Mutational and putative neoantigen load predict clinical benefit of adoptive T cell therapy in melanoma
Lauss, Martin, Donia, Marco, Harbst, Katja, Andersen, Rikke, Mitra, Shamik, Rosengren, Frida, Salim, Maryem, Vallon-Christersson, Johan, Törngren, Therese, Kvist, Anders, Ringnér, Markus, Svane, Inge Marie, Jönsson, Göran
Published in Nature communications (23.11.2017)
Published in Nature communications (23.11.2017)
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Spatially and functionally distinct subclasses of breast cancer-associated fibroblasts revealed by single cell RNA sequencing
Bartoschek, Michael, Oskolkov, Nikolay, Bocci, Matteo, Lövrot, John, Larsson, Christer, Sommarin, Mikael, Madsen, Chris D., Lindgren, David, Pekar, Gyula, Karlsson, Göran, Ringnér, Markus, Bergh, Jonas, Björklund, Åsa, Pietras, Kristian
Published in Nature communications (04.12.2018)
Published in Nature communications (04.12.2018)
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Journal Article
Tissue-specific transcriptional imprinting and heterogeneity in human innate lymphoid cells revealed by full-length single-cell RNA-sequencing
Mazzurana, Luca, Czarnewski, Paulo, Jonsson, Viktor, Wigge, Leif, Ringnér, Markus, Williams, Teresa C., Ravindran, Avinash, Björklund, Åsa K., Säfholm, Jesper, Nilsson, Gunnar, Dahlén, Sven-Erik, Orre, Ann-Charlotte, Al-Ameri, Mamdoh, Höög, Charlotte, Hedin, Charlotte, Szczegielniak, Sylwester, Almer, Sven, Mjösberg, Jenny
Published in Cell research (01.05.2021)
Published in Cell research (01.05.2021)
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Journal Article
GOBO: gene expression-based outcome for breast cancer online
Ringnér, Markus, Fredlund, Erik, Häkkinen, Jari, Borg, Åke, Staaf, Johan
Published in PloS one (21.03.2011)
Published in PloS one (21.03.2011)
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Journal Article
A Molecular Taxonomy for Urothelial Carcinoma
SJÖDAHL, Gottfrid, LAUSS, Martin, MANSSON, Wiking, LIEDBERG, Fredrik, LINDGREN, David, HÖGLUND, Mattias, LÖVGREN, Kristina, CHEBIL, Gunilla, GUDJONSSON, Sigurdur, VEERLA, Srinivas, PATSCHAN, Oliver, AINE, Mattias, FERNÖ, Marten, RINGNER, Markus
Published in Clinical cancer research (15.06.2012)
Published in Clinical cancer research (15.06.2012)
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Journal Article
Exosomes reflect the hypoxic status of glioma cells and mediate hypoxia-dependent activation of vascular cells during tumor development
Kucharzewska, Paulina, Christianson, Helena C., Welch, Johanna E., Svensson, Katrin J., Fredlund, Erik, Ringnér, Markus, Mörgelin, Matthias, Bourseau-Guilmain, Erika, Bengzon, Johan, Belting, Mattias
Published in Proceedings of the National Academy of Sciences - PNAS (30.04.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (30.04.2013)
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Journal Article
Landscape of somatic mutations in 560 breast cancer whole-genome sequences
Nik-Zainal, Serena, Davies, Helen, Staaf, Johan, Ramakrishna, Manasa, Glodzik, Dominik, Zou, Xueqing, Martincorena, Inigo, Alexandrov, Ludmil B., Martin, Sancha, Wedge, David C., Van Loo, Peter, Ju, Young Seok, Smid, Marcel, Brinkman, Arie B., Morganella, Sandro, Aure, Miriam R., Lingjærde, Ole Christian, Langerød, Anita, Ringnér, Markus, Ahn, Sung-Min, Boyault, Sandrine, Brock, Jane E., Broeks, Annegien, Butler, Adam, Desmedt, Christine, Dirix, Luc, Dronov, Serge, Fatima, Aquila, Foekens, John A., Gerstung, Moritz, Hooijer, Gerrit K. J., Jang, Se Jin, Jones, David R., Kim, Hyung-Yong, King, Tari A., Krishnamurthy, Savitri, Lee, Hee Jin, Lee, Jeong-Yeon, Li, Yilong, McLaren, Stuart, Menzies, Andrew, Mustonen, Ville, O’Meara, Sarah, Pauporté, Iris, Pivot, Xavier, Purdie, Colin A., Raine, Keiran, Ramakrishnan, Kamna, Rodríguez-González, F. Germán, Romieu, Gilles, Sieuwerts, Anieta M., Simpson, Peter T., Shepherd, Rebecca, Stebbings, Lucy, Stefansson, Olafur A., Teague, Jon, Tommasi, Stefania, Treilleux, Isabelle, Van den Eynden, Gert G., Vermeulen, Peter, Vincent-Salomon, Anne, Yates, Lucy, Caldas, Carlos, Veer, Laura van’t, Tutt, Andrew, Knappskog, Stian, Tan, Benita Kiat Tee, Jonkers, Jos, Borg, Åke, Ueno, Naoto T., Sotiriou, Christos, Viari, Alain, Futreal, P. Andrew, Campbell, Peter J., Span, Paul N., Van Laere, Steven, Lakhani, Sunil R., Eyfjord, Jorunn E., Thompson, Alastair M., Birney, Ewan, Stunnenberg, Hendrik G., van de Vijver, Marc J., Martens, John W. M., Børresen-Dale, Anne-Lise, Richardson, Andrea L., Kong, Gu, Thomas, Gilles, Stratton, Michael R.
