G-Quadruplex loops regulate PARP-1 enzymatic activation
Edwards, Andrea D, Marecki, John C, Byrd, Alicia K, Gao, Jun, Raney, Kevin D
Published in Nucleic acids research (11.01.2021)
Published in Nucleic acids research (11.01.2021)
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Two residues in the DNA binding site of Pif1 helicase are essential for nuclear functions but dispensable for mitochondrial respiratory growth
Gao, Jun, Proffitt, David R, Marecki, John C, Protacio, Reine U, Wahls, Wayne P, Byrd, Alicia K, Raney, Kevin D
Published in Nucleic acids research (16.05.2024)
Published in Nucleic acids research (16.05.2024)
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Eukaryotic Pif1 helicase unwinds G-quadruplex and dsDNA using a conserved wedge
Hong, Zebin, Byrd, Alicia K, Gao, Jun, Das, Poulomi, Tan, Vanessa Qianmin, Malone, Emory G, Osei, Bertha, Marecki, John C, Protacio, Reine U, Wahls, Wayne P, Raney, Kevin D, Song, Haiwei
Published in Nature communications (19.07.2024)
Published in Nature communications (19.07.2024)
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Structural basis for DNA unwinding at forked dsDNA by two coordinating Pif1 helicases
Su, Nannan, Byrd, Alicia K, Bharath, Sakshibeedu R, Yang, Olivia, Jia, Yu, Tang, Xuhua, Ha, Taekjip, Raney, Kevin D, Song, Haiwei
Published in Nature communications (26.11.2019)
Published in Nature communications (26.11.2019)
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G-quadruplex DNA inhibits unwinding activity but promotes liquid-liquid phase separation by the DEAD-box helicase Ded1p
Gao, Jun, Gao, Zhaofeng, