2016 update of the PRIDE database and its related tools
Vizcaíno, Juan Antonio, Csordas, Attila, del-Toro, Noemi, Dianes, José A, Griss, Johannes, Lavidas, Ilias, Mayer, Gerhard, Perez-Riverol, Yasset, Reisinger, Florian, Ternent, Tobias, Xu, Qing-Wei, Wang, Rui, Hermjakob, Henning
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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Journal Article
2016 update of the PRIDE database and its related tools
Vizcaíno, Juan Antonio, Csordas, Attila, Del-Toro, Noemi, Dianes, José A, Griss, Johannes, Lavidas, Ilias, Mayer, Gerhard, Perez-Riverol, Yasset, Reisinger, Florian, Ternent, Tobias, Xu, Qing-Wei, Wang, Rui, Hermjakob, Henning
Published in Nucleic acids research (15.12.2016)
Published in Nucleic acids research (15.12.2016)
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Journal Article
Distinct Functions of Senescence-Associated Immune Responses in Liver Tumor Surveillance and Tumor Progression
Eggert, Tobias, Wolter, Katharina, Ji, Juling, Ma, Chi, Yevsa, Tetyana, Klotz, Sabrina, Medina-Echeverz, José, Longerich, Thomas, Forgues, Marshonna, Reisinger, Florian, Heikenwalder, Mathias, Wang, Xin Wei, Zender, Lars, Greten, Tim F.
Published in Cancer cell (10.10.2016)
Published in Cancer cell (10.10.2016)
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Journal Article
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013
Vizcaíno, Juan Antonio, Côté, Richard G, Csordas, Attila, Dianes, José A, Fabregat, Antonio, Foster, Joseph M, Griss, Johannes, Alpi, Emanuele, Birim, Melih, Contell, Javier, O'Kelly, Gavin, Schoenegger, Andreas, Ovelleiro, David, Pérez-Riverol, Yasset, Reisinger, Florian, Ríos, Daniel, Wang, Rui, Hermjakob, Henning
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Journal Article
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
Vizcaíno, Juan A, Deutsch, Eric W, Wang, Rui, Csordas, Attila, Reisinger, Florian, Ríos, Daniel, Dianes, José A, Sun, Zhi, Farrah, Terry, Bandeira, Nuno, Binz, Pierre-Alain, Xenarios, Ioannis, Eisenacher, Martin, Mayer, Gerhard, Gatto, Laurent, Campos, Alex, Chalkley, Robert J, Kraus, Hans-Joachim, Albar, Juan Pablo, Martinez-Bartolomé, Salvador, Apweiler, Rolf, Omenn, Gilbert S, Martens, Lennart, Jones, Andrew R, Hermjakob, Henning
Published in Nature biotechnology (01.03.2014)
Published in Nature biotechnology (01.03.2014)
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Journal Article
mTOR regulates MAPKAPK2 translation to control the senescence-associated secretory phenotype
Herranz, Nicolás, Gallage, Suchira, Mellone, Massimiliano, Wuestefeld, Torsten, Klotz, Sabrina, Hanley, Christopher J., Raguz, Selina, Acosta, Juan Carlos, Innes, Andrew J., Banito, Ana, Georgilis, Athena, Montoya, Alex, Wolter, Katharina, Dharmalingam, Gopuraja, Faull, Peter, Carroll, Thomas, Martínez-Barbera, Juan Pedro, Cutillas, Pedro, Reisinger, Florian, Heikenwalder, Mathias, Miller, Richard A., Withers, Dominic, Zender, Lars, Thomas, Gareth J., Gil, Jesús
Published in Nature cell biology (01.09.2015)
Published in Nature cell biology (01.09.2015)
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Journal Article
Specific and Nonhepatotoxic Degradation of Nuclear Hepatitis B Virus cccDNA
Lucifora, Julie, Xia, Yuchen, Reisinger, Florian, Zhang, Ke, Stadler, Daniela, Cheng, Xiaoming, Sprinzl, Martin F., Koppensteiner, Herwig, Makowska, Zuzanna, Volz, Tassilo, Remouchamps, Caroline, Chou, Wen-Min, Thasler, Wolfgang E., Hüser, Norbert, Durantel, David, Liang, T. Jake, Münk, Carsten, Heim, Markus H., Browning, Jeffrey L., Dejardin, Emmanuel, Dandri, Maura, Schindler, Michael, Heikenwalder, Mathias, Protzer, Ulrike
Published in Science (American Association for the Advancement of Science) (14.03.2014)
Published in Science (American Association for the Advancement of Science) (14.03.2014)
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Journal Article
Web Resource
PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets
Perez-Riverol, Yasset, Xu, Qing-Wei, Wang, Rui, Uszkoreit, Julian, Griss, Johannes, Sanchez, Aniel, Reisinger, Florian, Csordas, Attila, Ternent, Tobias, del-Toro, Noemi, Dianes, Jose A., Eisenacher, Martin, Hermjakob, Henning, Vizcaíno, Juan Antonio
Published in Molecular & cellular proteomics (01.01.2016)
Published in Molecular & cellular proteomics (01.01.2016)
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Journal Article
A positive feedback loop between RIP3 and JNK controls non‐alcoholic steatohepatitis
Gautheron, Jérémie, Vucur, Mihael, Reisinger, Florian, Cardenas, David Vargas, Roderburg, Christoph, Koppe, Christiane, Kreggenwinkel, Karina, Schneider, Anne Theres, Bartneck, Matthias, Neumann, Ulf Peter, Canbay, Ali, Reeves, Helen Louise, Luedde, Mark, Tacke, Frank, Trautwein, Christian, Heikenwalder, Mathias, Luedde, Tom
Published in EMBO molecular medicine (01.08.2014)
Published in EMBO molecular medicine (01.08.2014)
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Journal Article
mzML—a Community Standard for Mass Spectrometry Data
Martens, Lennart, Chambers, Matthew, Sturm, Marc, Kessner, Darren, Levander, Fredrik, Shofstahl, Jim, Tang, Wilfred H., Römpp, Andreas, Neumann, Steffen, Pizarro, Angel D., Montecchi-Palazzi, Luisa, Tasman, Natalie, Coleman, Mike, Reisinger, Florian, Souda, Puneet, Hermjakob, Henning, Binz, Pierre-Alain, Deutsch, Eric W.