Published in Nature (London) (02.06.2016)
Published in Nature (London) (02.06.2016)
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Analysis of DNA methylation patterns in the tumor immune microenvironment of metastatic melanoma
Mitra, Shamik, Lauss, Martin, Cabrita, Rita, Choi, Jiyeon, Zhang, Tongwu, Isaksson, Karolin, Olsson, Håkan, Ingvar, Christian, Carneiro, Ana, Staaf, Johan, Ringnér, Markus, Nielsen, Kari, Brown, Kevin M., Jönsson, Göran
Published in Molecular oncology (01.05.2020)
Published in Molecular oncology (01.05.2020)
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Journal Article
A comprehensive map coupling histone modifications with gene regulation in adult dopaminergic and serotonergic neurons
Södersten, Erik, Toskas, Konstantinos, Rraklli, Vilma, Tiklova, Katarina, Björklund, Åsa K., Ringnér, Markus, Perlmann, Thomas, Holmberg, Johan
Published in Nature communications (26.03.2018)
Published in Nature communications (26.03.2018)
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Journal Article
Poor prognosis in carcinoma is associated with a gene expression signature of aberrant PTEN tumor suppressor pathway activity
Saal, Lao H, Johansson, Peter, Holm, Karolina, Gruvberger-Saal, Sofia K, She, Qing-Bai, Maurer, Matthew, Koujak, Susan, Ferrando, Adolfo A, Malmström, Per, Memeo, Lorenzo, Isola, Jorma, Bendahl, Pär-Ola, Rosen, Neal, Hibshoosh, Hanina, Ringnér, Markus, Borg, Åke, Parsons, Ramon
Published in Proceedings of the National Academy of Sciences - PNAS (01.05.2007)
Published in Proceedings of the National Academy of Sciences - PNAS (01.05.2007)
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Journal Article
An integrated genomics analysis of epigenetic subtypes in human breast tumors links DNA methylation patterns to chromatin states in normal mammary cells
Holm, Karolina, Staaf, Johan, Lauss, Martin, Aine, Mattias, Lindgren, David, Bendahl, Pär-Ola, Vallon-Christersson, Johan, Barkardottir, Rosa Bjork, Höglund, Mattias, Borg, Åke, Jönsson, Göran, Ringnér, Markus
Published in Breast cancer research : BCR (29.02.2016)
Published in Breast cancer research : BCR (29.02.2016)
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Journal Article
Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios
Staaf, Johan, Vallon-Christersson, Johan, Lindgren, David, Juliusson, Gunnar, Rosenquist, Richard, Höglund, Mattias, Borg, Ake, Ringnér, Markus
Published in BMC bioinformatics (02.10.2008)
Published in BMC bioinformatics (02.10.2008)
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Journal Article
Gene expression profiling-based identification of molecular subtypes in stage IV melanomas with different clinical outcome
Jönsson, Göran, Busch, Christian, Knappskog, Stian, Geisler, Jürgen, Miletic, Hrvoje, Ringnér, Markus, Lillehaug, Johan R, Borg, Ake, Lønning, Per Eystein
Published in Clinical cancer research (01.07.2010)
Published in Clinical cancer research (01.07.2010)
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Journal Article
Mutational patterns and clonal evolution from diagnosis to relapse in pediatric acute lymphoblastic leukemia
Sayyab, Shumaila, Lundmark, Anders, Larsson, Malin, Ringnér, Markus, Nystedt, Sara, Marincevic-Zuniga, Yanara, Tamm, Katja Pokrovskaja, Abrahamsson, Jonas, Fogelstrand, Linda, Heyman, Mats, Norén-Nyström, Ulrika, Lönnerholm, Gudmar, Harila-Saari, Arja, Berglund, Eva C., Nordlund, Jessica, Syvänen, Ann-Christine
Published in Scientific reports (2021)
Published in Scientific reports (2021)
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