Novel multidrug-resistant sublineages of Staphylococcus aureus clonal complex 22 discovered in India
Abrudan, Monica I, Shamanna, Varun, Prasanna, Akshatha, Underwood, Anthony, Argimón, Silvia, Nagaraj, Geetha, Di Gregorio, Sabrina, Govindan, Vandana, Vasanth, Ashwini, Dharmavaram, Sravani, Kekre, Mihir, Aanensen, David M, Ravikumar, K L
Published in mSphere (24.10.2023)
Published in mSphere (24.10.2023)
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Review of virulence factors of enterococcus: An emerging nosocomial pathogen
Giridhara Upadhyaya, P. M, Ravikumar, K. L, Umapathy, B. L
Published in Indian journal of medical microbiology (01.10.2009)
Published in Indian journal of medical microbiology (01.10.2009)
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Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study
Lo, Stephanie W, Gladstone, Rebecca A, van Tonder, Andries J, Lees, John A, du Plessis, Mignon, Benisty, Rachel, Givon-Lavi, Noga, Hawkins, Paulina A, Cornick, Jennifer E, Kwambana-Adams, Brenda, Law, Pierra Y, Ho, Pak Leung, Antonio, Martin, Everett, Dean B, Dagan, Ron, von Gottberg, Anne, Klugman, Keith P, McGee, Lesley, Breiman, Robert F, Bentley, Stephen D, Brooks, Abdullah W, Corso, Alejandra, Davydov, Alexander, Maguire, Alison, Pollard, Andrew, Kiran, Anmol, Skoczynska, Anna, Moiane, Benild, Beall, Bernard, Sigauque, Betuel, Aanensen, David, Lehmann, Deborah, Faccone, Diego, Foster-Nyarko, Ebenezer, Bojang, Ebrima, Egorova, Ekaterina, Voropaeva, Elena, Sampane-Donkor, Eric, Sadowy, Ewa, Bigogo, Godfrey, Mucavele, Helio, Belabbès, Houria, Diawara, Idrissa, Moïsi, Jennifer, Verani, Jennifer, Keenan, Jeremy, Nair Thulasee Bhai, Jyothish N, Ndlangisa, Kedibone M, Zerouali, Khalid, Ravikumar, K L, Titov, Leonid, De Gouveia, Linda, Alaerts, Maaike, Ip, Margaret, de Cunto Brandileone, Maria Cristina, Hasanuzzaman, Md, Paragi, Metka, Nurse-Lucas, Michele, Ali, Mushal, Elmdaghri, Naima, Croucher, Nicholas, Wolter, Nicole, Porat, Nurit, Eser, Özgen Köseoglu, Akpaka, Patrick E, Turner, Paul, Gagetti, Paula, Tientcheu, Peggy-Estelle, Carter, Philip E, Mostowy, Rafal, Kandasamy, Rama, Ford, Rebecca, Henderson, Rebecca, Malaker, Roly, Shakoor, Sadia, Grassi Almeida, Samanta Cristine, Saha, Samir K, Doiphode, Sanjay, Madhi, Shabir A, Devi Sekaran, Shamala, Srifuengfung, Somporn, Obaro, Stephen, Clarke, Stuart C, Nzenze, Susan A, Kastrin, Tamara, Ochoa, Theresa J, Balaji, Veeraraghavan, Hryniewicz, Waleria, Urban, Yulia
Published in The Lancet infectious diseases (01.07.2019)
Published in The Lancet infectious diseases (01.07.2019)
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Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch
Argimón, Silvia, David, Sophia, Underwood, Anthony, Abrudan, Monica, Wheeler, Nicole E, Kekre, Mihir, Abudahab, Khalil, Yeats, Corin A, Goater, Richard, Taylor, Ben, Harste, Harry, Muddyman, Dawn, Feil, Edward J, Brisse, Sylvain, Holt, Kathryn, Donado-Godoy, Pilar, Ravikumar, K L, Okeke, Iruka N, Carlos, Celia, Aanensen, David M
Published in Clinical infectious diseases (01.12.2021)
Published in Clinical infectious diseases (01.12.2021)
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Hospital-based surveillance of invasive pneumococcal disease and pneumonia in South Bangalore, India
Nisarga, Ramalingowda, Premalatha, R., Shivananda, Ravikumar, K. L., Shivappa, U., Gopi, A., Chikkadasarahalli, S. B., Batuwanthudawe, R., Kilgore, P. E., Kim, S. A., Balter, I., Jouve, S., Ye, J., Moscariello, M.
