A decade of genomic history for healthcare-associated Enterococcus faecium in the United Kingdom and Ireland
Raven, Kathy E, Reuter, Sandra, Reynolds, Rosy, Brodrick, Hayley J, Russell, Julie E, Török, M Estée, Parkhill, Julian, Peacock, Sharon J
Published in Genome research (01.10.2016)
Published in Genome research (01.10.2016)
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Journal Article
One Health Genomic Surveillance of Escherichia coli Demonstrates Distinct Lineages and Mobile Genetic Elements in Isolates from Humans versus Livestock
Ludden, Catherine, Raven, Kathy E, Jamrozy, Dorota, Gouliouris, Theodore, Blane, Beth, Coll, Francesc, de Goffau, Marcus, Naydenova, Plamena, Horner, Carolyne, Hernandez-Garcia, Juan, Wood, Paul, Hadjirin, Nazreen, Radakovic, Milorad, Brown, Nicholas M, Holmes, Mark, Parkhill, Julian, Peacock, Sharon J
Published in mBio (22.01.2019)
Published in mBio (22.01.2019)
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Journal Article
Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing
Raven, Kathy E., Gouliouris, Theodore, Brodrick, Hayley, Coll, Francesc, Brown, Nicholas M., Reynolds, Rosy, Reuter, Sandra, Török, M. Estée, Parkhill, Julian, Peacock, Sharon J.
Published in Clinical infectious diseases (01.04.2017)
Published in Clinical infectious diseases (01.04.2017)
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Journal Article
Molecular tracing of the emergence, diversification, and transmission of S. aureus sequence type 8 in a New York community
Uhlemann, Anne-Catrin, Dordel, Janina, Knox, Justin R., Raven, Kathy E., Parkhill, Julian, Holden, Matthew T. G., Peacock, Sharon J., Lowy, Franklin D.
Published in Proceedings of the National Academy of Sciences - PNAS (06.05.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (06.05.2014)
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Journal Article
Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community
Coll, Francesc, Harrison, Ewan M, Toleman, Michelle S, Reuter, Sandra, Raven, Kathy E, Blane, Beth, Palmer, Beverley, Kappeler, A Ruth M, Brown, Nicholas M, Török, M Estée, Parkhill, Julian, Peacock, Sharon J
Published in Science translational medicine (25.10.2017)
Published in Science translational medicine (25.10.2017)
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Journal Article
Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment
Gouliouris, Theodore, Raven, Kathy E, Moradigaravand, Danesh, Ludden, Catherine, Coll, Francesc, Blane, Beth, Naydenova, Plamena, Horner, Carolyne, Brown, Nicholas M, Corander, Jukka, Limmathurotsakul, Direk, Parkhill, Julian, Peacock, Sharon J
Published in Genome research (01.04.2019)
Published in Genome research (01.04.2019)
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Journal Article
Definition of a genetic relatedness cutoff to exclude recent transmission of meticillin-resistant Staphylococcus aureus: a genomic epidemiology analysis
Coll, Francesc, Raven, Kathy E, Knight, Gwenan M, Blane, Beth, Harrison, Ewan M, Leek, Danielle, Enoch, David A, Brown, Nicholas M, Parkhill, Julian, Peacock, Sharon J
Published in The Lancet. Microbe (01.12.2020)
Published in The Lancet. Microbe (01.12.2020)
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Journal Article
Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand
Runcharoen, Chakkaphan, Raven, Kathy E, Reuter, Sandra, Kallonen, Teemu, Paksanont, Suporn, Thammachote, Jeeranan, Anun, Suthatip, Blane, Beth, Parkhill, Julian, Peacock, Sharon J, Chantratita, Narisara
Published in Genome medicine (06.09.2017)
Published in Genome medicine (06.09.2017)
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Journal Article
Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom
Gouliouris, Theodore, Raven, Kathy E, Ludden, Catherine, Blane, Beth, Corander, Jukka, Horner, Carolyne S, Hernandez-Garcia, Juan, Wood, Paul, Hadjirin, Nazreen F, Radakovic, Milorad, Holmes, Mark A, de Goffau, Marcus, Brown, Nicholas M, Parkhill, Julian, Peacock, Sharon J
Published in mBio (06.11.2018)
Published in mBio (06.11.2018)
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Journal Article
