Ineffectual Type 2–to–Type 1 Alveolar Epithelial Cell Differentiation in Idiopathic Pulmonary Fibrosis: Persistence of the KRT8hi Transitional State
Jiang, Peng, de Rubio, Rafael Gil, Hrycaj, Steven M, Gurczynski, Stephen J, Riemondy, Kent A, Moore, Bethany B, Omary, M Bishr, Ridge, Karen M, Zemans, Rachel L
Published in American journal of respiratory and critical care medicine (01.06.2020)
Published in American journal of respiratory and critical care medicine (01.06.2020)
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Cell-level metadata are indispensable for documenting single-cell sequencing datasets
Puntambekar, Sidhant, Hesselberth, Jay R, Riemondy, Kent A, Fu, Rui
Published in PLoS biology (04.05.2021)
Published in PLoS biology (04.05.2021)
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Single-Cell RNA Sequencing of Childhood Ependymoma Reveals Neoplastic Cell Subpopulations That Impact Molecular Classification and Etiology
Gillen, Austin E., Riemondy, Kent A., Amani, Vladimir, Griesinger, Andrea M., Gilani, Ahmed, Venkataraman, Sujatha, Madhavan, Krishna, Prince, Eric, Sanford, Bridget, Hankinson, Todd C., Handler, Michael H., Vibhakar, Rajeev, Jones, Ken L., Mitra, Siddhartha, Hesselberth, Jay R., Foreman, Nicholas K., Donson, Andrew M.
Published in Cell reports (Cambridge) (11.08.2020)
Published in Cell reports (Cambridge) (11.08.2020)
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The Na+-dependent chloride-bicarbonate exchanger SLC4A8 mediates an electroneutral Na+ reabsorption process in the renal cortical collecting ducts of mice
Leviel, Françoise, Hübner, Christian A, Houillier, Pascal, Morla, Luciana, El Moghrabi, Soumaya, Brideau, Gaëlle, Hassan, Hatim, Hatim, Hassan, Parker, Mark D, Kurth, Ingo, Kougioumtzes, Alexandra, Sinning, Anne, Pech, Vladimir, Riemondy, Kent A, Miller, R Lance, Hummler, Edith, Shull, Gary E, Aronson, Peter S, Doucet, Alain, Wall, Susan M, Chambrey, Régine, Eladari, Dominique
Published in The Journal of clinical investigation (03.05.2010)
Published in The Journal of clinical investigation (03.05.2010)
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Chronic Liver Disease in Humans Causes Expansion and Differentiation of Liver Lymphatic Endothelial Cells
Tamburini, Beth A Jiron, Finlon, Jeffrey M, Gillen, Austin E, Kriss, Michael S, Riemondy, Kent A, Fu, Rui, Schuyler, Ronald P, Hesselberth, Jay R, Rosen, Hugo R, Burchill, Matthew A
Published in Frontiers in immunology (15.05.2019)
Published in Frontiers in immunology (15.05.2019)
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clustifyr: an R package for automated single-cell RNA sequencing cluster classification [version 2; peer review: 2 approved]
Fu, Rui, Gillen, Austin E, Sheridan, Ryan M, Tian, Chengzhe, Daya, Michelle, Hao, Yue, Hesselberth, Jay R, Riemondy, Kent A
Published in F1000 research (2020)
Published in F1000 research (2020)
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Liver Transcriptome Dynamics During Hibernation Are Shaped by a Shifting Balance Between Transcription and RNA Stability
Gillen, Austin E, Fu, Rui, Riemondy, Kent A, Jager, Jennifer, Fang, Bin, Lazar, Mitchell A, Martin, Sandra L
Published in Frontiers in physiology (21.05.2021)
Published in Frontiers in physiology (21.05.2021)
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Overexpression of Pendrin in Intercalated Cells Produces Chloride-Sensitive Hypertension
JACQUES, Thibaut, PICARD, Nicolas, HASSAN, Hatim, ARONSON, Peter S, HENNINGS, Jean Christopher, HÜBNER, Christian A, NELSON, Raoul D, CHAMBREY, Régine, ELADARI, Dominique, MILLER, R. Lance, RIEMONDY, Kent A, HOUILLIER, Pascal, SOHET, Fabien, RAMAKRISHNAN, Suresh K, BÜSST, Cara J, JAYAT, Maximilien, CORNIERE, Nicolas
Published in Journal of the American Society of Nephrology (01.07.2013)
Published in Journal of the American Society of Nephrology (01.07.2013)
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Dynamic RNA Regulation in the Brain Underlies Physiological Plasticity in a Hibernating Mammal
Fu, Rui, Gillen, Austin E, Grabek, Katharine R, Riemondy, Kent A, Epperson, L Elaine, Bustamante, Carlos D, Hesselberth, Jay R, Martin, Sandra L
Published in Frontiers in physiology (18.01.2021)
Published in Frontiers in physiology (18.01.2021)
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Integration of single-nuclei RNA-sequencing, spatial transcriptomics and histochemistry defines the complex microenvironment of NF1-associated plexiform neurofibromas
Amani, Vladimir, Riemondy, Kent A, Fu, Rui, Griesinger, Andrea M, Grimaldo, Enrique, De Sousa, Graziella Ribeiro, Gilani, Ahmed, Hemenway, Molly, Foreman, Nicholas K, Donson, Andrew M, Willard, Nicholas
Published in Acta neuropathologica communications (28.09.2023)
Published in Acta neuropathologica communications (28.09.2023)
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valr: Reproducible genome interval analysis in R
Riemondy, Kent A, Sheridan, Ryan M, Gillen, Austin, Yu, Yinni, Bennett, Christopher G, Hesselberth, Jay R
Published in F1000 research (2017)
Published in F1000 research (2017)
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Venetoclax with azacitidine disrupts energy metabolism and targets leukemia stem cells in patients with acute myeloid leukemia
Pollyea, Daniel A, Stevens, Brett M, Jones, Courtney L, Winters, Amanda, Pei, Shanshan, Minhajuddin, Mohammad, D'Alessandro, Angelo, Culp-Hill, Rachel, Riemondy, Kent A, Gillen, Austin E, Hesselberth, Jay R, Abbott, Diana, Schatz, Derek, Gutman, Jonathan A, Purev, Enkhtsetseg, Smith, Clayton, Jordan, Craig T
Published in Nature medicine (01.12.2018)
Published in Nature medicine (01.12.2018)
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The V-ATPase B1-subunit promoter drives expression of Cre recombinase in intercalated cells of the kidney
Miller, R. Lance, Lucero, Olivia M., Riemondy, Kent A., Baumgartner, Brett K., Brown, Dennis, Breton, Sylvie, Nelson, Raoul D.
