Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling
Rockett, Rebecca J., Arnott, Alicia, Lam, Connie, Sadsad, Rosemarie, Timms, Verlaine, Gray, Karen-Ann, Eden, John-Sebastian, Chang, Sheryl, Gall, Mailie, Draper, Jenny, Sim, Eby M., Bachmann, Nathan L., Carter, Ian, Basile, Kerri, Byun, Roy, O’Sullivan, Matthew V., Chen, Sharon C-A, Maddocks, Susan, Sorrell, Tania C., Dwyer, Dominic E., Holmes, Edward C., Kok, Jen, Prokopenko, Mikhail, Sintchenko, Vitali
Published in Nature medicine (01.09.2020)
Published in Nature medicine (01.09.2020)
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Co-infection with SARS-CoV-2 Omicron and Delta variants revealed by genomic surveillance
Rockett, Rebecca J., Draper, Jenny, Gall, Mailie, Sim, Eby M., Arnott, Alicia, Agius, Jessica E., Johnson-Mackinnon, Jessica, Fong, Winkie, Martinez, Elena, Drew, Alexander P., Lee, Clement, Ngo, Christine, Ramsperger, Marc, Ginn, Andrew N., Wang, Qinning, Fennell, Michael, Ko, Danny, Hueston, Linda, Kairaitis, Lukas, Holmes, Edward C., O’Sullivan, Matthew N., Chen, Sharon C.-A., Kok, Jen, Dwyer, Dominic E., Sintchenko, Vitali
Published in Nature communications (18.05.2022)
Published in Nature communications (18.05.2022)
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SABRes: in silico detection of drug resistance conferring mutations in subpopulations of SARS-CoV-2 genomes
Fong, Winkie, Rockett, Rebecca J, Agius, Jessica E, Chandra, Shona, Johnson-Mckinnon, Jessica, Sim, Eby, Lam, Connie, Arnott, Alicia, Gall, Mailie, Draper, Jenny, Maddocks, Susan, Chen, Sharon, Kok, Jen, Dwyer, Dominic, O'Sullivan, Matthew, Sintchenko, Vitali
Published in BMC infectious diseases (08.05.2023)
Published in BMC infectious diseases (08.05.2023)
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Journal Article
Emergence of Japanese encephalitis in Australia: a diagnostic perspective
Pham, David, Howard-Jones, Annaleise R, Hueston, Linda, Jeoffreys, Neisha, Doggett, Stephen, Rockett, Rebecca J, Eden, John-Sebastian, Sintchenko, Vitali, C-A Chen, Sharon, O'Sullivan, Matthew V, Maddocks, Susan, Dwyer, Dominic E, Kok, Jen
Published in Pathology (01.10.2022)
Published in Pathology (01.10.2022)
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Journal Article
Genome-wide networks reveal emergence of epidemic strains of Salmonella Enteritidis
Svahn, Adam J., Chang, Sheryl L., Rockett, Rebecca J., Cliff, Oliver M., Wang, Qinning, Arnott, Alicia, Ramsperger, Marc, Sorrell, Tania C., Sintchenko, Vitali, Prokopenko, Mikhail
Published in International journal of infectious diseases (01.04.2022)
Published in International journal of infectious diseases (01.04.2022)
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Exploring the prevalence of ten polyomaviruses and two herpes viruses in breast cancer
Antonsson, Annika, Bialasiewicz, Seweryn, Rockett, Rebecca J, Jacob, Kevin, Bennett, Ian C, Sloots, Theo P
Published in PloS one (15.08.2012)
Published in PloS one (15.08.2012)
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SARS-CoV-2 Within-Host and in vitro Genomic Variability and Sub-Genomic RNA Levels Indicate Differences in Viral Expression Between Clinical Cohorts and in vitro Culture
Agius, Jessica E, Johnson-Mackinnon, Jessica C, Fong, Winkie, Gall, Mailie, Lam, Connie, Basile, Kerri, Kok, Jen, Arnott, Alicia, Sintchenko, Vitali, Rockett, Rebecca J
Published in Frontiers in microbiology (19.05.2022)
Published in Frontiers in microbiology (19.05.2022)
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Detection of novel polyomaviruses, TSPyV, HPyV6, HPyV7, HPyV9 and MWPyV in feces, urine, blood, respiratory swabs and cerebrospinal fluid
Rockett, Rebecca J, Sloots, Theo P, Bowes, Sharleen, O'Neill, Nicholas, Ye, Suifang, Robson, Jenny, Whiley, David M, Lambert, Stephen B, Wang, David, Nissen, Michael D, Bialasiewicz, Seweryn
Published in PloS one (08.05.2013)
Published in PloS one (08.05.2013)
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Development and Validation of an In-House Real-Time Reverse-Transcriptase Polymerase Chain Reaction Assay for SARS-CoV-2 Omicron Lineage Subtyping between BA.1 and BA.2
Pham, David, Maddocks, Susan, Dwyer, Dominic E, Sintchenko, Vitali, Kok, Jen, Rockett, Rebecca J
Published in Viruses (01.08.2022)
Published in Viruses (01.08.2022)
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Journal Article
