Tracking the genome-wide outcomes of a transposable element burst over decades of amplification
Lu, Lu, Chen, Jinfeng, Robb, Sofia M. C., Okumoto, Yutaka, Stajich, Jason E., Wessler, Susan R.
Published in Proceedings of the National Academy of Sciences - PNAS (05.12.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (05.12.2017)
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Topological structures and syntenic conservation in sea anemone genomes
Zimmermann, Bob, Montenegro, Juan D, Robb, Sofia M C, Fropf, Whitney J, Weilguny, Lukas, He, Shuonan, Chen, Shiyuan, Lovegrove-Walsh, Jessica, Hill, Eric M, Chen, Cheng-Yi, Ragkousi, Katerina, Praher, Daniela, Fredman, David, Schultz, Darrin, Moran, Yehu, Simakov, Oleg, Genikhovich, Grigory, Gibson, Matthew C, Technau, Ulrich
Published in Nature communications (13.12.2023)
Published in Nature communications (13.12.2023)
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Role of Akt2 in regulation of metastasis suppressor 1 expression and colorectal cancer metastasis
Agarwal, E, Robb, C M, Smith, L M, Brattain, M G, Wang, J, Black, J D, Chowdhury, S
Published in Oncogene (01.06.2017)
Published in Oncogene (01.06.2017)
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MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes
Cantarel, Brandi L, Korf, Ian, Robb, Sofia M C, Parra, Genis, Ross, Eric, Moore, Barry, Holt, Carson, Sánchez Alvarado, Alejandro, Yandell, Mark
Published in Genome Research (01.01.2008)
Published in Genome Research (01.01.2008)
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SmedGD 2.0: The Schmidtea mediterranea genome database
Robb, Sofia M.C., Gotting, Kirsten, Ross, Eric, Sánchez Alvarado, Alejandro
Published in Genesis (New York, N.Y. : 2000) (01.08.2015)
Published in Genesis (New York, N.Y. : 2000) (01.08.2015)
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SmedGD: the Schmidtea mediterranea genome database
Robb, Sofia M.C, Ross, Eric, Alvarado, Alejandro Sánchez
Published in Nucleic acids research (01.01.2008)
Published in Nucleic acids research (01.01.2008)
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The use of RelocaTE and unassembled short reads to produce high-resolution snapshots of transposable element generated diversity in rice
Robb, Sofia M C, Lu, Lu, Valencia, Elizabeth, Burnette, 3rd, James M, Okumoto, Yutaka, Wessler, Susan R, Stajich, Jason E
Published in G3 : genes - genomes - genetics (01.06.2013)
Published in G3 : genes - genomes - genetics (01.06.2013)
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The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution
Smith, Jeramiah J, Timoshevskaya, Nataliya, Ye, Chengxi, Holt, Carson, Keinath, Melissa C, Parker, Hugo J, Cook, Malcolm E, Hess, Jon E, Narum, Shawn R, Lamanna, Francesco, Kaessmann, Henrik, Timoshevskiy, Vladimir A, Waterbury, Courtney K M, Saraceno, Cody, Wiedemann, Leanne M, Robb, Sofia M C, Baker, Carl, Eichler, Evan E, Hockman, Dorit, Sauka-Spengler, Tatjana, Yandell, Mark, Krumlauf, Robb, Elgar, Greg, Amemiya, Chris T
Published in Nature genetics (01.02.2018)
Published in Nature genetics (01.02.2018)
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Embryonic origin of adult stem cells required for tissue homeostasis and regeneration
Davies, Erin L, Lei, Kai, Seidel, Christopher W, Kroesen, Amanda E, McKinney, Sean A, Guo, Longhua, Robb, Sofia Mc, Ross, Eric J, Gotting, Kirsten, Alvarado, Alejandro Sánchez
Published in eLife (10.01.2017)
Published in eLife (10.01.2017)
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Journal Article
Genomic diversity generated by a transposable element burst in a rice recombinant inbred population
Chen, Jinfeng, Lu, Lu, Robb, Sofia M. C., Collin, Matthew, Okumoto, Yutaka, Stajich, Jason E., Wessler, Susan R.
