The orchestrated cellular and molecular responses of the kidney to endotoxin define a precise sepsis timeline
Janosevic, Danielle, Myslinski, Jered, McCarthy, Thomas W, Zollman, Amy, Syed, Farooq, Xuei, Xiaoling, Gao, Hongyu, Liu, Yun-Long, Collins, Kimberly S, Cheng, Ying-Hua, Winfree, Seth, El-Achkar, Tarek M, Maier, Bernhard, Melo Ferreira, Ricardo, Eadon, Michael T, Hato, Takashi, Dagher, Pierre C
Published in eLife (15.01.2021)
Published in eLife (15.01.2021)
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Journal Article
Integration of spatial and single-cell transcriptomics localizes epithelial cell-immune cross-talk in kidney injury
Melo Ferreira, Ricardo, Sabo, Angela R, Winfree, Seth, Collins, Kimberly S, Janosevic, Danielle, Gulbronson, Connor J, Cheng, Ying-Hua, Casbon, Lauren, Barwinska, Daria, Ferkowicz, Michael J, Xuei, Xiaoling, Zhang, Chi, Dunn, Kenneth W, Kelly, Katherine J, Sutton, Timothy A, Hato, Takashi, Dagher, Pierre C, El-Achkar, Tarek M, Eadon, Michael T
Published in JCI insight (22.06.2021)
Published in JCI insight (22.06.2021)
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Journal Article
Alterations in Protein Translation and Carboxylic Acid Catabolic Processes in Diabetic Kidney Disease
Collins, Kimberly S, Eadon, Michael T, Cheng, Ying-Hua, Barwinska, Daria, Melo Ferreira, Ricardo, McCarthy, Thomas W, Janosevic, Danielle, Syed, Farooq, Maier, Bernhard, El-Achkar, Tarek M, Kelly, Katherine J, Phillips, Carrie L, Hato, Takashi, Sutton, Timothy A, Dagher, Pierre C
Published in Cells (Basel, Switzerland) (30.03.2022)
Published in Cells (Basel, Switzerland) (30.03.2022)
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Journal Article
Spatial transcriptomics and the kidney
Melo Ferreira, Ricardo, Gisch, Debora L, Eadon, Michael T
Published in Current opinion in nephrology and hypertension (01.05.2022)
Published in Current opinion in nephrology and hypertension (01.05.2022)
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Journal Article
Deconvolution Tactics and Normalization in Renal Spatial Transcriptomics
Melo Ferreira, Ricardo, Freije, Benjamin J, Eadon, Michael T
Published in Frontiers in physiology (13.01.2022)
Published in Frontiers in physiology (13.01.2022)
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Journal Article
A spatially anchored transcriptomic atlas of the human kidney papilla identifies significant immune injury in patients with stone disease
Canela, Victor Hugo, Bowen, William S., Ferreira, Ricardo Melo, Syed, Farooq, Lingeman, James E., Sabo, Angela R., Barwinska, Daria, Winfree, Seth, Lake, Blue B., Cheng, Ying-Hua, Gaut, Joseph P., Ferkowicz, Michael, LaFavers, Kaice A., Zhang, Kun, Coe, Fredric L., Worcester, Elaine, Jain, Sanjay, Eadon, Michael T., Williams, James C., El-Achkar, Tarek M.
Published in Nature communications (19.07.2023)
Published in Nature communications (19.07.2023)
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Journal Article
Molecular Signatures of Glomerular Neovascularization in a Patient with Diabetic Kidney Disease
Ferkowicz, Michael J, Verma, Ashish, Barwinska, Daria, Melo Ferreira, Ricardo, Henderson, Joel M, Kirkpatrick, Mary, Silva, Paolo S, Steenkamp, Devin W, Phillips, Carrie L, Waikar, Sushrut S, Sutton, Timothy A
Published in Clinical journal of the American Society of Nephrology (01.02.2024)
Published in Clinical journal of the American Society of Nephrology (01.02.2024)
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Journal Article
Clinical, histopathologic and molecular features of idiopathic and diabetic nodular mesangial sclerosis in humans
Eadon, Michael T, Lampe, Sam, Baig, Mirza M, Collins, Kimberly S, Melo Ferreira, Ricardo, Mang, Henry, Cheng, Ying-Hua, Barwinska, Daria, El-Achkar, Tarek M, Schwantes-An, Tae-Hwi, Winfree, Seth, Temm, Constance J, Ferkowicz, Michael J, Dunn, Kenneth W, Kelly, Katherine J, Sutton, Timothy A, Moe, Sharon M, Moorthi, Ranjani N, Phillips, Carrie L, Dagher, Pierre C
Published in Nephrology, dialysis, transplantation (31.12.2021)
Published in Nephrology, dialysis, transplantation (31.12.2021)
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Journal Article
Molecular characterization of the human kidney interstitium in health and disease
Barwinska, Daria, El-Achkar, Tarek M, Melo Ferreira, Ricardo, Syed, Farooq, Cheng, Ying-Hua, Winfree, Seth, Ferkowicz, Michael J, Hato, Takashi, Collins, Kimberly S, Dunn, Kenneth W, Kelly, Katherine J, Sutton, Timothy A, Rovin, Brad H, Parikh, Samir V, Phillips, Carrie L, Dagher, Pierre C, Eadon, Michael T
Published in Science advances (01.02.2021)
Published in Science advances (01.02.2021)
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Journal Article
Pharmacogenomics of Hypertension in CKD: The CKD-PGX Study
Eadon, Michael T, Maddatu, Judith, Moe, Sharon M, Sinha, Arjun D, Ferreira, Ricardo Melo, Miller, Brent W, Sher, S Jawad, Su, Jing, Pratt, Victoria M, Chapman, Arlene B, Skaar, Todd C, Moorthi, Ranjani N
Published in Kidney360 (01.02.2022)
Published in Kidney360 (01.02.2022)