Documenting elimination of co-circulating COVID-19 clusters using genomics in New South Wales, Australia
Arnott, Alicia, Draper, Jenny, Rockett, Rebecca J, Lam, Connie, Sadsad, Rosemarie, Gall, Mailie, Martinez, Elena, Byun, Roy, Musto, Jennie, Marais, Ben, Chen, Sharon C.-A, Kok, Jen, Dwyer, Dominic E, Sintchenko, Vitali
Published in BMC research notes (17.11.2021)
Published in BMC research notes (17.11.2021)
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Journal Article
Improved Neutralisation of the SARS-CoV-2 Omicron Variant following a Booster Dose of Pfizer-BioNTech (BNT162b2) COVID-19 Vaccine
Basile, Kerri, Rockett, Rebecca J, McPhie, Kenneth, Fennell, Michael, Johnson-Mackinnon, Jessica, Agius, Jessica E, Fong, Winkie, Rahman, Hossinur, Ko, Danny, Donavan, Linda, Hueston, Linda, Lam, Connie, Arnott, Alicia, Chen, Sharon C.-A, Maddocks, Susan, O’Sullivan, Matthew V, Dwyer, Dominic E, Sintchenko, Vitali, Kok, Jen
Published in Viruses (01.09.2022)
Published in Viruses (01.09.2022)
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Assessment of Inter-Laboratory Differences in SARS-CoV-2 Consensus Genome Assemblies between Public Health Laboratories in Australia
Foster, Charles S P, Stelzer-Braid, Sacha, Deveson, Ira W, Bull, Rowena A, Yeang, Malinna, Au, Jane-Phan, Ruiz Silva, Mariana, van Hal, Sebastiaan J, Rockett, Rebecca J, Sintchenko, Vitali, Kim, Ki Wook, Rawlinson, William D
Published in Viruses (19.01.2022)
Published in Viruses (19.01.2022)
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Guiding the design of SARS-CoV-2 genomic surveillance by estimating the resolution of outbreak detection
Suster, Carl J E, Arnott, Alicia, Blackwell, Grace, Gall, Mailie, Draper, Jenny, Martinez, Elena, Drew, Alexander P, Rockett, Rebecca J, Chen, Sharon C-A, Kok, Jen, Dwyer, Dominic E, Sintchenko, Vitali
Published in Frontiers in public health (05.10.2022)
Published in Frontiers in public health (05.10.2022)
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A real-time, quantitative PCR method using hydrolysis probes for the monitoring of Plasmodium falciparum load in experimentally infected human volunteers
Rockett, Rebecca J, Tozer, Sarah J, Peatey, Chris, Bialasiewicz, Seweryn, Whiley, David M, Nissen, Michael D, Trenholme, Katharine, Mc Carthy, James S, Sloots, Theo P
Published in Malaria journal (28.02.2011)
Published in Malaria journal (28.02.2011)
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A laboratory framework for ongoing optimization of amplification-based genomic surveillance programs
Lam, Connie, Johnson-Mackinnon, Jessica, Basile, Kerri, Fong, Winkie, Suster, Carl J E, Gall, Mailie, Agius, Jessica, Chandra, Shona, Draper, Jenny, Martinez, Elena, Drew, Alexander, Wang, Qinning, Chen, Sharon C, Kok, Jen, Dwyer, Dominic E, Sintchenko, Vitali, Rockett, Rebecca J
Published in Microbiology spectrum (12.12.2023)
Published in Microbiology spectrum (12.12.2023)
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NR1I2 polymorphisms are related to tacrolimus dose-adjusted exposure and BK viremia in adult kidney transplantation
Barraclough, Katherine A, Isbel, Nicole M, Lee, Katie J, Bergmann, Troels K, Johnson, David W, McWhinney, Brett C, Ungerer, Jacobus P J, Campbell, Scott B, Leary, Diana R, Bialasiewicz, Seweryn, Rockett, Rebecca J, Staatz, Christine E
Published in Transplantation (27.11.2012)
Published in Transplantation (27.11.2012)
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Pangenome Analysis of a Salmonella Enteritidis Population Links a Major Outbreak to a Gifsy-1-Like Prophage Containing Anti-Inflammatory Gene gogB
Svahn, Adam J, Suster, Carl J E, Chang, Sheryl L, Rockett, Rebecca J, Sim, Eby M, Cliff, Oliver M, Wang, Qinning, Arnott, Alicia, Ramsperger, Marc, Sorrell, Tania C, Sintchenko, Vitali, Prokopenko, Mikhail
Published in Microbiology spectrum (14.03.2023)
Published in Microbiology spectrum (14.03.2023)
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Genomic Surveillance Enables Suitability Assessment of Salmonella Gene Targets Used for Culture-Independent Diagnostic Testing
Rockett, Rebecca J, Arnott, Alicia, Wang, Qinning, Howard, Peter, Sintchenko, Vitali
Published in Journal of clinical microbiology (24.08.2020)
Published in Journal of clinical microbiology (24.08.2020)
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