Plant_SNP_TATA_Z-Tester: A Web Service That Unequivocally Estimates the Impact of Proximal Promoter Mutations on Plant Gene Expression
Rasskazov, Dmitry, Chadaeva, Irina, Sharypova, Ekaterina, Zolotareva, Karina, Khandaev, Bato, Ponomarenko, Petr, Podkolodnyy, Nikolay, Tverdokhleb, Natalya, Vishnevsky, Oleg, Bogomolov, Anton, Podkolodnaya, Olga, Savinkova, Ludmila, Zemlyanskaya, Elena, Golubyatnikov, Vadimir, Kolchanov, Nikolay, Ponomarenko, Mikhail
Published in International journal of molecular sciences (04.08.2022)
Published in International journal of molecular sciences (04.08.2022)
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Journal Article
AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of Arabidopsis thaliana L
Bogomolov, Anton, Zolotareva, Karina, Filonov, Sergey, Chadaeva, Irina, Rasskazov, Dmitry, Sharypova, Ekaterina, Podkolodnyy, Nikolay, Ponomarenko, Petr, Savinkova, Ludmila, Tverdokhleb, Natalya, Khandaev, Bato, Kondratyuk, Ekaterina, Podkolodnaya, Olga, Zemlyanskaya, Elena, Kolchanov, Nikolay A, Ponomarenko, Mikhail
Published in International journal of molecular sciences (03.01.2024)
Published in International journal of molecular sciences (03.01.2024)
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Journal Article
Candidate SNP Markers Significantly Altering the Affinity of TATA-Binding Protein for the Promoters of Human Hub Genes for Atherogenesis, Atherosclerosis and Atheroprotection
Bogomolov, Anton, Filonov, Sergey, Chadaeva, Irina, Rasskazov, Dmitry, Khandaev, Bato, Zolotareva, Karina, Kazachek, Anna, Oshchepkov, Dmitry, Ivanisenko, Vladimir A, Demenkov, Pavel, Podkolodnyy, Nikolay, Kondratyuk, Ekaterina, Ponomarenko, Petr, Podkolodnaya, Olga, Mustafin, Zakhar, Savinkova, Ludmila, Kolchanov, Nikolay, Tverdokhleb, Natalya, Ponomarenko, Mikhail
Published in International journal of molecular sciences (19.05.2023)
Published in International journal of molecular sciences (19.05.2023)
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Journal Article
Candidate SNP markers of reproductive potential are predicted by a significant change in the affinity of TATA-binding protein for human gene promoters
Chadaeva, Irina V, Ponomarenko, Petr M, Rasskazov, Dmitry A, Sharypova, Ekaterina B, Kashina, Elena V, Zhechev, Dmitry A, Drachkova, Irina A, Arkova, Olga V, Savinkova, Ludmila K, Ponomarenko, Mikhail P, Kolchanov, Nikolay A, Osadchuk, Ludmila V, Osadchuk, Alexandr V
Published in BMC genomics (09.02.2018)
Published in BMC genomics (09.02.2018)
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Journal Article
A Bioinformatics Model of Human Diseases on the Basis of Differentially Expressed Genes (of Domestic Versus Wild Animals) That Are Orthologs of Human Genes Associated with Reproductive-Potential Changes
Vasiliev, Gennady, Chadaeva, Irina, Rasskazov, Dmitry, Ponomarenko, Petr, Sharypova, Ekaterina, Drachkova, Irina, Bogomolov, Anton, Savinkova, Ludmila, Ponomarenko, Mikhail, Kolchanov, Nikolay, Osadchuk, Alexander, Oshchepkov, Dmitry, Osadchuk, Ludmila
Published in International journal of molecular sciences (26.02.2021)
Published in International journal of molecular sciences (26.02.2021)
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Journal Article
Candidate SNP Markers of Atherogenesis Significantly Shifting the Affinity of TATA-Binding Protein for Human Gene Promoters show stabilizing Natural Selection as a Sum of Neutral Drift Accelerating Atherogenesis and Directional Natural Selection Slowing It
