Diverse and abundant antibiotic resistance genes in Chinese swine farms
Zhu, Yong-Guan, Johnson, Timothy A., Su, Jian-Qiang, Qiao, Min, Guo, Guang-Xia, Stedtfeld, Robert D., Hashsham, Syed A., Tiedje, James M.
Published in Proceedings of the National Academy of Sciences - PNAS (26.02.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (26.02.2013)
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Journal Article
Sorption of sulfamethazine to biochars as affected by dissolved organic matters of different origin
Jia, Mingyun, Wang, Fang, Bian, Yongrong, Stedtfeld, Robert D., Liu, Guangxia, Yu, Jinping, Jiang, Xin
Published in Bioresource technology (01.01.2018)
Published in Bioresource technology (01.01.2018)
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Journal Article
High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant
Karkman, Antti, Johnson, Timothy A., Lyra, Christina, Stedtfeld, Robert D., Tamminen, Manu, Tiedje, James M., Virta, Marko
Published in FEMS microbiology ecology (01.03.2016)
Published in FEMS microbiology ecology (01.03.2016)
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Journal Article
Aquaculture changes the profile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments
Muziasari, Windi I., Pärnänen, Katariina, Johnson, Timothy A., Lyra, Christina, Karkman, Antti, Stedtfeld, Robert D., Tamminen, Manu, Tiedje, James M., Virta, Marko
Published in FEMS microbiology ecology (01.04.2016)
Published in FEMS microbiology ecology (01.04.2016)
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Journal Article
In-feed antibiotic effects on the swine intestinal microbiome
Looft, Torey, Johnson, Timothy A., Allen, Heather K., Bayles, Darrell O., Alt, David P., Stedtfeld, Robert D., Sul, Woo Jun, Stedtfeld, Tiffany M., Chai, Benli, Cole, James R., Hashsham, Syed A., Tiedje, James M., Stanton, Thad B.
Published in Proceedings of the National Academy of Sciences - PNAS (31.01.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (31.01.2012)
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Journal Article
Clusters of Antibiotic Resistance Genes Enriched Together Stay Together in Swine Agriculture
Johnson, Timothy A, Stedtfeld, Robert D, Wang, Qiong, Cole, James R, Hashsham, Syed A, Looft, Torey, Zhu, Yong-Guan, Tiedje, James M
Published in mBio (12.04.2016)
Published in mBio (12.04.2016)
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Journal Article
Pharmaceutical exposure changed antibiotic resistance genes and bacterial communities in soil-surface- and overhead-irrigated greenhouse lettuce
Shen, Yike, Stedtfeld, Robert D., Guo, Xueping, Bhalsod, Gemini D., Jeon, Sangho, Tiedje, James M., Li, Hui, Zhang, Wei
Published in Environment international (01.10.2019)
Published in Environment international (01.10.2019)
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Journal Article
The Resistome of Farmed Fish Feces Contributes to the Enrichment of Antibiotic Resistance Genes in Sediments below Baltic Sea Fish Farms
Muziasari, Windi I, Pitkänen, Leena K, Sørum, Henning, Stedtfeld, Robert D, Tiedje, James M, Virta, Marko
Published in Frontiers in microbiology (06.01.2017)
Published in Frontiers in microbiology (06.01.2017)
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Journal Article
Antibiotic resistance in European wastewater treatment plants mirrors the pattern of clinical antibiotic resistance prevalence
Pärnänen, Katariina M M, Narciso-da-Rocha, Carlos, Kneis, David, Berendonk, Thomas U, Cacace, Damiano, Do, Thi Thuy, Elpers, Christian, Fatta-Kassinos, Despo, Henriques, Isabel, Jaeger, Thomas, Karkman, Antti, Martinez, Jose Luis, Michael, Stella G, Michael-Kordatou, Irene, O'Sullivan, Kristin, Rodriguez-Mozaz, Sara, Schwartz, Thomas, Sheng, Hongjie, Sørum, Henning, Stedtfeld, Robert D, Tiedje, James M, Giustina, Saulo Varela Della, Walsh, Fiona, Vaz-Moreira, Ivone, Virta, Marko, Manaia, Célia M
Published in Science advances (01.03.2019)
Published in Science advances (01.03.2019)
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Journal Article
Primer set 2.0 for highly parallel qPCR array targeting antibiotic resistance genes and mobile genetic elements
Stedtfeld, Robert D, Guo, Xueping, Stedtfeld, Tiffany M, Sheng, Hongjie, Williams, Maggie R, Hauschild, Kristin, Gunturu, Santosh, Tift, Leo, Wang, Fang, Howe, Adina, Chai, Benli, Yin, Daqiang, Cole, James R, Tiedje, James M, Hashsham, Syed A
Published in FEMS microbiology ecology (01.09.2018)
Published in FEMS microbiology ecology (01.09.2018)
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Journal Article
MicroRNAs-Based Inter-Domain Communication between the Host and Members of the Gut Microbiome
Williams, Maggie R, Stedtfeld, Robert D, Tiedje, James M, Hashsham, Syed A
Published in Frontiers in microbiology (27.09.2017)
Published in Frontiers in microbiology (27.09.2017)
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Journal Article
Isothermal amplification of environmental DNA (eDNA) for direct field-based monitoring and laboratory confirmation of Dreissena sp
Williams, Maggie R, Stedtfeld, Robert D, Engle, Cathrine, Salach, Paul, Fakher, Umama, Stedtfeld, Tiffany, Dreelin, Erin, Stevenson, R Jan, Latimore, Jo, Hashsham, Syed A
Published in PloS one (16.10.2017)
Published in PloS one (16.10.2017)
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Journal Article
Antimicrobial resistance dashboard application for mapping environmental occurrence and resistant pathogens
Stedtfeld, Robert D., Williams, Maggie R., Fakher, Umama, Johnson, Timothy A., Stedtfeld, Tiffany M., Wang, Fang, Khalife, Walid T., Hughes, Mary, Etchebarne, Brett E., Tiedje, James M., Hashsham, Syed A.
