PulseNet: Entering the Age of Next-Generation Sequencing
Ribot, Efrain M, Freeman, Molly, Hise, Kelley B, Gerner-Smidt, Peter
Published in Foodborne pathogens and disease (01.07.2019)
Published in Foodborne pathogens and disease (01.07.2019)
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Journal Article
An Overview of PulseNet USA Databases
Tolar, Beth, Joseph, Lavin A, Schroeder, Morgan N, Stroika, Steven, Ribot, Efrain M, Hise, Kelley B, Gerner-Smidt, Peter
Published in Foodborne pathogens and disease (01.07.2019)
Published in Foodborne pathogens and disease (01.07.2019)
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Journal Article
Novel Virulence Gene and Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Multilocus Sequence Typing Scheme for Subtyping of the Major Serovars of Salmonella enterica subsp. enterica
Liu, Fenyun, Barrangou, Rodolphe, Gerner-Smidt, Peter, Ribot, Efrain M, Knabel, Stephen J, Dudley, Edward G
Published in Applied and Environmental Microbiology (01.03.2011)
Published in Applied and Environmental Microbiology (01.03.2011)
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Subtyping Salmonella enterica Serovar Enteritidis Isolates from Different Sources by Using Sequence Typing Based on Virulence Genes and Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs)
Liu, Fenyun, Kariyawasam, Subhashinie, Jayarao, Bhushan M, Barrangou, Rodolphe, Gerner-Smidt, Peter, Ribot, Efrain M, Knabel, Stephen J, Dudley, Edward G
Published in Applied and Environmental Microbiology (01.07.2011)
Published in Applied and Environmental Microbiology (01.07.2011)
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Journal Article
Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet
Ribot, Efrain M, Fair, M A, Gautom, R, Cameron, D N, Hunter, S B, Swaminathan, B, Barrett, Timothy J
Published in Foodborne pathogens and disease (01.03.2006)
Published in Foodborne pathogens and disease (01.03.2006)
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Journal Article
Establishment of a Universal Size Standard Strain for Use with the PulseNet Standardized Pulsed-Field Gel Electrophoresis Protocols: Converting the National Databases to the New Size Standard
Hunter, Susan B, Vauterin, Paul, Lambert-Fair, Mary Ann, Van Duyne, M. Susan, Kubota, Kristy, Graves, Lewis, Wrigley, Donna, Barrett, Timothy, Ribot, Efrain
Published in Journal of Clinical Microbiology (01.03.2005)
Published in Journal of Clinical Microbiology (01.03.2005)
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Journal Article
Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7
Griffing, Sean M, MacCannell, Duncan R, Schmidtke, Amber J, Freeman, Molly M, Hyytiä-Trees, Eija, Gerner-Smidt, Peter, Ribot, Efrain M, Bono, James L
Published in PloS one (01.07.2015)
Published in PloS one (01.07.2015)
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Journal Article
Invasive Escherichia coli are a feature of Crohn's disease
Sasaki, Maiko, Sitaraman, Shanti V, Babbin, Brian A, Gerner-Smidt, Peter, Ribot, Efrain M, Garrett, Nancy, Alpern, Joel A, Akyildiz, Adil, Theiss, Arianne L, Nusrat, Asma, Klapproth, Jan-Michael A
Published in Laboratory investigation (01.10.2007)
Published in Laboratory investigation (01.10.2007)
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Journal Article
Multiple-locus variable-number tandem repeat analysis for strain discrimination of non-O157 Shiga toxin-producing Escherichia coli
Timmons, Chris, Trees, Eija, Ribot, Efrain M., Gerner-Smidt, Peter, LaFon, Patti, Im, Sung, Ma, Li Maria
Published in Journal of microbiological methods (01.06.2016)
Published in Journal of microbiological methods (01.06.2016)
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Journal Article
Multilaboratory validation study of standardized multiple-locus variable-number tandem repeat analysis protocol for shiga toxin-producing Escherichia coli O157: a novel approach to normalize fragment size data between capillary electrophoresis platforms
Hyytia-Trees, Eija, Lafon, Patricia, Vauterin, Paul, Ribot, Efrain M
Published in Foodborne pathogens and disease (01.02.2010)
Published in Foodborne pathogens and disease (01.02.2010)
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Journal Article
Second generation subtyping: a proposed PulseNet protocol for multiple-locus variable-number tandem repeat analysis of Shiga toxin-producing Escherichia coli O157 (STEC O157)
Hyytiä-Trees, Eija, Smole, Sandra C, Fields, Patricia A, Swaminathan, Bala, Ribot, Efrain M
Published in Foodborne pathogens and disease (01.03.2006)
Published in Foodborne pathogens and disease (01.03.2006)
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Journal Article
Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms
Zhang, Wei, Qi, Weihong, Albert, Thomas J, Motiwala, Alifiya S, Alland, David, Hyytia-Trees, Eija K, Ribot, Efrain M, Fields, Patricia I, Whittam, Thomas S, Swaminathan, Bala
Published in Genome Research (01.06.2006)
Published in Genome Research (01.06.2006)
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Journal Article
Development and validation of a PulseNet standardized protocol for subtyping isolates of Cronobacter species
Brengi, Silvina P, O'Brien, Stephen B, Pichel, Mariana, Iversen, Carol, Arduino, Matthew, Binsztein, Norma, Jensen, Bette, Pagotto, Franco, Ribot, Efrain M, Stephan, Roger, Cernela, Nicole, Cooper, Kara, Fanning, Séamus
Published in Foodborne pathogens and disease (01.09.2012)
Published in Foodborne pathogens and disease (01.09.2012)
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Journal Article
Recent developments and future prospects in subtyping of foodborne bacterial pathogens
Hyytiä-Trees, Eija K, Cooper, Kara, Ribot, Efrain M, Gerner-Smidt, Peter
Published in Future microbiology (01.04.2007)
Published in Future microbiology (01.04.2007)
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Journal Article
Re-evaluation, optimization, and multilaboratory validation of the PulseNet-standardized pulsed-field gel electrophoresis protocol for Listeria monocytogenes
Halpin, Jessica L, Garrett, Nancy M, Ribot, Efrain M, Graves, Lewis M, Cooper, Kara L
Published in Foodborne pathogens and disease (01.03.2010)
Published in Foodborne pathogens and disease (01.03.2010)
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Journal Article
Global Distribution of Shigella sonnei Clones
Filliol-Toutain, Ingrid, Chiou, Chien-Shun, Mammina, Caterina, Gerner-Smidt, Peter, Thong, Kwai-Lin, Phung, Dac Cam, Pichel, Mariana, Ranjbar, Reza, Sow, Amy Gassama, Cooper, Kara, Ribot, Efrain, Binsztein, Norma, Liang, Shiu-Yun
Published in Emerging infectious diseases (01.10.2011)
Published in Emerging infectious diseases (01.10.2011)
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