Ponomarenko, Mikhail, Rasskazov, Dmitry, Chadaeva, Irina, Sharypova, Ekaterina, Drachkova, Irina, Oshchepkov, Dmitry, Ponomarenko, Petr, Savinkova, Ludmila, Oshchepkova, Evgeniya, Nazarenko, Maria, Kolchanov, Nikolay
Published in International journal of molecular sciences (05.02.2020)
Published in International journal of molecular sciences (05.02.2020)
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Journal Article
Disruptive Selection of Human Immunostimulatory and Immunosuppressive Genes Both Provokes and Prevents Rheumatoid Arthritis, Respectively, as a Self-Domestication Syndrome
Klimova, Natalya V., Oshchepkova, Evgeniya, Chadaeva, Irina, Sharypova, Ekaterina, Ponomarenko, Petr, Drachkova, Irina, Rasskazov, Dmitry, Oshchepkov, Dmitry, Ponomarenko, Mikhail, Savinkova, Ludmila, Kolchanov, Nikolay A., Kozlov, Vladimir
Published in Frontiers in genetics (22.06.2021)
Published in Frontiers in genetics (22.06.2021)
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Journal Article
Candidate SNP Markers of Familial and Sporadic Alzheimer's Diseases Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters
Ponomarenko, Petr, Chadaeva, Irina, Rasskazov, Dmitry A, Sharypova, Ekaterina, Kashina, Elena V, Drachkova, Irina, Zhechev, Dmitry, Ponomarenko, Mikhail P, Savinkova, Ludmila K, Kolchanov, Nikolay
Published in Frontiers in aging neuroscience (20.07.2017)
Published in Frontiers in aging neuroscience (20.07.2017)
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Journal Article
Obesity-related known and candidate SNP markers can significantly change affinity of TATA-binding protein for human gene promoters
Arkova, Olga V, Ponomarenko, Mikhail P, Rasskazov, Dmitry A, Drachkova, Irina A, Arshinova, Tatjana V, Ponomarenko, Petr M, Savinkova, Ludmila K, Kolchanov, Nikolay A
Published in BMC genomics (16.12.2015)
Published in BMC genomics (16.12.2015)
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Journal Article
Candidate SNP markers of aggressiveness-related complications and comorbidities of genetic diseases are predicted by a significant change in the affinity of TATA-binding protein for human gene promoters
Chadaeva, Irina V, Ponomarenko, Mikhail P, Rasskazov, Dmitry A, Sharypova, Ekaterina B, Kashina, Elena V, Matveeva, Marina Yu, Arshinova, Tatjana V, Ponomarenko, Petr M, Arkova, Olga V, Bondar, Natalia P, Savinkova, Ludmila K, Kolchanov, Nikolay A
Published in BMC genomics (28.12.2016)
Published in BMC genomics (28.12.2016)
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Journal Article
Natural Selection Equally Supports the Human Tendencies in Subordination and Domination: A Genome-Wide Study With in silico Confirmation and in vivo Validation in Mice
Chadaeva, Irina, Ponomarenko, Petr, Rasskazov, Dmitry, Sharypova, Ekaterina, Kashina, Elena, Kleshchev, Maxim, Ponomarenko, Mikhail, Naumenko, Vladimir, Savinkova, Ludmila, Kolchanov, Nikolay, Osadchuk, Ludmila, Osadchuk, Alexandr
Published in Frontiers in genetics (20.02.2019)
Published in Frontiers in genetics (20.02.2019)
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Journal Article
Disruptive natural selection by male reproductive potential prevents underexpression of protein-coding genes on the human Y chromosome as a self-domestication syndrome
Ponomarenko, Mikhail, Kleshchev, Maxim, Ponomarenko, Petr, Chadaeva, Irina, Sharypova, Ekaterina, Rasskazov, Dmitry, Kolmykov, Semyon, Drachkova, Irina, Vasiliev, Gennady, Gutorova, Natalia, Ignatieva, Elena, Savinkova, Ludmila, Bogomolov, Anton, Osadchuk, Ludmila, Osadchuk, Alexandr, Oshchepkov, Dmitry
Published in BMC genetics (22.10.2020)
