HIV Rev Assembly on the Rev Response Element (RRE): A Structural Perspective
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Book Review
Using SHAPE-MaP to probe small molecule-RNA interactions
Martin, Sarah, Blankenship, Carson, Rausch, Jason W., Sztuba-Solinska, Joanna
Published in Methods (San Diego, Calif.) (01.09.2019)
Published in Methods (San Diego, Calif.) (01.09.2019)
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HIV-1 viremia not suppressible by antiretroviral therapy can originate from large T cell clones producing infectious virus
Halvas, Elias K, Joseph, Kevin W, Brandt, Leah D, Guo, Shuang, Sobolewski, Michele D, Jacobs, Jana L, Tumiotto, Camille, Bui, John K, Cyktor, Joshua C, Keele, Brandon F, Morse, Gene D, Bale, Michael J, Shao, Wei, Kearney, Mary F, Coffin, John M, Rausch, Jason W, Wu, Xiaolin, Hughes, Stephen H, Mellors, John W
Published in The Journal of clinical investigation (01.11.2020)
Published in The Journal of clinical investigation (01.11.2020)
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HIV Expression in Infected T Cell Clones
Rausch, Jason W, Parvez, Shadab, Pathak, Sachi, Capoferri, Adam A, Kearney, Mary F
Published in Viruses (01.01.2024)
Published in Viruses (01.01.2024)
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An Unusual Topological Structure of the HIV-1 Rev Response Element
Fang, Xianyang, Wang, Jinbu, O’Carroll, Ina P., Mitchell, Michelle, Zuo, Xiaobing, Wang, Yi, Yu, Ping, Liu, Yu, Rausch, Jason W., Dyba, Marzena A., Kjems, Jørgen, Schwieters, Charles D., Seifert, Soenke, Winans, Randall E., Watts, Norman R., Stahl, Stephen J., Wingfield, Paul T., Byrd, R. Andrew, Le Grice, Stuart F.J., Rein, Alan, Wang, Yun-Xing
Published in Cell (24.10.2013)
Published in Cell (24.10.2013)
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Kaposi's sarcoma-associated herpesvirus polyadenylated nuclear RNA: a structural scaffold for nuclear, cytoplasmic and viral proteins
Sztuba-Solinska, Joanna, Rausch, Jason W, Smith, Rodman, Miller, Jennifer T, Whitby, Denise, Le Grice, Stuart F J
Published in Nucleic acids research (20.06.2017)
Published in Nucleic acids research (20.06.2017)
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Combined HIV-1 sequence and integration site analysis informs viral dynamics and allows reconstruction of replicating viral ancestors
Patro, Sean C., Brandt, Leah D., Bale, Michael J., Halvas, Elias K., Joseph, Kevin W., Shao, Wei, Wu, Xiaolin, Guo, Shuang, Murrell, Ben, Wiegand, Ann, Spindler, Jonathan, Raley, Castle, Hautman, Christopher, Sobolewski, Michele, Fennessey, Christine M., Hu, Wei-Shau, Luke, Brian, Hasson, Jenna M., Niyongabo, Aurelie, Capoferri, Adam A., Keele, Brandon F., Milush, Jeff, Hoh, Rebecca, Deeks, Steven G., Maldarelli, Frank, Hughes, Stephen H., Coffin, John M., Rausch, Jason W., Mellors, John W., Kearney, Mary F.
Published in Proceedings of the National Academy of Sciences - PNAS (17.12.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (17.12.2019)
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Deep Sequencing Analysis of Individual HIV-1 Proviruses Reveals Frequent Asymmetric Long Terminal Repeats
Joseph, Kevin W, Halvas, Elias K, Brandt, Leah D, Patro, Sean C, Rausch, Jason W, Chopra, Abha, Mallal, Simon, Kearney, Mary F, Coffin, John M, Mellors, John W
Published in Journal of virology (13.07.2022)
Published in Journal of virology (13.07.2022)
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Interplay of primary sequence, position and secondary RNA structure determines alternative splicing of LMNA in a pre-mature aging syndrome
Shilo, Asaf, Tosto, Frances Anne, Rausch, Jason W, Le Grice, Stuart F J, Misteli, Tom
Published in Nucleic acids research (20.06.2019)
Published in Nucleic acids research (20.06.2019)
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Journal Article
Dynamic binding orientations direct activity of HIV reverse transcriptase
Zhuang, Xiaowei, Abbondanzieri, Elio A, Bokinsky, Gregory, Rausch, Jason W, Zhang, Jennifer X, Le Grice, Stuart F. J
Published in Nature (08.05.2008)
Published in Nature (08.05.2008)
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Structural complexity of Dengue virus untranslated regions: cis-acting RNA motifs and pseudoknot interactions modulating functionality of the viral genome
Sztuba-Solinska, Joanna, Teramoto, Tadahisa, Rausch, Jason W, Shapiro, Bruce A, Padmanabhan, Radhakrishnan, Le Grice, Stuart F J
Published in Nucleic Acids Research (01.05.2013)
Published in Nucleic Acids Research (01.05.2013)
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Web Resource
A Pre-Vaccination Baseline of SARS-CoV-2 Genetic Surveillance and Diversity in the United States
Capoferri, Adam A, Shao, Wei, Spindler, Jon, Coffin, John M, Rausch, Jason W, Kearney, Mary F
Published in Viruses (07.01.2022)
Published in Viruses (07.01.2022)
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Journal Article
Probing the Structures of Viral RNA Regulatory Elements with SHAPE and Related Methodologies
Rausch, Jason W, Sztuba-Solinska, Joanna, Le Grice, Stuart F J
Published in Frontiers in microbiology (09.01.2018)
Published in Frontiers in microbiology (09.01.2018)
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Journal Article
Slide into Action: Dynamic Shuttling of HIV Reverse Transcriptase on Nucleic Acid Substrates
Liu, Shixin, Abbondanzieri, Elio A, Rausch, Jason W, Grice, Stuart F.J. Le, Zhuang, Xiaowei
Published in Science (American Association for the Advancement of Science) (14.11.2008)
Published in Science (American Association for the Advancement of Science) (14.11.2008)
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CpG Methylation Profiles of HIV-1 Proviral DNA in Individuals on ART
Boltz, Valerie F., Ceriani, Cristina, Rausch, Jason W., Shao, Wei, Bale, Michael J., Keele, Brandon F., Hoh, Rebecca, Milush, Jeffrey M., Deeks, Steve G., Maldarelli, Frank, Kearney, Mary F., Coffin, John M.
Published in Viruses (01.05.2021)
Published in Viruses (01.05.2021)
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