Duration of exposure to multiple antibiotics is associated with increased risk of VRE bacteraemia: a nested case-control study
Gouliouris, Theodore, Warne, Ben, Cartwright, Edward J P, Bedford, Luke, Weerasuriya, Chathika K, Raven, Kathy E, Brown, Nick M, Török, M Estée, Limmathurotsakul, Direk, Peacock, Sharon J
Published in Journal of antimicrobial chemotherapy (01.06.2018)
Published in Journal of antimicrobial chemotherapy (01.06.2018)
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Journal Article
Evaluation of a fully automated bioinformatics tool to predict antibiotic resistance from MRSA genomes
Kumar, Narender, Raven, Kathy E, Blane, Beth, Leek, Danielle, Brown, Nicholas M, Bragin, Eugene, Rhodes, Paul A, Parkhill, Julian, Peacock, Sharon J
Published in Journal of antimicrobial chemotherapy (01.05.2020)
Published in Journal of antimicrobial chemotherapy (01.05.2020)
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Journal Article
Methodology for Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates in a Routine Hospital Microbiology Laboratory
Raven, Kathy E, Blane, Beth, Leek, Danielle, Churcher, Carol, Kokko-Gonzales, Paula, Pugazhendhi, Dhamayanthi, Fraser, Louise, Betley, Jason, Parkhill, Julian, Peacock, Sharon J
Published in Journal of clinical microbiology (01.06.2019)
Published in Journal of clinical microbiology (01.06.2019)
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Journal Article
A common protocol for the simultaneous processing of multiple clinically relevant bacterial species for whole genome sequencing
Raven, Kathy E., Girgis, Sophia T., Akram, Asha, Blane, Beth, Leek, Danielle, Brown, Nicholas, Peacock, Sharon J.
Published in Scientific reports (08.01.2021)
Published in Scientific reports (08.01.2021)
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Journal Article
Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland
Reuter, Sandra, Török, M Estée, Holden, Matthew T G, Reynolds, Rosy, Raven, Kathy E, Blane, Beth, Donker, Tjibbe, Bentley, Stephen D, Aanensen, David M, Grundmann, Hajo, Feil, Edward J, Spratt, Brian G, Parkhill, Julian, Peacock, Sharon J
Published in Genome research (01.02.2016)
Published in Genome research (01.02.2016)
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Journal Article
Pilot Evaluation of a Fully Automated Bioinformatics System for Analysis of Methicillin-Resistant Staphylococcus aureus Genomes and Detection of Outbreaks
Brown, Nicholas M, Blane, Beth, Raven, Kathy E, Kumar, Narender, Leek, Danielle, Bragin, Eugene, Rhodes, Paul A, Enoch, David A, Thaxter, Rachel, Parkhill, Julian, Peacock, Sharon J
Published in Journal of clinical microbiology (01.11.2019)
Published in Journal of clinical microbiology (01.11.2019)
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Journal Article
The Myeloid Transcription Factor GATA-2 Regulates the Viral UL144 Gene during Human Cytomegalovirus Latency in an Isolate-Specific Manner
Poole, Emma, Walther, Anett, Raven, Kathy, Benedict, Christopher A, Mason, Gavin M, Sinclair, John
Published in Journal of Virology (01.04.2013)
Published in Journal of Virology (01.04.2013)
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Journal Article
Quantifying acquisition and transmission of Enterococcus faecium using genomic surveillance
Gouliouris, Theodore, Coll, Francesc, Ludden, Catherine, Blane, Beth, Raven, Kathy E., Naydenova, Plamena, Crawley, Charles, Török, Mili Estée, Enoch, David A., Brown, Nicholas M., Harrison, Ewan M., Parkhill, Julian, Peacock, Sharon J.
Published in Nature microbiology (01.01.2021)
Published in Nature microbiology (01.01.2021)
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Journal Article
Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom
Brodrick, Hayley J, Raven, Kathy E, Kallonen, Teemu, Jamrozy, Dorota, Blane, Beth, Brown, Nicholas M, Martin, Veronique, Török, M Estée, Parkhill, Julian, Peacock, Sharon J
Published in Genome medicine (25.07.2017)
Published in Genome medicine (25.07.2017)
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Journal Article