Flexible protein docking refinement using pose-dependent normal mode analysis
Venkatraman, Vishwesh, Ritchie, David W.
Published in Proteins, structure, function, and bioinformatics (01.08.2012)
Published in Proteins, structure, function, and bioinformatics (01.08.2012)
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Protein–protein docking by fast generalized Fourier transforms on 5D rotational manifolds
Padhorny, Dzmitry, Kazennov, Andrey, Zerbe, Brandon S., Porter, Kathryn A., Xia, Bing, Mottarella, Scott E., Kholodov, Yaroslav, Ritchie, David W., Vajda, Sandor, Kozakov, Dima
Published in Proceedings of the National Academy of Sciences - PNAS (26.07.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (26.07.2016)
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Computational discovery of direct associations between GO terms and protein domains
Alborzi, Seyed Ziaeddin, Ritchie, David W, Devignes, Marie-Dominique
Published in BMC bioinformatics (20.11.2018)
Published in BMC bioinformatics (20.11.2018)
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KBDOCK 2013: a spatial classification of 3D protein domain family interactions
Ghoorah, Anisah W, Devignes, Marie-Dominique, Smaïl-Tabbone, Malika, Ritchie, David W
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Spatial clustering of protein binding sites for template based protein docking
Ghoorah, Anisah W., Devignes, Marie-Dominique, Smaïl-Tabbone, Malika, Ritchie, David W.
Published in Bioinformatics (15.10.2011)
Published in Bioinformatics (15.10.2011)
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Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP‐11 structural models
El Houasli, Marwa, Maigret, Bernard, Devignes, Marie‐Dominique, Ghoorah, Anisah W., Grudinin, Sergei, Ritchie, David W.
Published in Proteins, structure, function, and bioinformatics (01.03.2017)
Published in Proteins, structure, function, and bioinformatics (01.03.2017)
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Characterization of a relaxase belonging to the MOBT family, a widespread family in Firmicutes mediating the transfer of ICEs
Soler, Nicolas, Robert, Emilie, Chauvot de Beauchêne, Isaure, Monteiro, Philippe, Libante, Virginie, Maigret, Bernard, Staub, Johan, Ritchie, David W, Guédon, Gérard, Payot, Sophie, Devignes, Marie-Dominique, Leblond-Bourget, Nathalie
Published in Mobile DNA (03.05.2019)
Published in Mobile DNA (03.05.2019)
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Comparison of Ligand-Based and Receptor-Based Virtual Screening of HIV Entry Inhibitors for the CXCR4 and CCR5 Receptors Using 3D Ligand Shape Matching and Ligand−Receptor Docking
Pérez-Nueno, Violeta I, Ritchie, David W, Rabal, Obdulia, Pascual, Rosalia, Borrell, Jose I, Teixidó, Jordi
Published in Journal of chemical information and modeling (01.03.2008)
Published in Journal of chemical information and modeling (01.03.2008)
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Recent trends and applications in 3D virtual screening
Ghemtio, Leo, Perez-Nueno, Violeta I, Leroux, Vincent, Asses, Yasmine, Souchet, Michel, Mavridis, Lazaros, Maigret, Bernard, Ritchie, David W
Published in Combinatorial chemistry & high throughput screening (01.11.2012)
Published in Combinatorial chemistry & high throughput screening (01.11.2012)
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Journal Article
HexServer: an FFT-based protein docking server powered by graphics processors
Macindoe, Gary, Mavridis, Lazaros, Venkatraman, Vishwesh, Devignes, Marie-Dominique, Ritchie, David W
Published in Nucleic acids research (01.07.2010)
Published in Nucleic acids research (01.07.2010)
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Journal Article
Docking essential dynamics eigenstructures
Mustard, Diana, Ritchie, David W.
Published in Proteins, structure, function, and bioinformatics (01.08.2005)
Published in Proteins, structure, function, and bioinformatics (01.08.2005)
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Journal Article
Protein docking using case-based reasoning
Ghoorah, Anisah W., Devignes, Marie-Dominique, Smaïl-Tabbone, Malika, Ritchie, David W.
Published in Proteins, structure, function, and bioinformatics (01.12.2013)
Published in Proteins, structure, function, and bioinformatics (01.12.2013)
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