Published in Molecular & cellular proteomics (01.01.2011)
Published in Molecular & cellular proteomics (01.01.2011)
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Journal Article
The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience
Griss, Johannes, Jones, Andrew R., Sachsenberg, Timo, Walzer, Mathias, Gatto, Laurent, Hartler, Jürgen, Thallinger, Gerhard G., Salek, Reza M., Steinbeck, Christoph, Neuhauser, Nadin, Cox, Jürgen, Neumann, Steffen, Fan, Jun, Reisinger, Florian, Xu, Qing-Wei, del Toro, Noemi, Pérez-Riverol, Yasset, Ghali, Fawaz, Bandeira, Nuno, Xenarios, Ioannis, Kohlbacher, Oliver, Vizcaíno, Juan Antonio, Hermjakob, Henning
Published in Molecular & cellular proteomics (01.10.2014)
Published in Molecular & cellular proteomics (01.10.2014)
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Journal Article
guide to the Proteomics Identifications Database proteomics data repository
Vizcaíno, Juan Antonio, Côté, Richard, Reisinger, Florian, Foster, Joseph M, Mueller, Michael, Rameseder, Jonathan, Hermjakob, Henning, Martens, Lennart
Published in Proteomics (Weinheim) (01.09.2009)
Published in Proteomics (Weinheim) (01.09.2009)
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Journal Article
The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results
Jones, Andrew R., Eisenacher, Martin, Mayer, Gerhard, Kohlbacher, Oliver, Siepen, Jennifer, Hubbard, Simon J., Selley, Julian N., Searle, Brian C., Shofstahl, James, Seymour, Sean L., Julian, Randall, Binz, Pierre-Alain, Deutsch, Eric W., Hermjakob, Henning, Reisinger, Florian, Griss, Johannes, Vizcaíno, Juan Antonio, Chambers, Matthew, Pizarro, Angel, Creasy, David
Published in Molecular & cellular proteomics (01.07.2012)
Published in Molecular & cellular proteomics (01.07.2012)
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Journal Article
Response to Comment on “Specific and nonhepatotoxic degradation of nuclear hepatitis B virus cccDNA”
Xia, Yuchen, Lucifora, Julie, Reisinger, Florian, Heikenwalder, Mathias, Protzer, Ulrike
Published in Science (American Association for the Advancement of Science) (13.06.2014)
Published in Science (American Association for the Advancement of Science) (13.06.2014)
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Journal Article
PRIDE Inspector: a tool to visualize and validate MS proteomics data
Wang, Rui, Fabregat, Antonio, Ríos, Daniel, Ovelleiro, David, Foster, Joseph M, Côté, Richard G, Griss, Johannes, Csordas, Attila, Perez-Riverol, Yasset, Reisinger, Florian, Hermjakob, Henning, Martens, Lennart, Vizcaíno, Juan Antonio
Published in Nature biotechnology (01.02.2012)
Published in Nature biotechnology (01.02.2012)
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Journal Article
RIP3 Inhibits Inflammatory Hepatocarcinogenesis but Promotes Cholestasis by Controlling Caspase-8- and JNK-Dependent Compensatory Cell Proliferation
Vucur, Mihael, Reisinger, Florian, Gautheron, Jérémie, Janssen, Joern, Roderburg, Christoph, Cardenas, David Vargas, Kreggenwinkel, Karina, Koppe, Christiane, Hammerich, Linda, Hakem, Razq, Unger, Kristian, Weber, Achim, Gassler, Nikolaus, Luedde, Mark, Frey, Norbert, Neumann, Ulf Peter, Tacke, Frank, Trautwein, Christian, Heikenwalder, Mathias, Luedde, Tom
Published in Cell reports (Cambridge) (29.08.2013)
Published in Cell reports (Cambridge) (29.08.2013)
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Journal Article
The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases
Côté, Richard G, Jones, Philip, Martens, Lennart, Kerrien, Samuel, Reisinger, Florian, Lin, Quan, Leinonen, Rasko, Apweiler, Rolf, Hermjakob, Henning
Published in BMC bioinformatics (18.10.2007)
Published in BMC bioinformatics (18.10.2007)
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Journal Article
The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics
Walzer, Mathias, Qi, Da, Mayer, Gerhard, Uszkoreit, Julian, Eisenacher, Martin, Sachsenberg, Timo, Gonzalez-Galarza, Faviel F., Fan, Jun, Bessant, Conrad, Deutsch, Eric W., Reisinger, Florian, Vizcaíno, Juan Antonio, Medina-Aunon, J. Alberto, Albar, Juan Pablo, Kohlbacher, Oliver, Jones, Andrew R.
Published in Molecular & cellular proteomics (01.08.2013)
Published in Molecular & cellular proteomics (01.08.2013)
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