Published in Kidney international (01.02.2009)
Published in Kidney international (01.02.2009)
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Fatal COVID-19 and Non–COVID-19 Acute Respiratory Distress Syndrome Is Associated with Incomplete Alveolar Type 1 Epithelial Cell Differentiation from the Transitional State without Fibrosis
Ting, Christopher, Aspal, Mohit, Vaishampayan, Neil, Huang, Steven K., Riemondy, Kent A., Wang, Fa, Farver, Carol, Zemans, Rachel L.
Published in The American journal of pathology (01.03.2022)
Published in The American journal of pathology (01.03.2022)
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Monocytic Subclones Confer Resistance to Venetoclax-Based Therapy in Patients with Acute Myeloid Leukemia
Pei, Shanshan, Pollyea, Daniel A, Gustafson, Annika, Stevens, Brett M, Minhajuddin, Mohammad, Fu, Rui, Riemondy, Kent A, Gillen, Austin E, Sheridan, Ryan M, Kim, Jihye, Costello, James C, Amaya, Maria L, Inguva, Anagha, Winters, Amanda, Ye, Haobin, Krug, Anna, Jones, Courtney L, Adane, Biniam, Khan, Nabilah, Ponder, Jessica, Schowinsky, Jeffrey, Abbott, Diana, Hammes, Andrew, Myers, Jason R, Ashton, John M, Nemkov, Travis, D'Alessandro, Angelo, Gutman, Jonathan A, Ramsey, Haley E, Savona, Michael R, Smith, Clayton A, Jordan, Craig T
Published in Cancer discovery (01.04.2020)
Published in Cancer discovery (01.04.2020)
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Simultaneous measurement of biochemical phenotypes and gene expression in single cells
Richer, Amanda L, Riemondy, Kent A, Hardie, Lakotah, Hesselberth, Jay R
Published in Nucleic acids research (04.06.2020)
Published in Nucleic acids research (04.06.2020)
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Journal Article
Neoplastic and immune single-cell transcriptomics define subgroup-specific intra-tumoral heterogeneity of childhood medulloblastoma
Riemondy, Kent A, Venkataraman, Sujatha, Willard, Nicholas, Nellan, Anandani, Sanford, Bridget, Griesinger, Andrea M, Amani, Vladimir, Mitra, Siddhartha, Hankinson, Todd C, Handler, Michael H, Sill, Martin, Ocasio, Jennifer, Weir, Seth J, Malawsky, Daniel S, Gershon, Timothy R, Garancher, Alexandra, Wechsler-Reya, Robert J, Hesselberth, Jay R, Foreman, Nicholas K, Donson, Andrew M, Vibhakar, Rajeev
Published in Neuro-oncology (Charlottesville, Va.) (01.02.2022)
Published in Neuro-oncology (Charlottesville, Va.) (01.02.2022)
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Regulation of epithelial transitional states in murine and human pulmonary fibrosis
Wang, Fa, Ting, Christopher, Riemondy, Kent A, Douglas, Michael, Foster, Kendall, Patel, Nisha, Kaku, Norihito, Linsalata, Alexander, Nemzek, Jean, Varisco, Brian M, Cohen, Erez, Wilson, Jasmine A, Riches, David Wh, Redente, Elizabeth F, Toivola, Diana M, Zhou, Xiaofeng, Moore, Bethany B, Coulombe, Pierre A, Omary, M Bishr, Zemans, Rachel L
Published in The Journal of clinical investigation (15.11.2023)
Published in The Journal of clinical investigation (15.11.2023)
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Spatial transcriptomic analysis delineates epithelial and mesenchymal subpopulations and transition stages in childhood ependymoma
Fu, Rui, Norris, Gregory A, Willard, Nicholas, Griesinger, Andrea M, Riemondy, Kent A, Amani, Vladimir, Grimaldo, Enrique, Harris, Faith, Hankinson, Todd C, Mitra, Siddhartha, Ritzmann, Timothy A, Grundy, Richard R, Foreman, Nicholas K, Donson, Andrew M
Published in Neuro-oncology (Charlottesville, Va.) (06.04.2023)
Published in Neuro-oncology (Charlottesville, Va.) (06.04.2023)
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