Large library docking for novel SARS‐CoV‐2 main protease non‐covalent and covalent inhibitors
Fink, Elissa A., Bardine, Conner, Gahbauer, Stefan, Singh, Isha, Detomasi, Tyler C., White, Kris, Gu, Shuo, Wan, Xiaobo, Chen, Jun, Ary, Beatrice, Glenn, Isabella, O'Connell, Joseph, O'Donnell, Henry, Fajtová, Pavla, Lyu, Jiankun, Vigneron, Seth, Young, Nicholas J., Kondratov, Ivan S., Alisoltani, Arghavan, Simons, Lacy M., Lorenzo‐Redondo, Ramon, Ozer, Egon A., Hultquist, Judd F., O'Donoghue, Anthony J., Moroz, Yurii S., Taunton, Jack, Renslo, Adam R., Irwin, John J., García‐Sastre, Adolfo, Shoichet, Brian K., Craik, Charles S.
Published in Protein science (01.08.2023)
Published in Protein science (01.08.2023)
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De novo emergence of SARS‐CoV‐2 spike mutations in immunosuppressed patients
Simons, Lacy M., Ozer, Egon A., Gambut, Stephanie, Dean, Taylor J., Zhang, Li, Bhimalli, Pavan, Schneider, Jeffrey R., Mamede, João I., Ison, Michael G., Karmali, Reem, Gordon, Leo I., Lorenzo‐Redondo, Ramon, Hultquist, Judd F.
Published in Transplant infectious disease (01.12.2022)
Published in Transplant infectious disease (01.12.2022)
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Localization of infection in neonatal rhesus macaques after oral viral challenge
Taylor, Roslyn A, McRaven, Michael D, Carias, Ann M, Anderson, Meegan R, Matias, Edgar, Araínga, Mariluz, Allen, Edward J, Rogers, Kenneth A, Gupta, Sandeep, Kulkarni, Viraj, Lakhashe, Samir, Lorenzo-Redondo, Ramon, Thomas, Yanique, Strickland, Amanda, Villinger, Francois J, Ruprecht, Ruth M, Hope, Thomas J
Published in PLoS pathogens (01.11.2021)
Published in PLoS pathogens (01.11.2021)
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Persistent HIV-1 replication maintains the tissue reservoir during therapy
Lorenzo-Redondo, Ramon, Fryer, Helen R., Bedford, Trevor, Kim, Eun-Young, Archer, John, Kosakovsky Pond, Sergei L., Chung, Yoon-Seok, Penugonda, Sudhir, Chipman, Jeffrey G., Fletcher, Courtney V., Schacker, Timothy W., Malim, Michael H., Rambaut, Andrew, Haase, Ashley T., McLean, Angela R., Wolinsky, Steven M.
Published in Nature (London) (04.02.2016)
Published in Nature (London) (04.02.2016)
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Deviations in RSV epidemiological patterns and population structures in the United States following the COVID-19 pandemic
Rios-Guzman, Estefany, Simons, Lacy M., Dean, Taylor J., Agnes, Francesca, Pawlowski, Anna, Alisoltanidehkordi, Arghavan, Nam, Hannah H., Ison, Michael G., Ozer, Egon A., Lorenzo-Redondo, Ramon, Hultquist, Judd F.
