Metagenomics: The Next Culture-Independent Game Changer
Forbes, Jessica D, Knox, Natalie C, Ronholm, Jennifer, Pagotto, Franco, Reimer, Aleisha
Published in Frontiers in microbiology (04.07.2017)
Published in Frontiers in microbiology (04.07.2017)
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Journal Article
Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa
Reimer, Aleisha R, Van Domselaar, Gary, Stroika, Steven, Walker, Matthew, Kent, Heather, Tarr, Cheryl, Talkington, Deborah, Rowe, Lori, Olsen-Rasmussen, Melissa, Frace, Michael, Sammons, Scott, Dahourou, Georges Anicet, Boncy, Jacques, Smith, Anthony M, Mabon, Philip, Petkau, Aaron, Graham, Morag, Gilmour, Matthew W, Gerner-Smidt, Peter
Published in Emerging infectious diseases (01.11.2011)
Published in Emerging infectious diseases (01.11.2011)
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Journal Article
Evaluation of whole-genome sequencing for outbreak detection of Verotoxigenic Escherichia coli O157:H7 from the Canadian perspective
Rumore, Jillian, Tschetter, Lorelee, Kearney, Ashley, Kandar, Rima, McCormick, Rachel, Walker, Matthew, Peterson, Christy-Lynn, Reimer, Aleisha, Nadon, Celine
Published in BMC genomics (04.12.2018)
Published in BMC genomics (04.12.2018)
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Journal Article
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes
Moura, Alexandra, Criscuolo, Alexis, Pouseele, Hannes, Maury, Mylène M, Leclercq, Alexandre, Tarr, Cheryl, Björkman, Jonas T, Dallman, Timothy, Reimer, Aleisha, Enouf, Vincent, Larsonneur, Elise, Carleton, Heather, Bracq-Dieye, Hélène, Katz, Lee S, Jones, Louis, Touchon, Marie, Tourdjman, Mathieu, Walker, Matthew, Stroika, Steven, Cantinelli, Thomas, Chenal-Francisque, Viviane, Kucerova, Zuzana, Rocha, Eduardo P C, Nadon, Celine, Grant, Kathie, Nielsen, Eva M, Pot, Bruno, Gerner-Smidt, Peter, Lecuit, Marc, Brisse, Sylvain
Published in Nature microbiology (10.10.2016)
Published in Nature microbiology (10.10.2016)
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Journal Article
Use of a taxon-specific reference database for accurate metagenomics-based pathogen detection of Listeria monocytogenes in turkey deli meat and spinach
Rumore, Jillian, Walker, Matthew, Pagotto, Franco, Forbes, Jessica D, Peterson, Christy-Lynn, Tyler, Andrea D, Graham, Morag, Van Domselaar, Gary, Nadon, Celine, Reimer, Aleisha, Knox, Natalie
Published in BMC genomics (27.06.2023)
Published in BMC genomics (27.06.2023)
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Journal Article
Sequence Typing Confirms that a Predominant Listeria monocytogenes Clone Caused Human Listeriosis Cases and Outbreaks in Canada from 1988 to 2010
KNABEL, Stephen J, REIMER, Aleisha, VERGHESE, Bindhu, LOK, Mei, ZIEGLER, Jennifer, FARBER, Jeffrey, PAGOTTO, Franco, GRAHAM, Morag, NADON, Celine A, GILMOUR, Matthew W
Published in Journal of Clinical Microbiology (01.05.2012)
Published in Journal of Clinical Microbiology (01.05.2012)
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Journal Article
Physician perspectives of Helicobacter pylori diagnostic and treatment practices in Canada: results of a Canadian survey
Cadogan, Kianna, Shaffer, Seth R, Singer, Alexander, Reimer, Aleisha, Knox, Natalie, Rumore, Jillian, Christianson, Sara, Alexander, David C, Forbes, Jessica D, Bernstein, Charles N
Published in BMC gastroenterology (17.06.2024)
Published in BMC gastroenterology (17.06.2024)
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Journal Article
The Validation and Implications of Using Whole Genome Sequencing as a Replacement for Traditional Serotyping for a National Salmonella Reference Laboratory
Yachison, Chris A, Yoshida, Catherine, Robertson, James, Nash, John H E, Kruczkiewicz, Peter, Taboada, Eduardo N, Walker, Matthew, Reimer, Aleisha, Christianson, Sara, Nichani, Anil, Nadon, Celine
Published in Frontiers in microbiology (09.06.2017)
Published in Frontiers in microbiology (09.06.2017)
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Journal Article
Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population
Clark, Clifford G, Berry, Chrystal, Walker, Matthew, Petkau, Aaron, Barker, Dillon O R, Guan, Cai, Reimer, Aleisha, Taboada, Eduardo N
Published in BMC genomics (03.12.2016)
Published in BMC genomics (03.12.2016)
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Journal Article
Neptune: a bioinformatics tool for rapid discovery of genomic variation in bacterial populations
Marinier, Eric, Zaheer, Rahat, Berry, Chrystal, Weedmark, Kelly A, Domaratzki, Michael, Mabon, Philip, Knox, Natalie C, Reimer, Aleisha R, Graham, Morag R, Chui, Linda, Patterson-Fortin, Laura, Zhang, Jian, Pagotto, Franco, Farber, Jeff, Mahony, Jim, Seyer, Karine, Bekal, Sadjia, Tremblay, Cécile, Isaac-Renton, Judy, Prystajecky, Natalie, Chen, Jessica, Slade, Peter, Van Domselaar, Gary
Published in Nucleic acids research (13.10.2017)
Published in Nucleic acids research (13.10.2017)
