Determination of reaction coordinates via locally scaled diffusion map
Rohrdanz, Mary A, Zheng, Wenwei, Maggioni, Mauro, Clementi, Cecilia
Published in The Journal of chemical physics (28.03.2011)
Published in The Journal of chemical physics (28.03.2011)
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Journal Article
Rapid computation of intermolecular interactions in molecular and ionic clusters: self-consistent polarization plus symmetry-adapted perturbation theory
Herbert, John M, Jacobson, Leif D, Un Lao, Ka, Rohrdanz, Mary A
Published in Physical chemistry chemical physics : PCCP (07.06.2012)
Published in Physical chemistry chemical physics : PCCP (07.06.2012)
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Journal Article
A long-range-corrected density functional that performs well for both ground-state properties and time-dependent density functional theory excitation energies, including charge-transfer excited states
Rohrdanz, Mary A, Martins, Katie M, Herbert, John M
Published in The Journal of chemical physics (07.02.2009)
Published in The Journal of chemical physics (07.02.2009)
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Journal Article
Rapid Exploration of Configuration Space with Diffusion-Map-Directed Molecular Dynamics
Zheng, Wenwei, Rohrdanz, Mary A, Clementi, Cecilia
Published in The journal of physical chemistry. B (24.10.2013)
Published in The journal of physical chemistry. B (24.10.2013)
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Journal Article
TransVar: a multilevel variant annotator for precision genomics
Zhou, Wanding, Chen, Tenghui, Chong, Zechen, Rohrdanz, Mary A, Melott, James M, Wakefield, Chris, Zeng, Jia, Weinstein, John N, Meric-Bernstam, Funda, Mills, Gordon B, Chen, Ken
Published in Nature methods (01.11.2015)
Published in Nature methods (01.11.2015)
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Journal Article
Polymer reversal rate calculated via locally scaled diffusion map
Zheng, Wenwei, Rohrdanz, Mary A, Maggioni, Mauro, Clementi, Cecilia
Published in The Journal of chemical physics (14.04.2011)
Published in The Journal of chemical physics (14.04.2011)
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Journal Article
RPPA SPACE: an R package for normalization and quantitation of Reverse-Phase Protein Array data
Shehwana, Huma, Kumar, Shwetha V, Melott, James M, Rohrdanz, Mary A, Wakefield, Chris, Ju, Zhenlin, Siwak, Doris R, Lu, Yiling, Broom, Bradley M, Weinstein, John N, Mills, Gordon B, Akbani, Rehan
Published in Bioinformatics (Oxford, England) (15.11.2022)
Published in Bioinformatics (Oxford, England) (15.11.2022)
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Journal Article
Delineation of Folding Pathways of a β-Sheet Miniprotein
Zheng, Wenwei, Qi, Bo, Rohrdanz, Mary A, Caflisch, Amedeo, Dinner, Aaron R, Clementi, Cecilia
Published in The journal of physical chemistry. B (10.11.2011)
Published in The journal of physical chemistry. B (10.11.2011)
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Journal Article
Molecular recognition of DNA by ligands: roughness and complexity of the free energy profile
Zheng, Wenwei, Vargiu, Attilio Vittorio, Vargiu, Attlio Vittorio, Rohrdanz, Mary A, Carloni, Paolo, Clementi, Cecilia
Published in The Journal of chemical physics (14.10.2013)
Published in The Journal of chemical physics (14.10.2013)
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Journal Article
Controlled spontaneous emission
Lee, Jae-Seung, Rohrdanz, Mary A, Khitrin, A K
Published in Journal of physics. B, Atomic, molecular, and optical physics (28.02.2008)
Published in Journal of physics. B, Atomic, molecular, and optical physics (28.02.2008)
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Journal Article
TransVar: a trans-level variant annotator for precision genomics
Zhou, Wanding, Chen, Tenghui, Chong, Zechen, Rohrdanz, Mary A., Melott, James M., Wakefield, Chris, Zeng, Jia, Weinstein, John N., Meric-Bernstam, Funda, Mills, Gordon B., Chen, Ken
Published in Nature methods (01.11.2015)
Published in Nature methods (01.11.2015)
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Journal Article
OmicPioneer-sc: an integrated, interactive visualization environment for single-cell sequencing data
Weinstein, John N, Rohrdanz, Mary A, Stucky, Mark, Melott, James, Ma, Jun, Mohanty, Vakul, Manyam, Ganiraju, Wakefield, Christopher, Chen, Ken, Navin, Nicholas E, Ryan, Michael C, Akbani, Rehan, Broom, Bradley M
Published in bioRxiv (02.11.2020)
Published in bioRxiv (02.11.2020)
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