Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors
Plass, Mireya, Rasmussen, Simon H, Krogh, Anders
Published in PLoS computational biology (01.04.2017)
Published in PLoS computational biology (01.04.2017)
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Journal Article
A G(enomic)P(ositioning)S(ystem) for Plant RNAPII Transcription
Leng, Xueyuan, Thomas, Quentin, Rasmussen, Simon Horskjær, Marquardt, Sebastian
Published in Trends in plant science (01.08.2020)
Published in Trends in plant science (01.08.2020)
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Journal Article
Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
LARSEN, Mette V, COSENTINO, Salvatore, LUND, Ole, RASMUSSEN, Simon, FRIIS, Carsten, HASMAN, Henrik, LYKKE MARVIG, Rasmus, JELSBAK, Lars, SICHERITZ-PONTEN, Thomas, USSERY, David W, AARESTRUP, Frank M
Published in Journal of Clinical Microbiology (01.04.2012)
Published in Journal of Clinical Microbiology (01.04.2012)
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Journal Article
Double-Stranded RNA Is Produced by Positive-Strand RNA Viruses and DNA Viruses but Not in Detectable Amounts by Negative-Strand RNA Viruses
WEBER, Friedemann, WAGNER, Valentina, RASMUSSEN, Simon B, HARTMANN, Rune, PALUDAN, Søren R
Published in Journal of Virology (01.05.2006)
Published in Journal of Virology (01.05.2006)
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Transcriptome analysis of root‐knot nematode (Meloidogyne incognita)‐infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses
Shukla, Neha, Yadav, Rachita, Kaur, Pritam, Rasmussen, Simon, Goel, Shailendra, Agarwal, Manu, Jagannath, Arun, Gupta, Ramneek, Kumar, Amar
Published in Molecular plant pathology (01.03.2018)
Published in Molecular plant pathology (01.03.2018)
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Journal Article
Transcriptome Responses to Combinations of Stresses in Arabidopsis
Rasmussen, Simon, Barah, Pankaj, Suarez-Rodriguez, Maria Cristina, Bressendorff, Simon, Friis, Pia, Costantino, Paolo, Bones, Atle M., Nielsen, Henrik Bjørn, Mundy, John
Published in Plant physiology (Bethesda) (01.04.2013)
Published in Plant physiology (Bethesda) (01.04.2013)
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Journal Article
Benchmarking of methods for genomic taxonomy
Larsen, Mette V, Cosentino, Salvatore, Lukjancenko, Oksana, Saputra, Dhany, Rasmussen, Simon, Hasman, Henrik, Sicheritz-Pontén, Thomas, Aarestrup, Frank M, Ussery, David W, Lund, Ole
Published in Journal of clinical microbiology (01.05.2014)
Published in Journal of clinical microbiology (01.05.2014)
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Journal Article
Taxometer: Improving taxonomic classification of metagenomics contigs
Kutuzova, Svetlana, Nielsen, Mads, Piera, Pau, Nissen, Jakob Nybo, Rasmussen, Simon
Published in Nature communications (27.09.2024)
Published in Nature communications (27.09.2024)
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Journal Article
Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers
Sikora, Martin, Seguin-Orlando, Andaine, Sousa, Vitor C., Albrechtsen, Anders, Korneliussen, Thorfinn, Ko, Amy, Rasmussen, Simon, Dupanloup, Isabelle, Nigst, Philip R., Bosch, Marjolein D., Renaud, Gabriel, Allentoft, Morten E., Margaryan, Ashot, Vasilyev, Sergey V., Veselovskaya, Elizaveta V., Borutskaya, Svetlana B., Deviese, Thibaut, Comeskey, Dan, Higham, Tom, Manica, Andrea, Foley, Robert, Meltzer, David J., Nielsen, Rasmus, Excoffier, Laurent, Lahr, Marta Mirazon, Orlando, Ludovic, Willerslev, Eske
Published in Science (American Association for the Advancement of Science) (03.11.2017)
Published in Science (American Association for the Advancement of Science) (03.11.2017)
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Journal Article
Genome binning of viral entities from bulk metagenomics data
Johansen, Joachim, Plichta, Damian R., Nissen, Jakob Nybo, Jespersen, Marie Louise, Shah, Shiraz A., Deng, Ling, Stokholm, Jakob, Bisgaard, Hans, Nielsen, Dennis Sandris, Sørensen, Søren J., Rasmussen, Simon
Published in Nature communications (18.02.2022)
Published in Nature communications (18.02.2022)
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Journal Article
The genome of a Late Pleistocene human from a Clovis burial site in western Montana