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Journal Article
Clinical Metagenomics Is Increasingly Accurate and Affordable to Detect Enteric Bacterial Pathogens in Stool
Peterson, Christy-Lynn, Alexander, David, Chen, Julie Chih-Yu, Adam, Heather, Walker, Matthew, Ali, Jennifer, Forbes, Jessica, Taboada, Eduardo, Barker, Dillon O R, Graham, Morag, Knox, Natalie, Reimer, Aleisha R
Published in Microorganisms (Basel) (15.02.2022)
Published in Microorganisms (Basel) (15.02.2022)
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Journal Article
Drug-resistance mechanisms in Vibrio cholerae O1 outbreak strain, Haiti, 2010
Sjölund-Karlsson, Maria, Reimer, Aleisha, Folster, Jason P, Walker, Matthew, Dahourou, Georges Anicet, Batra, Dhwani Govil, Martin, Irene, Joyce, Kevin, Parsons, Michele B, Boncy, Jacques, Whichard, Jean M, Gilmour, Matthew W
Published in Emerging infectious diseases (01.11.2011)
Published in Emerging infectious diseases (01.11.2011)
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Journal Article
Corynebacterium macginleyi Conjunctivitis in Canada
ALSUWAIDI, Ahmed R, WIEBE, Deborah, BURDZ, Tamara, NG, Betty, REIMER, Aleisha, SINGH, Cathleen, BERNARD, Kathryn
Published in Journal of Clinical Microbiology (01.10.2010)
Published in Journal of Clinical Microbiology (01.10.2010)
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Journal Article
Gardnerella vaginalis Bacteremia in a Previously Healthy Man: Case Report and Characterization of the Isolate
Lagacé-Wiens, Philippe R.S, Ng, Betty, Reimer, Aleisha, Burdz, Tamara, Wiebe, Deborah, Bernard, Kathryn
Published in Journal of Clinical Microbiology (01.02.2008)
Published in Journal of Clinical Microbiology (01.02.2008)
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Journal Article
A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis
Emond-Rheault, Jean-Guillaume, Jeukens, Julie, Freschi, Luca, Kukavica-Ibrulj, Irena, Boyle, Brian, Dupont, Marie-Josée, Colavecchio, Anna, Barrere, Virginie, Cadieux, Brigitte, Arya, Gitanjali, Bekal, Sadjia, Berry, Chrystal, Burnett, Elton, Cavestri, Camille, Chapin, Travis K, Crouse, Alanna, Daigle, France, Danyluk, Michelle D, Delaquis, Pascal, Dewar, Ken, Doualla-Bell, Florence, Fliss, Ismail, Fong, Karen, Fournier, Eric, Franz, Eelco, Garduno, Rafael, Gill, Alexander, Gruenheid, Samantha, Harris, Linda, Huang, Carol B, Huang, Hongsheng, Johnson, Roger, Joly, Yann, Kerhoas, Maud, Kong, Nguyet, Lapointe, Gisèle, Larivière, Line, Loignon, Stéphanie, Malo, Danielle, Moineau, Sylvain, Mottawea, Walid, Mukhopadhyay, Kakali, Nadon, Céline, Nash, John, Ngueng Feze, Ida, Ogunremi, Dele, Perets, Ann, Pilar, Ana V, Reimer, Aleisha R, Robertson, James, Rohde, John, Sanderson, Kenneth E, Song, Lingqiao, Stephan, Roger, Tamber, Sandeep, Thomassin, Paul, Tremblay, Denise, Usongo, Valentine, Vincent, Caroline, Wang, Siyun, Weadge, Joel T, Wiedmann, Martin, Wijnands, Lucas, Wilson, Emily D, Wittum, Thomas, Yoshida, Catherine, Youfsi, Khadija, Zhu, Lei, Weimer, Bart C, Goodridge, Lawrence, Levesque, Roger C
Published in Frontiers in microbiology (02.06.2017)
Published in Frontiers in microbiology (02.06.2017)
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Journal Article
Tolerance of Listeria monocytogenes to Quaternary Ammonium Sanitizers Is Mediated by a Novel Efflux Pump Encoded by emrE
Kovacevic, Jovana, Ziegler, Jennifer, Wałecka-Zacharska, Ewa, Reimer, Aleisha, Kitts, David D, Gilmour, Matthew W
Published in Applied and environmental microbiology (01.02.2016)
Published in Applied and environmental microbiology (01.02.2016)
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Journal Article
SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology
Petkau, Aaron, Mabon, Philip, Sieffert, Cameron, Knox, Natalie C, Cabral, Jennifer, Iskander, Mariam, Iskander, Mark, Weedmark, Kelly, Zaheer, Rahat, Katz, Lee S, Nadon, Celine, Reimer, Aleisha, Taboada, Eduardo, Beiko, Robert G, Hsiao, William, Brinkman, Fiona, Graham, Morag, Van Domselaar, Gary
Published in Microbial genomics (30.06.2017)
Published in Microbial genomics (30.06.2017)
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Journal Article
Economic evaluation of whole genome sequencing for pathogen identification and surveillance - results of case studies in Europe and the Americas 2016 to 2019
Alleweldt, Frank, Kara, Şenda, Best, Kris, Aarestrup, Frank M, Beer, Martin, Bestebroer, Theo M, Campos, Josefina, Casadei, Gabriele, Chinen, Isabel, Van Domselaar, Gary, Dominguez, Catherine, Everett, Helen E, Fouchier, Ron Am, Grant, Kathie, Green, Jonathan, Höper, Dirk, Johnston, Jonathan, Koopmans, Marion Pg, Oude Munnink, Bas B, Myers, Robert, Nadon, Celine, Patel, Ami, Pohlmann, Anne, Pongolini, Stefano, Reimer, Aleisha, Thiessen, Shane, Wylezich, Claudia
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (04.03.2021)
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (04.03.2021)
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