Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA
Renaud, Gabriel, Slon, Viviane, Duggan, Ana T, Kelso, Janet
Published in Genome Biology (12.10.2015)
Published in Genome Biology (12.10.2015)
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Journal Article
deML: robust demultiplexing of Illumina sequences using a likelihood-based approach
Renaud, Gabriel, Stenzel, Udo, Maricic, Tomislav, Wiebe, Victor, Kelso, Janet
Published in Bioinformatics (01.03.2015)
Published in Bioinformatics (01.03.2015)
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Journal Article
gargammel: a sequence simulator for ancient DNA
Renaud, Gabriel, Hanghøj, Kristian, Willerslev, Eske, Orlando, Ludovic
Published in Bioinformatics (Oxford, England) (15.02.2017)
Published in Bioinformatics (Oxford, England) (15.02.2017)
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Journal Article
Nuclear and mitochondrial DNA sequences from two Denisovan individuals
Sawyer, Susanna, Renaud, Gabriel, Viola, Bence, Hublin, Jean-Jacques, Gansauge, Marie-Theres, Shunkov, Michael V., Derevianko, Anatoly P., Prüfer, Kay, Kelso, Janet, Pääbo, Svante
Published in Proceedings of the National Academy of Sciences - PNAS (22.12.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (22.12.2015)
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Journal Article
Pleistocene Mitochondrial Genomes Suggest a Single Major Dispersal of Non-Africans and a Late Glacial Population Turnover in Europe
Posth, Cosimo, Renaud, Gabriel, Mittnik, Alissa, Drucker, Dorothée G., Rougier, Hélène, Cupillard, Christophe, Valentin, Frédérique, Thevenet, Corinne, Furtwängler, Anja, Wißing, Christoph, Francken, Michael, Malina, Maria, Bolus, Michael, Lari, Martina, Gigli, Elena, Capecchi, Giulia, Crevecoeur, Isabelle, Beauval, Cédric, Flas, Damien, Germonpré, Mietje, van der Plicht, Johannes, Cottiaux, Richard, Gély, Bernard, Ronchitelli, Annamaria, Wehrberger, Kurt, Grigorescu, Dan, Svoboda, Jiří, Semal, Patrick, Caramelli, David, Bocherens, Hervé, Harvati, Katerina, Conard, Nicholas J., Haak, Wolfgang, Powell, Adam, Krause, Johannes
Published in Current biology (21.03.2016)
Published in Current biology (21.03.2016)
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Web Resource
A diversity profile of the human skin microbiota
Grice, Elizabeth A, Kong, Heidi H, Renaud, Gabriel, Young, Alice C, Bouffard, Gerard G, Blakesley, Robert W, Wolfsberg, Tyra G, Turner, Maria L, Segre, Julia A
Published in Genome Research (01.07.2008)
Published in Genome Research (01.07.2008)
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Journal Article
Ancient Clostridium DNA and variants of tetanus neurotoxins associated with human archaeological remains
Hodgins, Harold P., Chen, Pengsheng, Lobb, Briallen, Wei, Xin, Tremblay, Benjamin J. M., Mansfield, Michael J., Lee, Victoria C. Y., Lee, Pyung-Gang, Coffin, Jeffrey, Duggan, Ana T., Dolphin, Alexis E., Renaud, Gabriel, Dong, Min, Doxey, Andrew C.
Published in Nature communications (06.09.2023)
Published in Nature communications (06.09.2023)
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Journal Article
euka: Robust tetrapodic and arthropodic taxa detection from modern and ancient environmental DNA using pangenomic reference graphs
Vogel, Nicola Alexandra, Rubin, Joshua Daniel, Swartz, Mikkel, Vlieghe, Juliette, Sackett, Peter Wad, Pedersen, Anders Gorm, Pedersen, Mikkel Winther, Renaud, Gabriel
Published in Methods in ecology and evolution (01.11.2023)
Published in Methods in ecology and evolution (01.11.2023)
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Journal Article
Unsupervised detection of fragment length signatures of circulating tumor DNA using non-negative matrix factorization
Renaud, Gabriel, Nørgaard, Maibritt, Lindberg, Johan, Grönberg, Henrik, De Laere, Bram, Jensen, Jørgen Bjerggaard, Borre, Michael, Andersen, Claus Lindbjerg, Sørensen, Karina Dalsgaard, Maretty, Lasse, Besenbacher, Søren
Published in eLife (27.07.2022)
Published in eLife (27.07.2022)
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Journal Article
DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays
Crawford, Gregory E, Davis, Sean, Scacheri, Peter C, Renaud, Gabriel, Halawi, Mohamad J, Erdos, Michael R, Green, Roland, Meltzer, Paul S, Wolfsberg, Tyra G, Collins, Francis S
Published in Nature methods (01.07.2006)
Published in Nature methods (01.07.2006)
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Journal Article
Predisposition to cancer caused by genetic and functional defects of mammalian Atad5
Bell, Daphne W, Sikdar, Nilabja, Lee, Kyoo-Young, Price, Jessica C, Chatterjee, Raghunath, Park, Hee-Dong, Fox, Jennifer, Ishiai, Masamichi, Rudd, Meghan L, Pollock, Lana M, Fogoros, Sarah K, Mohamed, Hassan, Hanigan, Christin L, Zhang, Suiyuan, Cruz, Pedro, Renaud, Gabriel, Hansen, Nancy F, Cherukuri, Praveen F, Borate, Bhavesh, McManus, Kirk J, Stoepel, Jan, Sipahimalani, Payal, Godwin, Andrew K, Sgroi, Dennis C, Merino, Maria J, Elliot, Gene, Elkahloun, Abdel, Vinson, Charles, Takata, Minoru, Mullikin, James C, Wolfsberg, Tyra G, Hieter, Philip, Lim, Dae-Sik, Myung, Kyungjae
Published in PLoS genetics (01.08.2011)
Published in PLoS genetics (01.08.2011)
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Journal Article
Identification of neural crest and glial enhancers at the mouse Sox10 locus through transgenesis in zebrafish
Antonellis, Anthony, Huynh, Jimmy L, Lee-Lin, Shih-Queen, Vinton, Ryan M, Renaud, Gabriel, Loftus, Stacie K, Elliot, Gene, Wolfsberg, Tyra G, Green, Eric D, McCallion, Andrew S, Pavan, William J
Published in PLoS genetics (01.09.2008)
Published in PLoS genetics (01.09.2008)
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Journal Article
Segtor: rapid annotation of genomic coordinates and single nucleotide variations using segment trees
Renaud, Gabriel, Neves, Pedro, Folador, Edson Luiz, Ferreira, Carlos Gil, Passetti, Fabio
Published in PloS one (01.11.2011)
Published in PloS one (01.11.2011)
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