Simultaneous trimodal single-cell measurement of transcripts, epitopes, and chromatin accessibility using TEA-seq
Swanson, Elliott, Lord, Cara, Reading, Julian, Heubeck, Alexander T, Genge, Palak C, Thomson, Zachary, Weiss, Morgan DA, Li, Xiao-Jun, Savage, Adam K, Green, Richard R, Torgerson, Troy R, Bumol, Thomas F, Graybuck, Lucas T, Skene, Peter J
Published in eLife (09.04.2021)
Published in eLife (09.04.2021)
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BarWare: efficient software tools for barcoded single-cell genomics
Swanson, Elliott, Reading, Julian, Graybuck, Lucas T, Skene, Peter J
Published in BMC bioinformatics (27.03.2022)
Published in BMC bioinformatics (27.03.2022)
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MOCHA’s advanced statistical modeling of scATAC-seq data enables functional genomic inference in large human cohorts
Rachid Zaim, Samir, Pebworth, Mark-Phillip, McGrath, Imran, Okada, Lauren, Weiss, Morgan, Reading, Julian, Czartoski, Julie L., Torgerson, Troy R., McElrath, M. Juliana, Bumol, Thomas F., Skene, Peter J., Li, Xiao-jun
Published in Nature communications (09.08.2024)
Published in Nature communications (09.08.2024)
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A comprehensive platform for analyzing longitudinal multi-omics data
Vasaikar, Suhas V., Savage, Adam K., Gong, Qiuyu, Swanson, Elliott, Talla, Aarthi, Lord, Cara, Heubeck, Alexander T., Reading, Julian, Graybuck, Lucas T., Meijer, Paul, Torgerson, Troy R., Skene, Peter J., Bumol, Thomas F., Li, Xiao-jun
Published in Nature communications (27.03.2023)
Published in Nature communications (27.03.2023)
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Optimized workflow for human PBMC multiomic immunosurveillance studies
Genge, Palak C., Roll, Charles R., Heubeck, Alexander T., Swanson, Elliott, Kondza, Nina, Lord, Cara, Weiss, Morgan, Hernandez, Veronica, Phalen, Cole, Thomson, Zachary, Torgerson, Troy R., Skene, Peter J., Bumol, Thomas F., Reading, Julian
Published in STAR protocols (17.12.2021)
Published in STAR protocols (17.12.2021)
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Development of a T-cell activation panel using image cytometry in rheumatoid arthritis patient samples
Chan, Leo, Stuckey, Tyanna, Pierce, Mackenzie, Musgrove, Blessing, Hernandez, Veronica, Lin, Bo, Rapson, Sean, McDonald, James, Reading, Julian
Published in The Journal of immunology (1950) (01.05.2024)
Published in The Journal of immunology (1950) (01.05.2024)
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Cross‐platform immunophenotyping of human peripheral blood mononuclear cells with four high‐dimensional flow cytometry panels
Heubeck, Alexander, Savage, Adam, Henderson, Katherine, Roll, Charles, Hernandez, Veronica, Torgerson, Troy, Bumol, Thomas, Reading, Julian
Published in Cytometry. Part A (01.06.2023)
Published in Cytometry. Part A (01.06.2023)
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Development of a High-Throughput Image Cytometric Screening Method as a Research Tool for Immunophenotypic Characterization of Patient Samples from Clinical Studies
Chan, Leo, Nitta, Carolina, Patel, Samir, McDonald, James, Mohammed, Hamza, Hem, Sopaul, Pierce, Mackenzie, Parthasarathy, Vaish, Hernandez, Veronica, Stuckey, Tyanna, Lin, Bo, Reading, Julian
Published in The Journal of immunology (1950) (01.05.2024)
Published in The Journal of immunology (1950) (01.05.2024)
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Development of a high-throughput image cytometric screening method as a research tool for immunophenotypic characterization of patient samples from clinical studies
Patel, Samir, McDonald, James I, Mohammed, Hamza, Parthasarathy, Vaishnavi, Hernandez, Veronica, Stuckey, Tyanna, Lin, Allen H, Gundimeda, Srinivas Koushik, Lin, Bo, Reading, Julian, Chan, Leo Li-Ying
Published in Journal of immunological methods (01.01.2024)
Published in Journal of immunological methods (01.01.2024)
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Trimodal single-cell profiling reveals a novel pediatric CD8αα+ T cell subset and broad age-related molecular reprogramming across the T cell compartment
Thomson, Zachary, He, Ziyuan, Swanson, Elliott, Henderson, Katherine, Phalen, Cole, Zaim, Samir Rachid, Pebworth, Mark-Phillip, Okada, Lauren Y., Heubeck, Alexander T., Roll, Charles R., Hernandez, Veronica, Weiss, Morgan, Genge, Palak C., Reading, Julian, Giles, Josephine R., Manne, Sasikanth, Dougherty, Jeanette, Jasen, C. J., Greenplate, Allison R., Becker, Lynne A., Graybuck, Lucas T., Vasaikar, Suhas V., Szeto, Gregory L., Savage, Adam K., Speake, Cate, Buckner, Jane H., Li, Xiao-jun, Bumol, Thomas F., Wherry, E.John, Torgerson, Troy R., Vella, Laura A., Henrickson, Sarah E., Skene, Peter J., Gustafson, Claire E.