Rasmussen, Morten, Anzick, Sarah L., Waters, Michael R., Skoglund, Pontus, DeGiorgio, Michael, Stafford, Thomas W., Rasmussen, Simon, Moltke, Ida, Albrechtsen, Anders, Doyle, Shane M., Poznik, G. David, Gudmundsdottir, Valborg, Yadav, Rachita, Malaspinas, Anna-Sapfo, V, Samuel Stockton White, Allentoft, Morten E., Cornejo, Omar E., Tambets, Kristiina, Eriksson, Anders, Heintzman, Peter D., Karmin, Monika, Korneliussen, Thorfinn Sand, Meltzer, David J., Pierre, Tracey L., Stenderup, Jesper, Saag, Lauri, Warmuth, Vera M., Lopes, Margarida C., Malhi, Ripan S., Brunak, Søren, Sicheritz-Ponten, Thomas, Barnes, Ian, Collins, Matthew, Orlando, Ludovic, Balloux, Francois, Manica, Andrea, Gupta, Ramneek, Metspalu, Mait, Bustamante, Carlos D., Jakobsson, Mattias, Nielsen, Rasmus, Willerslev, Eske
Published in Nature (London) (13.02.2014)
Published in Nature (London) (13.02.2014)
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Journal Article
Physiological and Genetic Adaptations to Diving in Sea Nomads
Ilardo, Melissa A., Moltke, Ida, Korneliussen, Thorfinn S., Cheng, Jade, Stern, Aaron J., Racimo, Fernando, de Barros Damgaard, Peter, Sikora, Martin, Seguin-Orlando, Andaine, Rasmussen, Simon, van den Munckhof, Inge C.L., ter Horst, Rob, Joosten, Leo A.B., Netea, Mihai G., Salingkat, Suhartini, Nielsen, Rasmus, Willerslev, Eske
Published in Cell (19.04.2018)
Published in Cell (19.04.2018)
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Journal Article
Rare truncating variants in the sarcomeric protein titin associate with familial and early-onset atrial fibrillation
Ahlberg, Gustav, Refsgaard, Lena, Lundegaard, Pia R., Andreasen, Laura, Ranthe, Mattis F., Linscheid, Nora, Nielsen, Jonas B., Melbye, Mads, Haunsø, Stig, Sajadieh, Ahmad, Camp, Lu, Olesen, Søren-Peter, Rasmussen, Simon, Lundby, Alicia, Ellinor, Patrick T., Holst, Anders G., Svendsen, Jesper H., Olesen, Morten S.
Published in Nature communications (17.10.2018)
Published in Nature communications (17.10.2018)
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Imputation of label-free quantitative mass spectrometry-based proteomics data using self-supervised deep learning
Webel, Henry, Niu, Lili, Nielsen, Annelaura Bach, Locard-Paulet, Marie, Mann, Matthias, Jensen, Lars Juhl, Rasmussen, Simon
Published in Nature communications (26.06.2024)
Published in Nature communications (26.06.2024)
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Journal Article
transcriptionally active regions in the genome of Bacillus subtilis
Rasmussen, Simon, Nielsen, Henrik Bjørn, Jarmer, Hanne
Published in Molecular microbiology (01.09.2009)
Published in Molecular microbiology (01.09.2009)
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Journal Article
Proteasomal degradation of herpes simplex virus capsids in macrophages releases DNA to the cytosol for recognition by DNA sensors
Horan, Kristy A, Hansen, Kathrine, Jakobsen, Martin R, Holm, Christian K, Søby, Stine, Unterholzner, Leonie, Thompson, Mikayla, West, John A, Iversen, Marie B, Rasmussen, Simon B, Ellermann-Eriksen, Svend, Kurt-Jones, Evelyn, Landolfo, Santo, Damania, Blossom, Melchjorsen, Jesper, Bowie, Andrew G, Fitzgerald, Katherine A, Paludan, Søren R
Published in The Journal of immunology (1950) (01.03.2013)
Published in The Journal of immunology (1950) (01.03.2013)
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Journal Article
Metagenomic species profiling using universal phylogenetic marker genes
Sunagawa, Shinichi, Mende, Daniel R, Zeller, Georg, Izquierdo-Carrasco, Fernando, Berger, Simon A, Kultima, Jens Roat, Coelho, Luis Pedro, Arumugam, Manimozhiyan, Tap, Julien, Nielsen, Henrik Bjørn, Rasmussen, Simon, Brunak, Søren, Pedersen, Oluf, Guarner, Francisco, de Vos, Willem M, Wang, Jun, Li, Junhua, Doré, Joël, Ehrlich, S Dusko, Stamatakis, Alexandros, Bork, Peer
Published in Nature methods (01.12.2013)
Published in Nature methods (01.12.2013)
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Journal Article
Self-protection strategies and health behaviour in patients with inflammatory rheumatic diseases during the COVID-19 pandemic: results and predictors in more than 12 000 patients with inflammatory rheumatic diseases followed in the Danish DANBIO registry
Glintborg, Bente, Jensen, Dorte Vendelbo, Engel, Sara, Terslev, Lene, Pfeiffer Jensen, Mogens, Hendricks, Oliver, Østergaard, Mikkel, Horskjær Rasmussen, Simon, Adelsten, Thomas, Colic, Ada, Danebod, Kamilla, Kildemand, Malene, Loft, Anne Gitte, Munk, Heidi Lausten, Pedersen, Jens Kristian, Østgård, René Drage, Møller Sørensen, Christian, Krogh, Niels Steen, Agerbo, Jette, Ziegler, Connie, Hetland, Merete Lund
Published in Rheumatic & musculoskeletal diseases open (01.01.2021)
Published in Rheumatic & musculoskeletal diseases open (01.01.2021)
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