Database resources of the National Center for Biotechnology Information
Sayers, Eric W, Beck, Jeffrey, Bolton, Evan E, Bourexis, Devon, Brister, James R, Canese, Kathi, Comeau, Donald C, Funk, Kathryn, Kim, Sunghwan, Klimke, William, Marchler-Bauer, Aron, Landrum, Melissa, Lathrop, Stacy, Lu, Zhiyong, Madden, Thomas L, O’Leary, Nuala, Phan, Lon, Rangwala, Sanjida H, Schneider, Valerie A, Skripchenko, Yuri, Wang, Jiyao, Ye, Jian, Trawick, Barton W, Pruitt, Kim D, Sherry, Stephen T
Published in Nucleic Acids Research (08.01.2021)
Published in Nucleic Acids Research (08.01.2021)
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Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV)
Rangwala, Sanjida H, Kuznetsov, Anatoliy, Ananiev, Victor, Asztalos, Andrea, Borodin, Evgeny, Evgeniev, Vladislav, Joukov, Victor, Lotov, Vadim, Pannu, Ravinder, Rudnev, Dmitry, Shkeda, Andrew, Weitz, Eric M, Schneider, Valerie A
Published in Genome research (01.01.2021)
Published in Genome research (01.01.2021)
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Database resources of the National Center for Biotechnology Information in 2023
Sayers, Eric W, Bolton, Evan E, Brister, J Rodney, Canese, Kathi, Chan, Jessica, Comeau, Donald C, Farrell, Catherine M, Feldgarden, Michael, Fine, Anna M, Funk, Kathryn, Hatcher, Eneida, Kannan, Sivakumar, Kelly, Christopher, Kim, Sunghwan, Klimke, William, Landrum, Melissa J, Lathrop, Stacy, Lu, Zhiyong, Madden, Thomas L, Malheiro, Adriana, Marchler-Bauer, Aron, Murphy, Terence D, Phan, Lon, Pujar, Shashikant, Rangwala, Sanjida H, Schneider, Valerie A, Tse, Tony, Wang, Jiyao, Ye, Jian, Trawick, Barton W, Pruitt, Kim D, Sherry, Stephen T
Published in Nucleic acids research (06.01.2023)
Published in Nucleic acids research (06.01.2023)
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The NCBI Comparative Genome Viewer (CGV) is an interactive visualization tool for the analysis of whole-genome eukaryotic alignments
Rangwala, Sanjida H, Rudnev, Dmitry V, Ananiev, Victor V, Oh, Dong-Ha, Asztalos, Andrea, Benica, Barrett, Borodin, Evgeny A, Bouk, Nathan, Evgeniev, Vladislav I, Kodali, Vamsi K, Lotov, Vadim, Mozes, Eyal, Omelchenko, Marina V, Savkina, Sofya, Sukharnikov, Ekaterina, Virothaisakun, Joël, Murphy, Terence D, Pruitt, Kim D, Schneider, Valerie A
Published in PLoS biology (01.05.2024)
Published in PLoS biology (01.05.2024)
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Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
O'Leary, Nuala A, Wright, Mathew W, Brister, J Rodney, Ciufo, Stacy, Haddad, Diana, McVeigh, Rich, Rajput, Bhanu, Robbertse, Barbara, Smith-White, Brian, Ako-Adjei, Danso, Astashyn, Alexander, Badretdin, Azat, Bao, Yiming, Blinkova, Olga, Brover, Vyacheslav, Chetvernin, Vyacheslav, Choi, Jinna, Cox, Eric, Ermolaeva, Olga, Farrell, Catherine M, Goldfarb, Tamara, Gupta, Tripti, Haft, Daniel, Hatcher, Eneida, Hlavina, Wratko, Joardar, Vinita S, Kodali, Vamsi K, Li, Wenjun, Maglott, Donna, Masterson, Patrick, McGarvey, Kelly M, Murphy, Michael R, O'Neill, Kathleen, Pujar, Shashikant, Rangwala, Sanjida H, Rausch, Daniel, Riddick, Lillian D, Schoch, Conrad, Shkeda, Andrei, Storz, Susan S, Sun, Hanzhen, Thibaud-Nissen, Francoise, Tolstoy, Igor, Tully, Raymond E, Vatsan, Anjana R, Wallin, Craig, Webb, David, Wu, Wendy, Landrum, Melissa J, Kimchi, Avi, Tatusova, Tatiana, DiCuccio, Michael, Kitts, Paul, Murphy, Terence D, Pruitt, Kim D
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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RefSeq: an update on mammalian reference sequences