Published in Indian pediatrics (01.03.2015)
Published in Indian pediatrics (01.03.2015)
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Assessment of in vitro colistin susceptibility of carbapenem-resistant clinical Gram-negative bacterial isolates using four commercially available systems & Whole-genome sequencing: A diagnostic accuracy study
Bhatia, Mohit, Shamanna, Varun, Nagaraj, Geetha, Gupta, Pratima, Omar, Balram Ji, Diksha, Rohilla, Ranjana, Ravikumar, K.L.
Published in Diagnostic microbiology and infectious disease (01.03.2024)
Published in Diagnostic microbiology and infectious disease (01.03.2024)
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Estimation of baseline IgG antibody levels to 23 pneumococcal vaccine-type capsular polysaccharides in healthy vaccine naïve Indian adults
Govindan, Vandana, Ganaie, Feroze A., Ramakrishnan, Shincy M., Ravindran, Shilpa, Mavuppadi, Akhila M., Ravikumar, K.L.
Published in Vaccine (12.07.2023)
Published in Vaccine (12.07.2023)
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Molecular characterisation of carbapenem-resistant Klebsiella pneumoniae clinical isolates: preliminary experience from a tertiary care teaching hospital in the Himalayas
Bhatia, Mohit, Shamanna, Varun, Nagaraj, Geetha, Sravani, Dharmavaram, Gupta, Pratima, Omar, Balram Ji, Chakraborty, Deepika, Ravikumar, K L
Published in Transactions of the Royal Society of Tropical Medicine and Hygiene (06.07.2022)
Published in Transactions of the Royal Society of Tropical Medicine and Hygiene (06.07.2022)
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High-Resolution Genomic Profiling of Carbapenem-Resistant Klebsiella pneumoniae Isolates: A Multicentric Retrospective Indian Study
Nagaraj, Geetha, Shamanna, Varun, Govindan, Vandana, Rose, Steffimole, Sravani, D, Akshata, K P, Shincy, M R, Venkatesha, V T, Abrudan, Monica, Argimón, Silvia, Kekre, Mihir, Underwood, Anthony, Aanensen, David M, Ravikumar, K L
Published in Clinical infectious diseases (01.12.2021)
Published in Clinical infectious diseases (01.12.2021)
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Clones and Clusters of Antimicrobial-Resistant Klebsiella From Southwestern Nigeria
Afolayan, Ayorinde O, Oaikhena, Anderson O, Aboderin, Aaron O, Olabisi, Olatunde F, Amupitan, Adewale A, Abiri, Oyekola V, Ogunleye, Veronica O, Odih, Erkison Ewomazino, Adeyemo, Abolaji T, Adeyemo, Adeyemi T, Obadare, Temitope O, Abrudan, Monica, Argimón, Silvia, David, Sophia, Kekre, Mihir, Underwood, Anthony, Egwuenu, Abiodun, Ihekweazu, Chikwe, Aanensen, David M, Okeke, Iruka N
Published in Clinical infectious diseases (01.12.2021)
Published in Clinical infectious diseases (01.12.2021)
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An insight into whole genome sequencing data of methicillin-resistant Staphylococcus aureus circulating in a teaching hospital in North India
Bhatia, Mohit, Shamanna, Varun, Nagaraj, Geetha, Sravani, Dharmavaram, Gupta, Pratima, Omar, Balram Ji, Singh, Arpana, Rani, Diksha, Ravikumar, K.L.
