Phased diploid genome assembly with single-molecule real-time sequencing
Chin, Chen-Shan, Peluso, Paul, Sedlazeck, Fritz J, Nattestad, Maria, Concepcion, Gregory T, Clum, Alicia, Dunn, Christopher, O'Malley, Ronan, Figueroa-Balderas, Rosa, Morales-Cruz, Abraham, Cramer, Grant R, Delledonne, Massimo, Luo, Chongyuan, Ecker, Joseph R, Cantu, Dario, Rank, David R, Schatz, Michael C
Published in Nature methods (01.12.2016)
Published in Nature methods (01.12.2016)
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Journal Article
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
Wenger, Aaron M, Peluso, Paul, Rowell, William J, Chang, Pi-Chuan, Hall, Richard J, Concepcion, Gregory T, Ebler, Jana, Fungtammasan, Arkarachai, Kolesnikov, Alexey, Olson, Nathan D, Töpfer, Armin, Alonge, Michael, Mahmoud, Medhat, Qian, Yufeng, Chin, Chen-Shan, Phillippy, Adam M, Schatz, Michael C, Myers, Gene, DePristo, Mark A, Ruan, Jue, Marschall, Tobias, Sedlazeck, Fritz J, Zook, Justin M, Li, Heng, Koren, Sergey, Carroll, Andrew, Rank, David R, Hunkapiller, Michael W
Published in Nature biotechnology (01.10.2019)
Published in Nature biotechnology (01.10.2019)
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Journal Article
Improved maize reference genome with single-molecule technologies
Jiao, Yinping, Peluso, Paul, Shi, Jinghua, Liang, Tiffany, Stitzer, Michelle C, Wang, Bo, Campbell, Michael S, Stein, Joshua C, Wei, Xuehong, Chin, Chen-Shan, Guill, Katherine, Regulski, Michael, Kumari, Sunita, Olson, Andrew, Gent, Jonathan, Schneider, Kevin L, Wolfgruber, Thomas K, May, Michael R, Springer, Nathan M, Antoniou, Eric, McCombie, W Richard, Presting, Gernot G, McMullen, Michael, Ross-Ibarra, Jeffrey, Dawe, R Kelly, Hastie, Alex, Rank, David R, Ware, Doreen
Published in Nature (London) (22.06.2017)
Published in Nature (London) (22.06.2017)
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Journal Article
flexible and efficient template format for circular consensus sequencing and SNP detection
Travers, Kevin J, Chin, Chen-Shan, Rank, David R, Eid, John S, Turner, Stephen W
Published in Nucleic acids research (01.08.2010)
Published in Nucleic acids research (01.08.2010)
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Journal Article
Real-Time DNA Sequencing from Single Polymerase Molecules
Eid, John, Fehr, Adrian, Gray, Jeremy, Luong, Khai, Lyle, John, Otto, Geoff, Peluso, Paul, Rank, David, Baybayan, Primo, Bettman, Brad, Bibillo, Arkadiusz, Bjornson, Keith, Chaudhuri, Bidhan, Christians, Frederick, Cicero, Ronald, Clark, Sonya, Dalal, Ravindra, deWinter, Alex, Dixon, John, Foquet, Mathieu, Gaertner, Alfred, Hardenbol, Paul, Heiner, Cheryl, Hester, Kevin, Holden, David, Kearns, Gregory, Kong, Xiangxu, Kuse, Ronald, Lacroix, Yves, Lin, Steven, Lundquist, Paul, Ma, Congcong, Marks, Patrick, Maxham, Mark, Murphy, Devon, Park, Insil, Pham, Thang, Phillips, Michael, Roy, Joy, Sebra, Robert, Shen, Gene, Sorenson, Jon, Tomaney, Austin, Travers, Kevin, Trulson, Mark, Vieceli, John, Wegener, Jeffrey, Wu, Dawn, Yang, Alicia, Zaccarin, Denis, Zhao, Peter, Zhong, Frank, Korlach, Jonas, Turner, Stephen
Published in Science (American Association for the Advancement of Science) (02.01.2009)
Published in Science (American Association for the Advancement of Science) (02.01.2009)
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Journal Article
Sequencing the unsequenceable: expanded CGG-repeat alleles of the fragile X gene
Loomis, Erick W, Eid, John S, Peluso, Paul, Yin, Jun, Hickey, Luke, Rank, David, McCalmon, Sarah, Hagerman, Randi J, Tassone, Flora, Hagerman, Paul J
Published in Genome research (01.01.2013)
Published in Genome research (01.01.2013)
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Journal Article
Chromosome-level genome assemblies of 2 hemichordates provide new insights into deuterostome origin and chromosome evolution
Che-Yi, Lin, Marlétaz, Ferdinand, Pérez-Posada, Alberto, Martínez-García, Pedro Manuel, Schloissnig, Siegfried, Peluso, Paul, Conception, Greg T, Bump, Paul, Yi-Chih Chen, Chou, Cindy, Ching-Yi, Lin, Fan, Tzu-Pei, Chang-Tai, Tsai, Gómez Skarmeta, José Luis, Tena, Juan J, Lowe, Christopher J, Rank, David R, Rokhsar, Daniel S, Jr-Kai, Yu, Yi-Hsien Su
Published in PLoS biology (03.06.2024)
Published in PLoS biology (03.06.2024)
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Journal Article
Long-read, whole-genome shotgun sequence data for five model organisms
Kim, Kristi E, Peluso, Paul, Babayan, Primo, Yeadon, P Jane, Yu, Charles, Fisher, William W, Chin, Chen-Shan, Rapicavoli, Nicole A, Rank, David R, Li, Joachim, Catcheside, David E A, Celniker, Susan E, Phillippy, Adam M, Bergman, Casey M, Landolin, Jane M
Published in Scientific data (25.11.2014)
Published in Scientific data (25.11.2014)
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Journal Article
A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome
Padgitt‐Cobb, Lillian K., Kingan, Sarah B., Wells, Jackson, Elser, Justin, Kronmiller, Brent, Moore, Daniel, Concepcion, Gregory, Peluso, Paul, Rank, David, Jaiswal, Pankaj, Henning, John, Hendrix, David A.