Pruitt, Kim D, Brown, Garth R, Hiatt, Susan M, Thibaud-Nissen, Françoise, Astashyn, Alexander, Ermolaeva, Olga, Farrell, Catherine M, Hart, Jennifer, Landrum, Melissa J, McGarvey, Kelly M, Murphy, Michael R, O'Leary, Nuala A, Pujar, Shashikant, Rajput, Bhanu, Rangwala, Sanjida H, Riddick, Lillian D, Shkeda, Andrei, Sun, Hanzhen, Tamez, Pamela, Tully, Raymond E, Wallin, Craig, Webb, David, Weber, Janet, Wu, Wendy, DiCuccio, Michael, Kitts, Paul, Maglott, Donna R, Murphy, Terence D, Ostell, James M
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Meiotically stable natural epialleles of Sadhu, a novel Arabidopsis retroposon
Rangwala, Sanjida H, Elumalai, Rangasamy, Vanier, Cheryl, Ozkan, Hakan, Galbraith, David W, Richards, Eric J
Published in PLoS genetics (01.03.2006)
Published in PLoS genetics (01.03.2006)
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Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation
Pujar, Shashikant, O'Leary, Nuala A, Farrell, Catherine M, Loveland, Jane E, Mudge, Jonathan M, Wallin, Craig, Girón, Carlos G, Diekhans, Mark, Barnes, If, Bennett, Ruth, Berry, Andrew E, Cox, Eric, Davidson, Claire, Goldfarb, Tamara, Gonzalez, Jose M, Hunt, Toby, Jackson, John, Joardar, Vinita, Kay, Mike P, Kodali, Vamsi K, Martin, Fergal J, McAndrews, Monica, McGarvey, Kelly M, Murphy, Michael, Rajput, Bhanu, Rangwala, Sanjida H, Riddick, Lillian D, Seal, Ruth L, Suner, Marie-Marthe, Webb, David, Zhu, Sophia, Aken, Bronwen L, Bruford, Elspeth A, Bult, Carol J, Frankish, Adam, Murphy, Terence, Pruitt, Kim D
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
RefSeq Functional Elements as experimentally assayed nongenic reference standards and functional interactions in human and mouse
Farrell, Catherine M, Goldfarb, Tamara, Rangwala, Sanjida H, Astashyn, Alexander, Ermolaeva, Olga D, Hem, Vichet, Katz, Kenneth S, Kodali, Vamsi K, Ludwig, Frank, Wallin, Craig L, Pruitt, Kim D, Murphy, Terence D
Published in Genome research (01.01.2022)
Published in Genome research (01.01.2022)
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Journal Article
Mouse genome annotation by the RefSeq project
McGarvey, Kelly M., Goldfarb, Tamara, Cox, Eric, Farrell, Catherine M., Gupta, Tripti, Joardar, Vinita S., Kodali, Vamsi K., Murphy, Michael R., O’Leary, Nuala A., Pujar, Shashikant, Rajput, Bhanu, Rangwala, Sanjida H., Riddick, Lillian D., Webb, David, Wright, Mathew W., Murphy, Terence D., Pruitt, Kim D.
Published in Mammalian genome (01.10.2015)
Published in Mammalian genome (01.10.2015)
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The value-added genome: building and maintaining genomic cytosine methylation landscapes
Rangwala, Sanjida H, Richards, Eric J
Published in Current opinion in genetics & development (01.12.2004)
Published in Current opinion in genetics & development (01.12.2004)
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Journal Article
A joint NCBI and EMBL-EBI transcript set for clinical genomics and research
Morales, Joannella, Pujar, Shashikant, Loveland, Jane E, Astashyn, Alex, Bennett, Ruth, Berry, Andrew, Cox, Eric, Davidson, Claire, Ermolaeva, Olga, Farrell, Catherine M, Fatima, Reham, Gil, Laurent, Goldfarb, Tamara, Gonzalez, Jose M, Haddad, Diana, Hardy, Matthew, Hunt, Toby, Jackson, John, Joardar, Vinita S, Kay, Michael, Kodali, Vamsi K, McGarvey, Kelly M, McMahon, Aoife, Mudge, Jonathan M, Murphy, Daniel N, Murphy, Michael R, Rajput, Bhanu, Rangwala, Sanjida H, Riddick, Lillian D, Thibaud-Nissen, Françoise, Threadgold, Glen, Vatsan, Anjana R, Wallin, Craig, Webb, David, Flicek, Paul, Birney, Ewan, Pruitt, Kim D, Frankish, Adam, Cunningham, Fiona, Murphy, Terence D