Published in Indian journal of medical microbiology (01.07.2023)
Published in Indian journal of medical microbiology (01.07.2023)
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Complexity of Genomic Epidemiology of Carbapenem-Resistant Klebsiella pneumoniae Isolates in Colombia Urges the Reinforcement of Whole Genome Sequencing-Based Surveillance Programs
Saavedra, Sandra Yamile, Bernal, Johan Fabian, Montilla-Escudero, Efraín, Arévalo, Stefany Alejandra, Prada, Diego Andrés, Valencia, María Fernanda, Moreno, Jaime, Hidalgo, Andrea Melissa, García-Vega, Ángela Sofía, Abrudan, Monica, Argimón, Silvia, Kekre, Mihir, Underwood, Anthony, Aanensen, David M, Duarte, Carolina, Donado-Godoy, Pilar
Published in Clinical infectious diseases (01.12.2021)
Published in Clinical infectious diseases (01.12.2021)
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Geographical migration and fitness dynamics of Streptococcus pneumoniae
Belman, Sophie, Lefrancq, Noémie, Nzenze, Susan, Downs, Sarah, du Plessis, Mignon, Lo, Stephanie W., Corso, Alejandra, Gagetti, Paula, Brooks, Abdullah W., Hasanuzzaman, Md, Saha, Samir K., Saha, Senjuti, Davydov, Alexander, Titov, Leonid, Almeida, Samanta Cristine Grassi, Turner, Paul, Zhao, Chunjiang, Wang, Hui, Ip, Margaret, Ho, Pak Leung, Law, Pierra, Keenan, Jeremy D., Cohen, Robert, Varon, Emmanuelle, Sampane-Donkor, Eric, Veeraraghavan, Balaji, Nagaraj, Geetha, Ravikumar, K. L., Yuvaraj, J., Shamanna Noga, Varun, Benisty, Rachel, Dagan, Ron, Bigogo, Godfrey, Verani, Jennifer, Kiran, Anmol, Everett, Dean B., Cornick, Jennifer, Alaerts, Maaike, Sekaran, Shamala Devi, Clarke, Stuart C., Moiane, Benild, Sigauque, Betuel, Mucavele, Helio, Pollard, Andrew J., Kandasamy, Rama, Carter, Philip E., Obaro, Stephen K., Lehmann, Deborah, Ford, Rebecca, Ochoa, Theresa J., Skoczynska, Anna, Sadowy, Ewa, Hryniewicz, Waleria, Puzia, Weronika, Doiphode, Sanjay, Egorova, Ekaterina, Voropaeva, Elena, Urban, Yulia, Kastrin, Tamara, Ndlangisa, Kedibone, De Gouveia, Linda, Ali, Mushal, Wolter, Nicole, Lekhuleni, Cebile, Almagro, Carmen Muñoz, Alonso, Alba Redin, Henares, Desiree, Srifuengfung, Somporn, Kwambana-Adams, Brenda, Foster-Nyarko, Ebenezer, Bojang, Ebrima, Antonio, Martin, Tientcheu, Peggy-Estelle, Moïsi, Jennifer, Nurse-Lucas, Michele, Akpaka, Patrick E., Eser, Özgen Köseoglu, Scott, Anthony, Aanensen, David, Croucher, Nicholas, Lees, John A., Gladstone, Rebecca A., Tonkin-Hill, Gerry, Chaguza, Chrispin, Cleary, David, Mellor, Kate, Beall, Bernard, Klugman, Keith P., Rodgers, Gail, Hawkins, Paulina A., Blaschke, Anne J., Pershing, Nicole L., McGee, Lesley, Madhi, Shabir A., von Gottberg, Anne, Bentley, Stephen D., Salje, Henrik
Published in Nature (London) (11.07.2024)
Published in Nature (London) (11.07.2024)
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Integrating Scalable Genome Sequencing Into Microbiology Laboratories for Routine Antimicrobial Resistance Surveillance
Kekre, Mihir, Arevalo, Stefany Alejandra, Valencia, María Fernanda, Lagrada, Marietta L, Macaranas, Polle Krystle V, Nagaraj, Geetha, Oaikhena, Anderson O, Olorosa, Agnettah M, Aanensen, David M
Published in Clinical infectious diseases (01.12.2021)
Published in Clinical infectious diseases (01.12.2021)
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Genome Sequencing Identifies Previously Unrecognized Klebsiella pneumoniae Outbreaks in Neonatal Intensive Care Units in the Philippines