Published in Nature communications (20.04.2024)
Published in Nature communications (20.04.2024)
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Permanent control of HIV-1 pathogenesis in exceptional elite controllers: a model of spontaneous cure
Casado, Concepcion, Galvez, Cristina, Pernas, Maria, Tarancon-Diez, Laura, Rodriguez, Carmen, Sanchez-Merino, Víctor, Vera, Mar, Olivares, Isabel, De Pablo-Bernal, Rebeca, Merino-Mansilla, Alberto, Del Romero, Jorge, Lorenzo-Redondo, Ramon, Ruiz-Mateos, Ezequiel, Salgado, María, Martinez-Picado, Javier, Lopez-Galindez, Cecilio
Published in Scientific reports (05.02.2020)
Published in Scientific reports (05.02.2020)
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Publisher Correction: TGF-β blockade drives a transitional effector phenotype in T cells reversing SIV latency and decreasing SIV reservoirs in vivo
Kim, Jinhee, Bose, Deepanwita, Araínga, Mariluz, Haque, Muhammad R., Fennessey, Christine M., Caddell, Rachel A., Thomas, Yanique, Ferrell, Douglas E., Ali, Syed, Grody, Emanuelle, Goyal, Yogesh, Cicala, Claudia, Arthos, James, Keele, Brandon F., Vaccari, Monica, Lorenzo-Redondo, Ramon, Hope, Thomas J., Villinger, Francois, Martinelli, Elena
Published in Nature communications (10.10.2024)
Published in Nature communications (10.10.2024)
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Challenges and Opportunities for Global Genomic Surveillance Strategies in the COVID-19 Era
Ling-Hu, Ted, Rios-Guzman, Estefany, Lorenzo-Redondo, Ramon, Ozer, Egon A, Hultquist, Judd F
Published in Viruses (16.11.2022)
Published in Viruses (16.11.2022)
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Genomic characterization of SARS-CoV-2 in Guinea, West Africa
Sow, Mamadou Saliou, Togo, Josue, Simons, Lacy M, Diallo, Souleymane Taran, Magassouba, Mohamed Lamine, Keita, Mamadou Bhoye, Somboro, Anou Moise, Coulibaly, Youssouf, Ozer, Egon A, Hultquist, Judd F, Murphy, Robert Leo, Maiga, Almoustapha Issiaka, Maiga, Mamoudou, Lorenzo-Redondo, Ramon
Published in PloS one (06.03.2024)
Published in PloS one (06.03.2024)
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TGF-β blockade drives a transitional effector phenotype in T cells reversing SIV latency and decreasing SIV reservoirs in vivo
Kim, Jinhee, Bose, Deepanwita, Araínga, Mariluz, Haque, Muhammad R., Fennessey, Christine M., Caddell, Rachel A., Thomas, Yanique, Ferrell, Douglas E., Ali, Syed, Grody, Emanuelle, Goyal, Yogesh, Cicala, Claudia, Arthos, James, Keele, Brandon F., Vaccari, Monica, Lorenzo-Redondo, Ramon, Hope, Thomas J., Villinger, Francois, Martinelli, Elena
Published in Nature communications (14.02.2024)
Published in Nature communications (14.02.2024)
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Multiple expansions of globally uncommon SARS-CoV-2 lineages in Nigeria
Ozer, Egon A., Simons, Lacy M., Adewumi, Olubusuyi M., Fowotade, Adeola A., Omoruyi, Ewean C., Adeniji, Johnson A., Olayinka, Oluseyi A., Dean, Taylor J., Zayas, Janet, Bhimalli, Pavan P., Ash, Michelle K., Maiga, Almoustapha I., Somboro, Anou M., Maiga, Mamoudou, Godzik, Adam, Schneider, Jeffrey R., Mamede, João I., Taiwo, Babafemi O., Hultquist, Judd F., Lorenzo-Redondo, Ramon
Published in Nature communications (03.02.2022)
Published in Nature communications (03.02.2022)
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Rapid and Sensitive Detection of Antigen from SARS-CoV‑2 Variants of Concern by a Multivalent Minibinder-Functionalized Nanomechanical Sensor
Agarwal, Dilip Kumar, Hunt, Andrew C., Shekhawat, Gajendra S., Carter, Lauren, Chan, Sidney, Wu, Kejia, Cao, Longxing, Baker, David, Lorenzo-Redondo, Ramon, Ozer, Egon A., Simons, Lacy M., Hultquist, Judd F., Jewett, Michael C., Dravid, Vinayak P.
