for gene sets
Kiełbasa, Szymon M, Klein, Holger, Roider, Helge G, Vingron, Martin, Blüthgen, Nils
Published in Nucleic acids research (01.07.2010)
Published in Nucleic acids research (01.07.2010)
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Journal Article
Publisher Correction: Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing
Guo, Xinyi, Zhang, Yuanyuan, Zheng, Liangtao, Zheng, Chunhong, Song, Jintao, Zhang, Qiming, Kang, Boxi, Liu, Zhouzerui, Jin, Liang, Xing, Rui, Gao, Ranran, Zhang, Lei, Dong, Minghui, Hu, Xueda, Ren, Xianwen, Kirchhoff, Dennis, Roider, Helge Gottfried, Yan, Tiansheng, Zhang, Zemin
Published in Nature medicine (01.10.2018)
Published in Nature medicine (01.10.2018)
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Journal Article
Targeting the aryl hydrocarbon receptor (AhR) with BAY 2416964: a selective small molecule inhibitor for cancer immunotherapy
Kober, Christina, Roewe, Julian, Schmees, Norbert, Roese, Lars, Roehn, Ulrike, Bader, Benjamin, Stoeckigt, Detlef, Prinz, Florian, Gorjánácz, Mátyás, Roider, Helge Gottfried, Olesch, Catherine, Leder, Gabriele, Irlbacher, Horst, Lesche, Ralf, Lefranc, Julien, Oezcan-Wahlbrink, Mine, Batra, Ankita Sati, Elmadany, Nirmeen, Carretero, Rafael, Sahm, Katharina, Oezen, Iris, Cichon, Frederik, Baumann, Daniel, Sadik, Ahmed, Opitz, Christiane A, Weinmann, Hilmar, Hartung, Ingo V, Kreft, Bertolt, Offringa, Rienk, Platten, Michael, Gutcher, Ilona
Published in Journal for immunotherapy of cancer (01.11.2023)
Published in Journal for immunotherapy of cancer (01.11.2023)
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