Published in BMC genetics (22.10.2020)
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Journal Article
AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of IArabidopsis thaliana/I L
Bogomolov, Anton, Zolotareva, Karina, Filonov, Sergey, Chadaeva, Irina, Rasskazov, Dmitry, Sharypova, Ekaterina, Podkolodnyy, Nikolay, Ponomarenko, Petr, Savinkova, Ludmila, Tverdokhleb, Natalya, Khandaev, Bato, Kondratyuk, Ekaterina, Podkolodnaya, Olga, Zemlyanskaya, Elena, Kolchanov, Nikolay A, Ponomarenko, Mikhail
Published in International journal of molecular sciences (01.01.2024)
Published in International journal of molecular sciences (01.01.2024)
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Journal Article
How to Use SNP_TATA_Comparator to Find a Significant Change in Gene Expression Caused by the Regulatory SNP of This Gene’s Promoter via a Change in Affinity of the TATA-Binding Protein for This Promoter
Kolchanov, Nikolay, Suslov, Valentin, Ponomarenko, M. P., Arkova, Olga, Rasskazov, Dmitry, Ponomarenko, Mikhail, Savinkova, Ludmila
Published in BioMed research international (01.01.2015)
Published in BioMed research international (01.01.2015)
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Journal Article
Chromosome-Level Genome Assemblies Expand Capabilities of Genomics for Conservation Biology
Totikov, Azamat, Tomarovsky, Andrey, Prokopov, Dmitry, Yakupova, Aliya, Bulyonkova, Tatiana, Derezanin, Lorena, Rasskazov, Dmitry, Wolfsberger, Walter W, Koepfli, Klaus-Peter, Oleksyk, Taras K, Kliver, Sergei
Published in Genes (28.08.2021)
Published in Genes (28.08.2021)
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Candidate SNP Markers of Gender-Biased Autoimmune Complications of Monogenic Diseases Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters
Ponomarenko, Mikhail P, Arkova, Olga, Rasskazov, Dmitry, Ponomarenko, Petr, Savinkova, Ludmila, Kolchanov, Nikolay
Published in Frontiers in immunology (04.04.2016)
Published in Frontiers in immunology (04.04.2016)
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Journal Article
Candidate SNP Markers of Chronopathologies Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters
Ponomarenko, Mikhail, Kolchanov, Nikolay, Chadaeva, Irina, Podkolodny, Nikolay L., Podkolodnaya, Olga, Savinkova, Ludmila, Sharypova, Ekaterina, Suslov, Valentin, Rasskazov, Dmitry, Ponomarenko, M. P., Tverdokhleb, Natalya N.
Published in BioMed research international (01.01.2016)
Published in BioMed research international (01.01.2016)
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Journal Article
SNP_TATA_Comparator: genomewide landmarks for preventive personalized medicine
Ponomarenko, Mikhail, Rasskazov, Dmitry, Chadaeva, Irina, Sharypova, Ekaterina, Ponomarenko, Petr, Arkova, Olga, Kashina, Elena, Ivanisenko, Nikita, Zhechev, Dmitry, Savinkova, Ludmila, Kolchanov, Nikolay
Published in Frontiers in bioscience (Scholar edition) (01.06.2017)
Published in Frontiers in bioscience (Scholar edition) (01.06.2017)
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Journal Article
How to Use SNPiTATAiComparator to Find a Significant Change in Gene Expression Caused by the Regulatory SNP of This Gene's Promoter via a Change in Affinity of the TATA-Binding Protein for This Promoter
Ponomarenko, Mikhail, Rasskazov, Dmitry, Arkova, Olga, Ponomarenko, Petr, Suslov, Valentin, Savinkova, Ludmila, Kolchanov, Nikolay
Published in BioMed research international (01.01.2015)
Published in BioMed research international (01.01.2015)
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