Published in Proceedings of the National Academy of Sciences - PNAS (20.10.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (20.10.2020)
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Journal Article
Cellular, ultrastructural and molecular analyses of epidermal cell development in the planarian Schmidtea mediterranea
Cheng, Li-Chun, Tu, Kimberly C., Seidel, Chris W., Robb, Sofia M.C., Guo, Fengli, Sánchez Alvarado, Alejandro
Published in Developmental biology (15.01.2018)
Published in Developmental biology (15.01.2018)
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Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms
Nowotarski, Stephanie H., Davies, Erin L., Robb, Sofia M. C., Ross, Eric J., Matentzoglu, Nicolas, Doddihal, Viraj, Mir, Mol, McClain, Melainia, Sánchez Alvarado, Alejandro
Published in Development (Cambridge) (01.08.2021)
Published in Development (Cambridge) (01.08.2021)
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An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes
Timoshevskaya, Nataliya, Eşkut, Kaan İ., Timoshevskiy, Vladimir A., Robb, Sofia M.C., Holt, Carson, Hess, Jon E., Parker, Hugo J., Baker, Cindy F., Miller, Allison K., Saraceno, Cody, Yandell, Mark, Krumlauf, Robb, Narum, Shawn R., Lampman, Ralph T., Gemmell, Neil J., Mountcastle, Jacquelyn, Haase, Bettina, Balacco, Jennifer R., Formenti, Giulio, Pelan, Sarah, Sims, Ying, Howe, Kerstin, Fedrigo, Olivier, Jarvis, Erich D., Smith, Jeramiah J.
Published in Cell reports (Cambridge) (28.03.2023)
Published in Cell reports (Cambridge) (28.03.2023)
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Journal Article
Histone Modifications and Regeneration in the Planarian Schmidtea mediterranea
Robb, Sofia M.C., Alvarado, Alejandro Sánchez
Published in Current Topics in Developmental Biology (2014)
Published in Current Topics in Developmental Biology (2014)
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Publisher Correction: The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution
Smith, Jeramiah J, Timoshevskaya, Nataliya, Ye, Chengxi, Holt, Carson, Keinath, Melissa C, Parker, Hugo J, Cook, Malcolm E, Hess, Jon E, Narum, Shawn R, Lamanna, Francesco, Kaessmann, Henrik, Timoshevskiy, Vladimir A, Waterbury, Courtney K M, Saraceno, Cody, Wiedemann, Leanne M, Robb, Sofia M C, Baker, Carl, Eichler, Evan E, Hockman, Dorit, Sauka-Spengler, Tatjana, Yandell, Mark, Krumlauf, Robb, Elgar, Greg, Amemiya, Chris T
Published in Nature genetics (01.11.2018)
Published in Nature genetics (01.11.2018)
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Journal Article
Publisher Correction: The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution
Smith, Jeramiah J, Timoshevskaya, Nataliya, Ye, Chengxi, Holt, Carson, Keinath, Melissa C, Parker, Hugo J, Cook, Malcolm E, Hess, Jon E, Narum, Shawn R, Lamanna, Francesco, Kaessmann, Henrik, Timoshevskiy, Vladimir A, Waterbury, Courtney K M, Saraceno, Cody, Wiedemann, Leanne M, Robb, Sofia M C, Baker, Carl, Eichler, Evan E, Hockman, Dorit, Sauka-Spengler, Tatjana, Yandell, Mark, Krumlauf, Robb, Elgar, Greg, Amemiya, Chris T
Published in Nature genetics (01.05.2018)
Published in Nature genetics (01.05.2018)
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Journal Article
Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies
Matentzoglu, Nicolas, Goutte-Gattat, Damien, Shawn Zheng Kai Tan, Balhoff, James P, Carbon, Seth, Caron, Anita R, Duncan, William D, Flack, Joe E, Haendel, Melissa, Harris, Nomi L, Hogan, William R, Charles Tapley Hoyt, Jackson, Rebecca C, Kim, HyeongSik, Kir, Huseyin, Larralde, Martin, McMurry, Julie A, Overton, James A, Peters, Bjoern, Pilgrim, Clare, Stefancsik, Ray, Sofia MC Robb, Toro, Sabrina, Vasilevsky, Nicole A, Walls, Ramona, Mungall, Christopher J, Osumi-Sutherland, David
Published in arXiv.org (05.07.2022)
Published in arXiv.org (05.07.2022)
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