Published in Nature immunology (01.11.2023)
Published in Nature immunology (01.11.2023)
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Tri-modal single cell (TEA-seq) profiling reveals a novel, epigenetically distinct T cell subset in children and global molecular reprogramming across age
Gustafson, Claire E, Thomson, Zachary, He, Ziyuan, Swanson, Elliot, Henderson, Katherine, Pebworth, Mark-Phillip, Okada, Lauren, Heubeck, Alexander, Roll, Charles, Hernandez, Veronica, Weiss, Morgan, Genge, Palak, Reading, Julian, Giles, Josephine, Manne, Sasikanth, Dougherty, Jeanette, Jasen, CJ, Greenplate, Allison, Becker, Lynne, Graybuck, Lucas, Vasaikar, Suhas, Szeto, Gregory Lee, Savage, Adam, Speake, Cate, Buckner, Jane H, Li, Xiaojun, Bumol, Thomas, Wherry, E. John, Torgerson, Troy, Vella, Laura, Henrickson, Sarah E., Skene, Peter
Published in The Journal of immunology (1950) (01.05.2023)
Published in The Journal of immunology (1950) (01.05.2023)
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Journal Article
Author Correction: Trimodal single-cell profiling reveals a novel pediatric CD8αα+ T cell subset and broad age-related molecular reprogramming across the T cell compartment
Thomson, Zachary, He, Ziyuan, Swanson, Elliott, Henderson, Katherine, Phalen, Cole, Zaim, Samir Rachid, Pebworth, Mark-Phillip, Okada, Lauren Y., Heubeck, Alexander T., Roll, Charles R., Hernandez, Veronica, Weiss, Morgan, Genge, Palak C., Reading, Julian, Giles, Josephine R., Manne, Sasikanth, Dougherty, Jeanette, Jasen, C. J., Greenplate, Allison R., Becker, Lynne A., Graybuck, Lucas T., Vasaikar, Suhas V., Szeto, Gregory L., Savage, Adam K., Speake, Cate, Buckner, Jane H., Li, Xiao-jun, Bumol, Thomas F., Wherry, E.John, Torgerson, Troy R., Vella, Laura A., Henrickson, Sarah E., Skene, Peter J., Gustafson, Claire E.
Published in Nature immunology (01.03.2024)
Published in Nature immunology (01.03.2024)
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Amine compounds having anti-inflammatory antifungal antiparasitic and anticancer activity
LU MING, LI RUI, VON BORSTEL REID W, WOLPE STEPHEN, SIMPSON DAVID M, READING JULIAN, ZERBY DENNIS BRYAN, AMAN NUREDDIN
Year of Publication 19.01.2021
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Year of Publication 19.01.2021
Patent
AMINE COMPOUNDS HAVING ANTI-INFLAMMATORY, ANTIFUNGAL, ANTIPARASITIC, AND ANTICANCER ACTIVITY
LU MING, LI RUI, VON BORSTEL REID W, WOLPE STEPHEN, SIMPSON DAVID M, READING JULIAN, ZERBY DENNIS BRYAN, AMAN NUREDDIN
Year of Publication 06.10.2015
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Year of Publication 06.10.2015
Patent
Systemic inflammation and lymphocyte activation precede rheumatoid arthritis