Published in The plant genome (01.03.2021)
Published in The plant genome (01.03.2021)
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Journal Article
Fully Phased Sequence of a Diploid Human Genome Determined de Novo from the DNA of a Single Individual
Soifer, Llya, Fong, Nicole L, Yi, Nelda, Ireland, Andrea T, Lam, Irene, Sooknah, Matthew, Paw, Jonathan S, Peluso, Paul, Concepcion, Gregory T, Rank, David, Hastie, Alex R, Jojic, Vladimir, Ruby, J Graham, Botstein, David, Roy, Margaret A
Published in G3 : genes - genomes - genetics (01.09.2020)
Published in G3 : genes - genomes - genetics (01.09.2020)
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Journal Article
EDGE: A Centralized Resource for the Comparison, Analysis, and Distribution of Toxicogenomic Information
Hayes, Kevin R, Vollrath, Aaron L, Zastrow, Gina M, McMillan, Brian J, Craven, Mark, Jovanovich, Stevan, Rank, David R, Penn, Sharon, Walisser, Jacqueline A, Reddy, Janardan K, Thomas, Russell S, Bradfield, Christopher A
Published in Molecular pharmacology (01.04.2005)
Published in Molecular pharmacology (01.04.2005)
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Journal Article
Identification of toxicologically predictive gene sets using cDNA microarrays
Thomas, R S, Rank, D R, Penn, S G, Zastrow, G M, Hayes, K R, Pande, K, Glover, E, Silander, T, Craven, M W, Reddy, J K, Jovanovich, S B, Bradfield, C A
Published in Molecular pharmacology (01.12.2001)
Published in Molecular pharmacology (01.12.2001)
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Journal Article
Airborne spectrophotometry of SN 1987A from 1.7 to 12.6 microns - Time history of the dust continuum and line emission
Wooden, Diane H., Rank, David M., Bregman, Jesse D., Witteborn, Fred C., Tielens, A. G. G. M., Cohen, Martin, Pinto, Philip A., Axelrod, Timothy S.
Published in The Astrophysical journal. Supplement series (01.10.1993)
Published in The Astrophysical journal. Supplement series (01.10.1993)
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Journal Article
Application of Genomics to Toxicology Research
Thomas, Russell S., Rank, David R., Penn, Sharron G., Zastrow, Gina M., Hayes, Kevin R., Hu, Tianhua, Pande, Kalyan, Lewis, Mark, Jovanovich, Stevan B., Bradfield, Christopher A.
Published in Environmental health perspectives (01.12.2002)
Published in Environmental health perspectives (01.12.2002)
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Journal Article
Mining the human genome using microarrays of open reading frames
Rank, David R, Penn, Sharron G, Hanzel, David K, Barker, David L
Published in Nature genetics (01.11.2000)
Published in Nature genetics (01.11.2000)
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Journal Article
Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution
Melters, Daniël P, Bradnam, Keith R, Young, Hugh A, Telis, Natalie, May, Michael R, Ruby, J Graham, Sebra, Robert, Peluso, Paul, Eid, John, Rank, David, Garcia, José Fernando, DeRisi, Joseph L, Smith, Timothy, Tobias, Christian, Ross-Ibarra, Jeffrey, Korf, Ian, Chan, Simon WL
Published in Genome biology (30.01.2013)
Published in Genome biology (30.01.2013)
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Journal Article
Origins of the E. coli Strain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany
Rasko, David A, Webster, Dale R, Sahl, Jason W, Bashir, Ali, Boisen, Nadia, Scheutz, Flemming, Paxinos, Ellen E, Sebra, Robert, Chin, Chen-Shan, Iliopoulos, Dimitris, Klammer, Aaron, Peluso, Paul, Lee, Lawrence, Kislyuk, Andrey O, Bullard, James, Kasarskis, Andrew, Wang, Susanna, Eid, John, Rank, David, Redman, Julia C, Steyert, Susan R, Frimodt-Møller, Jakob, Struve, Carsten, Petersen, Andreas M, Krogfelt, Karen A, Nataro, James P, Schadt, Eric E, Waldor, Matthew K
Published in The New England journal of medicine (25.08.2011)
Published in The New England journal of medicine (25.08.2011)
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Journal Article
A conditional density error model for the statistical analysis of microarray data
LOVE, Brad, RANK, David R, PENN, Sharron G, JENKINS, David A, THOMAS, Russell S
Published in Bioinformatics (Oxford, England) (01.08.2002)
Published in Bioinformatics (Oxford, England) (01.08.2002)
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Journal Article
Sub-microliter DNA sequencing for capillary array electrophoresis
Hadd, Andrew G, Goard, Michael P, Rank, David R, Jovanovich, Stevan B
Published in Journal of Chromatography A (13.10.2000)
Published in Journal of Chromatography A (13.10.2000)
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Conference Proceeding