Carlos, Celia C, Masim, Melissa Ana L, Lagrada, Marietta L, Gayeta, June M, Macaranas, Polle Krystle V, Sia, Sonia B, Facun, Maria Adelina M, Palarca, Janziel Fiel C, Olorosa, Agnettah M, Cueno, Gicell Anne C, Abrudan, Monica, Abudahab, Khalil, Argimón, Silvia, Kekre, Mihir, Underwood, Anthony, Stelling, John, Aanensen, David M
Published in Clinical infectious diseases (01.12.2021)
Published in Clinical infectious diseases (01.12.2021)
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Train-the-Trainer as an Effective Approach to Building Global Networks of Experts in Genomic Surveillance of Antimicrobial Resistance (AMR)
Abrudan, Monica, Matimba, Alice, Nikolic, Dusanka, Hughes, Darren, Argimón, Silvia, Kekre, Mihir, Underwood, Anthony, Aanensen, David M
Published in Clinical infectious diseases (01.12.2021)
Published in Clinical infectious diseases (01.12.2021)
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Implementing Whole-Genome Sequencing for Ongoing Surveillance of Antimicrobial Resistance: Exemplifying Insights Into Klebsiella pneumoniae
Aanensen, David M, Carlos, Celia C, Donado-Godoy, Pilar, Okeke, Iruka N, Ravikumar, K L
Published in Clinical infectious diseases (01.12.2021)
Published in Clinical infectious diseases (01.12.2021)
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Good Financial Grant Practice: A Tool for Developing and Demonstrating Institutional Financial and Grant Management Capacity in Global Health
Harste, Harry J, Kiff, Genevieve, Okeke, Iruka N, Adebiyi, Akindele O, Ravikumar, K L, Nagaraj, Geetha, Ajiboye, Jolaade J, Osma Castro, Erik C D, Herrera, Elmer, Aanensen, David M
Published in Clinical infectious diseases (01.12.2021)
Published in Clinical infectious diseases (01.12.2021)
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Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study
Lo, Stephanie W, Mellor, Kate, Cohen, Robert, Alonso, Alba Redin, Belman, Sophie, Kumar, Narender, Hawkins, Paulina A, Gladstone, Rebecca A, von Gottberg, Anne, Veeraraghavan, Balaji, Ravikumar, K L, Kandasamy, Rama, Pollard, Sir Andrew J, Saha, Samir K, Bigogo, Godfrey, Antonio, Martin, Kwambana-Adams, Brenda, Mirza, Shaper, Shakoor, Sadia, Nisar, Imran, Cornick, Jennifer E, Lehmann, Deborah, Ford, Rebecca L, Sigauque, Betuel, Turner, Paul, Moïsi, Jennifer, Obaro, Stephen K, Dagan, Ron, Diawara, Idrissa, Skoczyńska, Anna, Wang, Hui, Carter, Philip E, Klugman, Keith P, Rodgers, Gail, Breiman, Robert F, McGee, Lesley, Bentley, Stephen D, Muñoz-Almagro, Carmen, Varon, Emmanuelle
Published in The Lancet. Microbe (01.10.2022)
Published in The Lancet. Microbe (01.10.2022)
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A mosaic tetracycline resistance gene tet(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa
Lo, Stephanie W, Gladstone, Rebecca A, van Tonder, Andries J, Du Plessis, Mignon, Cornick, Jennifer E, Hawkins, Paulina A, Madhi, Shabir A, Nzenze, Susan A, Kandasamy, Rama, Ravikumar, K L, Elmdaghri, Naima, Kwambana-Adams, Brenda, Almeida, Samanta Cristine Grassi, Skoczynska, Anna, Egorova, Ekaterina, Titov, Leonid, Saha, Samir K, Paragi, Metka, Everett, Dean B, Antonio, Martin, Klugman, Keith P, Li, Yuan, Metcalf, Benjamin J, Beall, Bernard, McGee, Lesley, Breiman, Robert F, Bentley, Stephen D, von Gottberg, Anne
Published in Journal of antimicrobial chemotherapy (01.03.2020)
Published in Journal of antimicrobial chemotherapy (01.03.2020)
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