Time-series metagenomics reveals changing protistan ecology of a temperate dimictic lake
Krinos, Arianna I, Bowers, Robert M, Rohwer, Robin R, McMahon, Katherine D, Woyke, Tanja, Schulz, Frederik
Published in Microbiome (20.07.2024)
Published in Microbiome (20.07.2024)
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Journal Article
Freshwater carbon and nutrient cycles revealed through reconstructed population genomes
Linz, Alexandra M, He, Shaomei, Stevens, Sarah L R, Anantharaman, Karthik, Rohwer, Robin R, Malmstrom, Rex R, Bertilsson, Stefan, McMahon, Katherine D
Published in PeerJ (San Francisco, CA) (10.12.2018)
Published in PeerJ (San Francisco, CA) (10.12.2018)
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Journal Article
TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution
Rohwer, Robin R, Hamilton, Joshua J, Newton, Ryan J, McMahon, Katherine D
Published in mSphere (05.09.2018)
Published in mSphere (05.09.2018)
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Journal Article
Increased anoxia following species invasion of a eutrophic lake
Rohwer, Robin R., Ladwig, Robert, Hanson, Paul C., Walsh, Jake R., Vander Zanden, M. Jake, Dugan, Hilary A.
Published in Limnology and oceanography letters (01.02.2024)
Published in Limnology and oceanography letters (01.02.2024)
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Journal Article
Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota
Oliver, Tiffany, Varghese, Neha, Roux, Simon, Schulz, Frederik, Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Riley, Robert, LaButti, Kurt, Egan, Robert, Hajek, Patrick, Mukherjee, Supratim, Ovchinnikova, Galina, Reddy, T. B. K., Calhoun, Sara, Hayes, Richard D., Rohwer, Robin R., Zhou, Zhichao, Daum, Chris, Copeland, Alex, Chen, I-Min A., Ivanova, Natalia N., Kyrpides, Nikos C., Mouncey, Nigel J., del Rio, Tijana Glavina, Grigoriev, Igor V., Hofmeyr, Steven, Oliker, Leonid, Yelick, Katherine, Anantharaman, Karthik, McMahon, Katherine D., Woyke, Tanja, Eloe-Fadrosh, Emiley A.
Published in Scientific data (04.09.2024)
Published in Scientific data (04.09.2024)
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Journal Article
Ananke: temporal clustering reveals ecological dynamics of microbial communities
Hall, Michael W, Rohwer, Robin R, Perrie, Jonathan, McMahon, Katherine D, Beiko, Robert G
Published in PeerJ (San Francisco, CA) (26.09.2017)
Published in PeerJ (San Francisco, CA) (26.09.2017)
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Journal Article
Nine Lessons about Aquatic Invasive Species from the North Temperate Lakes Long-Term Ecological Research (NTL-LTER) Program
Vander Zanden, M Jake, Gorsky, Adrianna, Hansen, Gretchen J A, Johnson, Pieter T J, Latzka, Alexander W, Mikulyuk, Alison, Rohwer, Robin R, Spear, Michael J, Walsh, Jake R
Published in Bioscience (26.08.2024)
Published in Bioscience (26.08.2024)
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Journal Article
Ananke: Temporal clustering reveals ecological dynamics of microbial communities
Hall, Michael W, Rohwer, Robin R, Perrie, Jonathan, McMahon, Katherine D, Beiko, Robert G
Published in PeerJ preprints (17.03.2017)
Published in PeerJ preprints (17.03.2017)
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Journal Article
Bacterial ecology and evolution converge on seasonal and decadal scales
Rohwer, Robin R, Kirkpatrick, Mark, Garcia, Sarahi L, Kellom, Matthew, McMahon, Katherine D, Baker, Brett J
Published in bioRxiv (12.08.2024)
Published in bioRxiv (12.08.2024)
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Journal Article
Paper
A 20-year time-series of a freshwater lake reveals seasonal dynamics and environmental drivers of viral diversity, ecology, and evolution
Zhou, Zhichao, Tran, Patricia Q, Cody, Martin, Rohwer, Robin R, Baker, Brett, Mcmahon, Katherine, Anantharaman, Karthik
Published in bioRxiv (06.02.2024)
Published in bioRxiv (06.02.2024)
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Paper
Connections between freshwater carbon and nutrient cycles revealed through reconstructed population genomes
Linz, Alexandra, He, Shaomei, Stevens, Sarah LR, Anantharaman, Karthik, Rohwer, Robin R, Malmstrom, Rex, Bertilsson, Stefan, McMahon, Katherine D
Published in bioRxiv (09.07.2018)
Published in bioRxiv (09.07.2018)
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Paper