Published in Analytical chemistry (Washington) (14.06.2022)
Published in Analytical chemistry (Washington) (14.06.2022)
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PET/CT targeted tissue sampling reveals intravenously administered HGN194 IgG1 affects HIV distribution after rectal exposure
Taylor, Roslyn, Xiao, Sixia, Carias, Ann M, McRaven, Michael D, Thakkar, Divya N, Araínga, Mariluz, Lorenzo Redondo, Ramon, Allen, Edward J, Rogers, Kenneth A, Kumarapperuma, Sidath C, Gong, Siqi, Anderson, Meegan R, Thomas, Yanique, Madden, Patrick J, Corti, Davide, Cameroni, Elisabetta, Lanzavecchia, Antonio, Goins, Beth, Fox, Peter, Villinger, Francois J, Ruprecht, Ruth M, Hope, Thomas J
Published in AIDS research and human retroviruses (01.11.2024)
Published in AIDS research and human retroviruses (01.11.2024)
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Transcriptome-wide changes in gene expression, splicing, and lncRNAs in response to a live attenuated dengue virus vaccine
Kim, Eun-Young, Che, Yan, Dean, Hansi J., Lorenzo-Redondo, Ramon, Stewart, Michael, Keller, Caroline K., Whorf, Daniel, Mills, Dawson, Dulin, Nikita N., Kim, Tiffany, Votoupal, Megan, Walter, Miriam, Fernandez-Sesma, Ana, Kim, Heejin, Wolinsky, Steven M.
Published in Cell reports (Cambridge) (08.02.2022)
Published in Cell reports (Cambridge) (08.02.2022)
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Resurgence of SARS-CoV-2 Delta after Omicron variant superinfection in an immunocompromised pediatric patient
Alisoltani, Arghavan, Simons, Lacy M, Agnes, Maria Francesca Reyes, Heald-Sargent, Taylor A, Muller, William J, Kociolek, Larry K, Hultquist, Judd F, Lorenzo-Redondo, Ramon, Ozer, Egon A
Published in Virology journal (27.10.2023)
Published in Virology journal (27.10.2023)
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Human APOBEC3 induced mutation of human immunodeficiency virus type-1 contributes to adaptation and evolution in natural infection
Kim, Eun-Young, Lorenzo-Redondo, Ramon, Little, Susan J, Chung, Yoon-Seok, Phalora, Prabhjeet K, Maljkovic Berry, Irina, Archer, John, Penugonda, Sudhir, Fischer, Will, Richman, Douglas D, Bhattacharya, Tanmoy, Malim, Michael H, Wolinsky, Steven M
Published in PLoS pathogens (01.07.2014)
Published in PLoS pathogens (01.07.2014)
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ViralVar: A Web Tool for Multilevel Visualization of SARS-CoV-2 Genomes
Alisoltani, Arghavan, Jaroszewski, Lukasz, Godzik, Adam, Iranzadeh, Arash, Simons, Lacy M, Dean, Taylor J, Lorenzo-Redondo, Ramon, Hultquist, Judd F, Ozer, Egon A
Published in Viruses (01.12.2022)
Published in Viruses (01.12.2022)
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A clade of SARS-CoV-2 viruses associated with lower viral loads in patient upper airways
Lorenzo-Redondo, Ramon, Nam, Hannah H., Roberts, Scott C., Simons, Lacy M., Jennings, Lawrence J., Qi, Chao, Achenbach, Chad J., Hauser, Alan R., Ison, Michael G., Hultquist, Judd F., Ozer, Egon A.
Published in EBioMedicine (01.12.2020)
Published in EBioMedicine (01.12.2020)
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Has Omicron Changed the Evolution of the Pandemic?
Lundberg, Alexander L, Lorenzo-Redondo, Ramon, Ozer, Egon A, Hawkins, Claudia A, Hultquist, Judd F, Welch, Sarah B, Prasad, P V Vara, Oehmke, James F, Achenbach, Chad J, Murphy, Robert L, White, Janine I, Havey, Robert J, Post, Lori Ann
Published in JMIR public health and surveillance (31.01.2022)
Published in JMIR public health and surveillance (31.01.2022)
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Effective Prophylaxis of COVID-19 in Rhesus Macaques Using a Combination of Two Parenterally-Administered SARS-CoV-2 Neutralizing Antibodies
Beddingfield, Brandon J., Maness, Nicholas J., Fears, Alyssa C., Rappaport, Jay, Aye, Pyone Pyone, Russell-Lodrigue, Kasi, Doyle-Meyers, Lara A., Blair, Robert V., Carias, Ann M., Madden, Patrick J., Redondo, Ramon Lorenzo, Gao, Hongmei, Montefiori, David, Hope, Thomas J., Roy, Chad J.
Published in Frontiers in cellular and infection microbiology (18.11.2021)
Published in Frontiers in cellular and infection microbiology (18.11.2021)
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