He, Ziyuan, Glass, Marla C, Venkatesan, Pravina, Feser, Marie L, Lazaro, Leander, Okada, Lauren Y, Tran, Nhung T T, He, Yudong D, Rachid Zaim, Samir, Bennett, Christy E, Ravisankar, Padmapriyadarshini, Dornisch, Elisabeth M, Arishi, Najeeb A, Asamoah, Ashley G, Barzideh, Saman, Becker, Lynne A, Bemis, Elizabeth A, Buckner, Jane H, Collora, Christopher E, Criley, Megan A L, Demoruelle, M Kristen, Fleischer, Chelsie L, Garber, Jessica, Genge, Palak C, Gong, Qiuyu, Graybuck, Lucas T, Gustafson, Claire E, Hattel, Brian C, Hernandez, Veronica, Heubeck, Alexander T, Kawelo, Erin K, Krishnan, Upaasana, Kuan, Emma L, Kuhn, Kristine A, LaFrance, Christian M, Lee, Kevin J, Li, Ruoxin, Lord, Cara, Mettey, Regina R, Moss, LauraKay, Musgrove, Blessing, Nguyen, Kathryn, Ochoa, Andrea, Parthasarathy, Vaishnavi, Pebworth, Mark-Phillip, Pedrick, Chong, Peng, Tao, Phalen, Cole G, Reading, Julian, Roll, Charles R, Seifert, Jennifer A, Siedschlag, Marguerite D, Speake, Cate, Striebich, Christopher C, Stuckey, Tyanna J, Swanson, Elliott G, Takada, Hideto, Thai, Tylor, Thomson, Zachary J, Trieu, Nguyen, Tsaltskan, Vlad, Wang, Wei, Weiss, Morgan D A, Westermann, Amy, Zhang, Fan, Boyle, David L, Goldrath, Ananda W, Bumol, Thomas F, Li, Xiao-Jun, Holers, V Michael, Skene, Peter J, Savage, Adam K, Firestein, Gary S, Deane, Kevin D, Torgerson, Troy R, Gillespie, Mark A
Published in bioRxiv (12.11.2024)
Published in bioRxiv (12.11.2024)
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Longitudinal Multi-omic Immune Profiling Reveals Age-Related Immune Cell Dynamics in Healthy Adults
Gong, Qiuyu, Sharma, Mehul, Kuan, Emma L, Glass, Marla C, Chander, Aishwarya, Singh, Mansi, Graybuck, Lucas T, Thomson, Zachary J, LaFrance, Christian M, Zaim, Samir Rachid, Peng, Tao, Okada, Lauren Y, Genge, Palak C, Henderson, Katherine E, Dornisch, Elisabeth M, Layton, Erik D, Wittig, Peter J, Heubeck, Alexander T, Mukuka, Nelson M, Reading, Julian, Roll, Charles R, Hernandez, Veronica, Parthasarathy, Vaishnavi, Stuckey, Tyanna J, Musgrove, Blessing, Swanson, Elliott, Lord, Cara, Weiss, Morgan D A, Phalen, Cole G, Mettey, Regina R, Lee, Kevin J, Johanneson, John B, Kawelo, Erin K, Garber, Jessica, Krishnan, Upaasana, Smithmyer, Megan, Wherry, E John, Vella, Laura, Henrickson, Sarah E, Kopp, Mackenzie S, Savage, Adam K, Becker, Lynne A, Meijer, Paul, Coffey, Ernest M, Goronzy, Jorg J, Speake, Cate, Bumol, Thomas F, Goldrath, Ananda W, Torgerson, Troy R, Li, Xiao-Jun, Skene, Peter J, Buckner, Jane H, Gustafson, Claire E
Published in bioRxiv (14.09.2024)
Published in bioRxiv (14.09.2024)
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Journal Article
Longitudinal immune dynamics of mild COVID-19 define signatures of recovery and persistence
Talla, Aarthi, Vasaikar, Suhas V, Lemos, Maria P, Moodie, Zoe, Lee Pebworth, Mark-Phillip, Henderson, Kathy E, Cohen, Kristen W, Czartoski, Julie L, Lai, Lilin, Suthar, Mehul S, Heubeck, Alexander T, Genge, Palak C, Roll, Charles R, Weiss, Morgan, Reading, Julian, Kondza, Nina, MacMillan, Hugh, Fong, Olivia C, Thomson, Zachary James, Graybuck, Lucas T, Okada, Lauren Y, Newell, Evan W, Coffey, Ernest M, Meijer, Paul, Becker, Lynne A, De Rosa, Stephen C, Skene, Peter J, Torgerson, Troy R, Li, Xiao-Jun, Szeto, Gregory Lee, McElrath, M Juliana, Bumol, Thomas F
Published in bioRxiv (19.08.2021)
Published in bioRxiv (19.08.2021)
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