Published in Nature (London) (14.04.2022)
Published in Nature (London) (14.04.2022)
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Journal Article
Current status and new features of the Consensus Coding Sequence database
Farrell, Catherine M, O'Leary, Nuala A, Harte, Rachel A, Loveland, Jane E, Wilming, Laurens G, Wallin, Craig, Diekhans, Mark, Barrell, Daniel, Searle, Stephen M J, Aken, Bronwen, Hiatt, Susan M, Frankish, Adam, Suner, Marie-Marthe, Rajput, Bhanu, Steward, Charles A, Brown, Garth R, Bennett, Ruth, Murphy, Michael, Wu, Wendy, Kay, Mike P, Hart, Jennifer, Rajan, Jeena, Weber, Janet, Snow, Catherine, Riddick, Lillian D, Hunt, Toby, Webb, David, Thomas, Mark, Tamez, Pamela, Rangwala, Sanjida H, McGarvey, Kelly M, Pujar, Shashikant, Shkeda, Andrei, Mudge, Jonathan M, Gonzalez, Jose M, Gilbert, James G R, Trevanion, Stephen J, Baertsch, Robert, Harrow, Jennifer L, Hubbard, Tim, Ostell, James M, Haussler, David, Pruitt, Kim D
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
O'Leary, Nuala A., Wright, Mathew W., Brister, J. Rodney, Ciufo, Stacy, Haddad, Diana, McVeigh, Rich, Rajput, Bhanu, Robbertse, Barbara, Smith-White, Brian, Ako-Adjei, Danso, Astashyn, Alexander, Badretdin, Azat, Bao, Yiming, Blinkova, Olga, Brover, Vyacheslav, Chetvernin, Vyacheslav, Choi, Jinna, Cox, Eric, Ermolaeva, Olga, Farrell, Catherine M., Goldfarb, Tamara, Gupta, Tripti, Haft, Daniel, Hatcher, Eneida, Hlavina, Wratko, Joardar, Vinita S., Kodali, Vamsi K., Li, Wenjun, Maglott, Donna, Masterson, Patrick, McGarvey, Kelly M., Murphy, Michael R., O'Neill, Kathleen, Pujar, Shashikant, Rangwala, Sanjida H., Rausch, Daniel, Riddick, Lillian D., Schoch, Conrad, Shkeda, Andrei, Storz, Susan S., Sun, Hanzhen, Thibaud-Nissen, Francoise, Tolstoy, Igor, Tully, Raymond E., Vatsan, Anjana R., Wallin, Craig, Webb, David, Wu, Wendy, Landrum, Melissa J., Kimchi, Avi, Tatusova, Tatiana, DiCuccio, Michael, Kitts, Paul, Murphy, Terence D., Pruitt, Kim D.
Published in Nucleic Acids Research (08.11.2015)
Published in Nucleic Acids Research (08.11.2015)
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Interactive visualization of whole eukaryote genome alignments using NCBI's Comparative Genome Viewer (CGV)
Rangwala, Sanjida H, Rudnev, Dmitry V, Ananiev, Victor V, Asztalos, Andrea, Benica, Barrett, Borodin, Evgeny A, Bouk, Nathan, Evgeniev, Vladislav I, Kodali, Vamsi K, Lotov, Vadim, Mozes, Eyal, Oh, Dong-Ha, Omelchenko, Marina V, Savkina, Sofya, Sukharnikov, Ekaterina, Virothaisakun, Joël, Murphy, Terence D, Pruitt, Kim D, Schneider, Valerie A
Published in bioRxiv : the preprint server for biology (29.11.2023)
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Published in bioRxiv : the preprint server for biology (29.11.2023)
Journal Article
Interactive visualization of whole eukaryote genome alignments using NCBI's Comparative Genome Viewer (CGV)
Sanjida Huseni Rangwala, Rudnev, Dmitry V, Ananiev, Victor V, Asztalos, Andrea, Barrett Benica, Borodin, Evgeny A, Bouk, Nathan, Evgeniev, Vladislav I, Kodali, Vamsi K, Lotov, Vadim, Mozes, Eyal, Dong-Ha, Oh, Omelchenko, Marina V, Savkina, Sofya, Sukharnikov, Ekaterina, Virothaisakun, Joel, Murphy, Terence D, Pruitt, Kim D, Schneider, Valerie A
Published in bioRxiv (29.11.2023)
Published in bioRxiv (29.11.2023)
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