Published in FEMS microbiology ecology (01.03.2016)
Published in FEMS microbiology ecology (01.03.2016)
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Journal Article
TCDD administered on activated carbon eliminates bioavailability and subsequent shifts to a key murine gut commensal
Stedtfeld, Robert D., Brett Sallach, J., Crawford, Robert B., Stedtfeld, Tiffany M., Williams, Maggie R., Waseem, Hassan, Johnston, Cliff T., Li, Hui, Teppen, Brian J., Kaminski, Norbert E., Boyd, Stephen A., Tiedje, James M., Hashsham, Syed A.
Published in Applied microbiology and biotechnology (01.10.2017)
Published in Applied microbiology and biotechnology (01.10.2017)
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Journal Article
Evaluation of Nucleic Acid Isothermal Amplification Methods for Human Clinical Microbial Infection Detection
Etchebarne, Brett E, Li, Zenggang, Stedtfeld, Robert D, Nicholas, Michael C, Williams, Maggie R, Johnson, Timothy A, Stedtfeld, Tiffany M, Kostic, Tanja, Khalife, Walid T, Tiedje, James M, Hashsham, Syed A, Hughes, Mary J
Published in Frontiers in microbiology (12.12.2017)
Published in Frontiers in microbiology (12.12.2017)
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Journal Article
Development and Experimental Validation of a Predictive Threshold Cycle Equation for Quantification of Virulence and Marker Genes by High-Throughput Nanoliter-Volume PCR on the OpenArray Platform
Stedtfeld, Robert D, Baushke, Samuel W, Tourlousse, Dieter M, Miller, Sarah M, Stedtfeld, Tiffany M, Gulari, Erdogan, Tiedje, James M, Hashsham, Syed A
Published in Applied and Environmental Microbiology (01.06.2008)
Published in Applied and Environmental Microbiology (01.06.2008)
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Journal Article
Modulatory Influence of Segmented Filamentous Bacteria on Transcriptomic Response of Gnotobiotic Mice Exposed to TCDD
Stedtfeld, Robert D, Chai, Benli, Crawford, Robert B, Stedtfeld, Tiffany M, Williams, Maggie R, Xiangwen, Shao, Kuwahara, Tomomi, Cole, James R, Kaminski, Norbert E, Tiedje, James M, Hashsham, Syed A
Published in Frontiers in microbiology (07.09.2017)
Published in Frontiers in microbiology (07.09.2017)
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Journal Article
Antibiotic resistance genes and bacterial communities in cornfield and pasture soils receiving swine and dairy manures
Chen, Zeyou, Zhang, Wei, Yang, Luxi, Stedtfeld, Robert D., Peng, Anping, Gu, Cheng, Boyd, Stephen A., Li, Hui
Published in Environmental pollution (1987) (01.05.2019)
Published in Environmental pollution (1987) (01.05.2019)
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Journal Article
Corrigendum: The Resistome of Farmed Fish Feces Contributes to the Enrichment of Antibiotic Resistance Genes in Sediments below Baltic Sea Fish Farms
Muziasari, Windi I, Pitkänen, Leena K, Sørum, Henning, Stedtfeld, Robert D, Tiedje, James M, Virta, Marko
Published in Frontiers in microbiology (2017)
Published in Frontiers in microbiology (2017)
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Journal Article
In Situ-Synthesized Virulence and Marker Gene Biochip for Detection of Bacterial Pathogens in Water
Miller, Sarah M, Tourlousse, Dieter M, Stedtfeld, Robert D, Baushke, Samuel W, Herzog, Amanda B, Wick, Lukas M, Rouillard, Jean Marie, Gulari, Erdogan, Tiedje, James M, Hashsham, Syed A
Published in Applied and Environmental Microbiology (01.04.2008)
Published in Applied and Environmental Microbiology (01.04.2008)
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Journal Article