Variable chromatin structure revealed by in situ spatially correlated DNA cleavage mapping
Risca, Viviana I., Denny, Sarah K., Straight, Aaron F., Greenleaf, William J.
Published in Nature (London) (12.01.2017)
Published in Nature (London) (12.01.2017)
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Journal Article
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
Corces, M Ryan, Trevino, Alexandro E, Hamilton, Emily G, Greenside, Peyton G, Sinnott-Armstrong, Nicholas A, Vesuna, Sam, Satpathy, Ansuman T, Rubin, Adam J, Montine, Kathleen S, Wu, Beijing, Kathiria, Arwa, Cho, Seung Woo, Mumbach, Maxwell R, Carter, Ava C, Kasowski, Maya, Orloff, Lisa A, Risca, Viviana I, Kundaje, Anshul, Khavari, Paul A, Montine, Thomas J, Greenleaf, William J, Chang, Howard Y
Published in Nature methods (01.10.2017)
Published in Nature methods (01.10.2017)
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Chromatin-associated RNA sequencing (ChAR-seq) maps genome-wide RNA-to-DNA contacts
Bell, Jason C, Jukam, David, Teran, Nicole A, Risca, Viviana I, Smith, Owen K, Johnson, Whitney L, Skotheim, Jan M, Greenleaf, William James, Straight, Aaron F
Published in eLife (12.04.2018)
Published in eLife (12.04.2018)
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Journal Article
Actin filament curvature biases branching direction
Risca, Viviana I, Wang, Evan B, Chaudhuri, Ovijit, Chia, Jia Jun, Geissler, Phillip L, Fletcher, Daniel A
Published in Proceedings of the National Academy of Sciences - PNAS (21.02.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (21.02.2012)
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Journal Article
The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation
Kim, Daniel S., Risca, Viviana I., Reynolds, David L., Chappell, James, Rubin, Adam J., Jung, Namyoung, Donohue, Laura K. H., Lopez-Pajares, Vanessa, Kathiria, Arwa, Shi, Minyi, Zhao, Zhixin, Deep, Harsh, Sharmin, Mahfuza, Rao, Deepti, Lin, Shin, Chang, Howard Y., Snyder, Michael P., Greenleaf, William J., Kundaje, Anshul, Khavari, Paul A.
Published in Nature genetics (01.11.2021)
Published in Nature genetics (01.11.2021)
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Journal Article
Simulation of Radiation-Induced DNA Damage and Protection by Histones Using the Code RITRACKS
Plante, Ianik, West, Devany W, Weeks, Jason, Risca, Viviana I
Published in Biotech (Basel) (05.06.2024)
Published in Biotech (Basel) (05.06.2024)
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Journal Article
BLIMP1 Induces Transient Metastatic Heterogeneity in Pancreatic Cancer
Chiou, Shin-Heng, Risca, Viviana I, Wang, Gordon X, Yang, Dian, Grüner, Barbara M, Kathiria, Arwa S, Ma, Rosanna K, Vaka, Dedeepya, Chu, Pauline, Kozak, Margaret, Castellini, Laura, Graves, Edward E, Kim, Grace E, Mourrain, Philippe, Koong, Albert C, Giaccia, Amato J, Winslow, Monte M
Published in Cancer discovery (01.10.2017)
Published in Cancer discovery (01.10.2017)
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Journal Article
Bacterial Tubulins A and B Exhibit Polarized Growth, Mixed-Polarity Bundling, and Destabilization by GTP Hydrolysis
Díaz-Celis, César, Risca, Viviana I, Hurtado, Felipe, Polka, Jessica K, Hansen, Scott D, Maturana, Daniel, Lagos, Rosalba, Mullins, R Dyche, Monasterio, Octavio
Published in Journal of bacteriology (01.10.2017)
Published in Journal of bacteriology (01.10.2017)
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Journal Article
Chromatin-Associated RNA Sequencing (ChAR-seq)
Jukam, David, Limouse, Charles, Smith, Owen K, Risca, Viviana I, Bell, Jason C, Straight, Aaron F
Published in Current protocols in molecular biology (Print) (01.04.2019)
Published in Current protocols in molecular biology (Print) (01.04.2019)
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In silico reconstitution of actin-based symmetry breaking and motility
Dayel, Mark J, Akin, Orkun, Landeryou, Mark, Risca, Viviana, Mogilner, Alex, Mullins, R Dyche
Published in PLoS biology (22.09.2009)
Published in PLoS biology (22.09.2009)
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Journal Article
A Conditional System to Specifically Link Disruption of Protein-Coding Function with Reporter Expression in Mice
Chiou, Shin-Heng, Kim-Kiselak, Caroline, Risca, Viviana I., Heimann, Megan K., Chuang, Chen-Hua, Burds, Aurora A., Greenleaf, William J., Jacks, Tyler E., Feldser, David M., Winslow, Monte M.
Published in Cell reports (Cambridge) (26.06.2014)
Published in Cell reports (Cambridge) (26.06.2014)
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Journal Article
A nucleosome switch primes Hepatitis B Virus infection
Prescott, Nicholas A, Mansisidor, Andrés, Bram, Yaron, Biaco, Tracy, Rendleman, Justin, Faulkner, Sarah C, Lemmon, Abigail A, Lim, Christine, Hamard, Pierre-Jacques, Koche, Richard P, Risca, Viviana I, Schwartz, Robert E, David, Yael
Published in bioRxiv (12.06.2024)
Published in bioRxiv (12.06.2024)
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Paper
Abstract 1441: Viral chromatin integrity enables transcription of the Hepatitis B Virus oncogene HBx
Prescott, Nicholas, Mansisidor, Andres, Bram, Yaron, Lemmon, Abigail, Risca, Viviana, Schwartz, Robert, David, Yeal
Published in The Journal of biological chemistry (2023)
Published in The Journal of biological chemistry (2023)
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