DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations
Rodrigues, Carlos H.M., Pires, Douglas E.V., Ascher, David B.
Published in Protein science (01.01.2021)
Published in Protein science (01.01.2021)
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Journal Article
Computational saturation mutagenesis to predict structural consequences of systematic mutations in the beta subunit of RNA polymerase in Mycobacterium leprae
Vedithi, Sundeep Chaitanya, Rodrigues, Carlos H.M., Portelli, Stephanie, Skwark, Marcin J., Das, Madhusmita, Ascher, David B., Blundell, Tom L., Malhotra, Sony
Published in Computational and structural biotechnology journal (01.01.2020)
Published in Computational and structural biotechnology journal (01.01.2020)
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Journal Article
Structure-guided machine learning prediction of drug resistance mutations in Abelson 1 kinase
Zhou, Yunzhuo, Portelli, Stephanie, Pat, Megan, Rodrigues, Carlos H.M., Nguyen, Thanh-Binh, Pires, Douglas E.V., Ascher, David B.
Published in Computational and structural biotechnology journal (01.01.2021)
Published in Computational and structural biotechnology journal (01.01.2021)
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Journal Article
HGDiscovery: An online tool providing functional and phenotypic information on novel variants of homogentisate 1,2- dioxigenase
Karmakar, Malancha, Cicaloni, Vittoria, Rodrigues, Carlos H.M., Spiga, Ottavia, Santucci, Annalisa, Ascher, David B.
Published in Current research in structural biology (01.01.2022)
Published in Current research in structural biology (01.01.2022)
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Journal Article
Exploring Protein Supersecondary Structure Through Changes in Protein Folding, Stability, and Flexibility
Pires, Douglas E V, Rodrigues, Carlos H M, Albanaz, Amanda T S, Karmakar, Malancha, Myung, Yoochan, Xavier, Joicymara, Michanetzi, Eleni-Maria, Portelli, Stephanie, Ascher, David B
Published in Methods in molecular biology (Clifton, N.J.) (2019)
Published in Methods in molecular biology (Clifton, N.J.) (2019)
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Journal Article
mCSM-PPI2: predicting the effects of mutations on protein-protein interactions
Rodrigues, Carlos H M, Myung, Yoochan, Pires, Douglas E V, Ascher, David B
Published in Nucleic acids research (02.07.2019)
Published in Nucleic acids research (02.07.2019)
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Journal Article
DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability
Rodrigues, Carlos HM, Pires, Douglas EV, Ascher, David B
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
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Journal Article
mCSM-membrane: predicting the effects of mutations on transmembrane proteins
Pires, Douglas E V, Rodrigues, Carlos H M, Ascher, David B
Published in Nucleic acids research (02.07.2020)
Published in Nucleic acids research (02.07.2020)
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Journal Article
DDMut: predicting effects of mutations on protein stability using deep learning
Zhou, Yunzhuo, Pan, Qisheng, Pires, Douglas E V, Rodrigues, Carlos H M, Ascher, David B
Published in Nucleic acids research (05.07.2023)
Published in Nucleic acids research (05.07.2023)
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Journal Article
mmCSM-PPI: predicting the effects of multiple point mutations on protein–protein interactions
Rodrigues, Carlos H M, Pires, Douglas E V, Ascher, David B
Published in Nucleic acids research (02.07.2021)
Published in Nucleic acids research (02.07.2021)
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Journal Article
Exploring the structural distribution of genetic variation in SARS-CoV-2 with the COVID-3D online resource
Portelli, Stephanie, Olshansky, Moshe, Rodrigues, Carlos H M, D'Souza, Elston N, Myung, Yoochan, Silk, Michael, Alavi, Azadeh, Pires, Douglas E V, Ascher, David B
Published in Nature genetics (01.10.2020)
Published in Nature genetics (01.10.2020)
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Journal Article
Structure guided prediction of Pyrazinamide resistance mutations in pncA
Karmakar, Malancha, Rodrigues, Carlos H M, Horan, Kristy, Denholm, Justin T, Ascher, David B
Published in Scientific reports (05.02.2020)
Published in Scientific reports (05.02.2020)
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Journal Article
DockNet: high-throughput protein–protein interface contact prediction
Williams, Nathan P, Rodrigues, Carlos H M, Truong, Jia, Ascher, David B, Holien, Jessica K
Published in Bioinformatics (Oxford, England) (01.01.2023)
Published in Bioinformatics (Oxford, England) (01.01.2023)
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Journal Article
Empirical ways to identify novel Bedaquiline resistance mutations in AtpE
Karmakar, Malancha, Rodrigues, Carlos H M, Holt, Kathryn E, Dunstan, Sarah J, Denholm, Justin, Ascher, David B
Published in PloS one (29.05.2019)
Published in PloS one (29.05.2019)
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Journal Article
mCSM-AB2: guiding rational antibody design using graph-based signatures
Myung, Yoochan, Rodrigues, Carlos H M, Ascher, David B, Pires, Douglas E V
Published in Bioinformatics (01.03.2020)
Published in Bioinformatics (01.03.2020)
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Journal Article
Structural landscapes of PPI interfaces
Rodrigues, Carlos H M, Pires, Douglas E V, Blundell, Tom L, Ascher, David B
Published in Briefings in bioinformatics (18.07.2022)
Published in Briefings in bioinformatics (18.07.2022)
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Journal Article