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Journal Article
FUSION: A web-based application for in-depth exploration of multi-omics data with brightfield histology
Border, Samuel, Melo Ferreira, Ricardo, Lucarelli, Nicholas, Manthey, David, Kumar, Suhas, Paul, Anindya, Mimar, Sayat, Naglah, Ahmed, Cheng, Ying-Hua, Barisoni, Laura, Ray, Jessica, Strekalova, Yulia, Rosenberg, Avi Z, Tomaszewski, John E, Hodgin, Jeffrey B, El-Achkar, Tarek M, Jain, Sanjay, Eadon, Michael T, Sarder, Pinaki
Published in bioRxiv (22.08.2024)
Published in bioRxiv (22.08.2024)
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Journal Article
The Human MicroRNA-mRNA Transcriptome in AKI: FR-PO131
De Luca, Thomas, ferreira, Ricardo Melo, Eadon, Michael T., Janosevic, Danielle
Published in Journal of the American Society of Nephrology (01.11.2022)
Published in Journal of the American Society of Nephrology (01.11.2022)
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Journal Article
Multimodal Data Analysis with Spatial Transcriptomics: FR-PO033
Border, Samuel, Lucarelli, Nicholas, Naglah, Ahmed, Mimar, Sayat, El-Achkar, Tarek M., Jain, Sanjay, Ferreira, Ricardo Melo, Eadon, Michael T., Sarder, Pinaki
Published in Journal of the American Society of Nephrology (01.11.2023)
Published in Journal of the American Society of Nephrology (01.11.2023)
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Journal Article
Proximal Tubular S3 Cells Expressing Angiotensinogen Localize to the Outer Stripe of the Outer Medulla: PO0232
Janosevic, Danielle, ferreira, Ricardo Melo, Eadon, Michael T., Syed, Farooq, Hato, Takashi, Dagher, Pierre C.
Published in Journal of the American Society of Nephrology (01.10.2020)
Published in Journal of the American Society of Nephrology (01.10.2020)
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Journal Article
Multimodal Single-Cell and Spatial Atlas of Interstitial and Vascular Niches in Reference and Diseased Kidneys: SA-OR27
Lake, Blue, Menon, Rajasree, Melo Ferreira, Ricardo, Chen, Xi, Hansen, Jens, Sealfon, Rachel S., Schaub, Jennifer A., Rosas, Sylvia E., Gaut, Joseph, Barisoni, Laura, Kretzler, Matthias, Zhang, Kun, Hodgin, Jeffrey B., Eadon, Michael T., Jain, Sanjay
Published in Journal of the American Society of Nephrology (01.10.2024)
Published in Journal of the American Society of Nephrology (01.10.2024)
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Journal Article
Computational Segmentation of Glomeruli to Align Histomorphology With Spatial Transcriptomic Signature: SA-PO001
Ginley, Brandon, ferreira, Ricardo Melo, Balis, Ulysses G., Jain, Sanjay, Tomaszewski, John E., El-Achkar, Tarek M., Eadon, Michael T., Sarder, Pinaki
Published in Journal of the American Society of Nephrology (01.11.2022)
Published in Journal of the American Society of Nephrology (01.11.2022)
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Journal Article
Molecular Signatures of Glomerular Neovascularization in a Patient With Diabetic Kidney Disease: PUB102
Barwinska, Daria, Verma, Ashish, Ferkowicz, Michael J., ferreira, Ricardo Melo, Henderson, Joel M., Steenkamp, Devin, Phillips, Carrie L., Kirkpatrick, Mary P., Waikar, Sushrut S., Sutton, Timothy A.
Published in Journal of the American Society of Nephrology (01.11.2022)
Published in Journal of the American Society of Nephrology (01.11.2022)
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Journal Article
Uromodulin and Injury Severity Alter Neutrophil Diversity and Signaling in AKI: FR-PO154
Winfree, Seth, LaFavers, Kaice A., Khan, Shehnaz, Micanovic, Radmila, ferreira, Ricardo Melo, Cheng, Ying-Hua, Eadon, Michael T., El-Achkar, Tarek M.
Published in Journal of the American Society of Nephrology (01.11.2022)
Published in Journal of the American Society of Nephrology (01.11.2022)
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Journal Article
Proximal Tubule Neighborhood in AKI, CKD, and Healthy Control Kidney Tissue Using Spatial Transcriptomics: FR-PO017
Asghari, Mahla, Ferreira, Ricardo Melo, Cheng, Ying-Hua, Gisch, Debora L., Barwinska, Daria, Sabo, Angela R., Kretzler, Matthias, Himmelfarb, Jonathan, Dagher, Pierre C., Winfree, Seth, Jain, Sanjay, El-Achkar, Tarek M., Eadon, Michael T.
Published in Journal of the American Society of Nephrology (01.11.2023)
Published in Journal of the American Society of Nephrology (01.11.2023)
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Journal Article
Diverse Immune, Stromal, and Vascular Niches Along the Cortico-Medullary Axis of the Human Kidneys by Integrating 10 Different Modalities Performed on the Same Tissue Block: FR-PO021
Winfree, Seth, Lake, Blue, Ferreira, Ricardo Melo, Fung, Anthony A., Sabo, Angela R., Kaushal, Madhurima, Barwinska, Daria, Zhang, Bo, Gaut, Joseph, Zhang, Kun, Shi, Lingyan, Eadon, Michael T., El-Achkar, Tarek M., Jain, Sanjay
Published in Journal of the American Society of Nephrology (01.11.2023)
Published in Journal of the American Society of Nephrology (01.11.2023)
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Journal Article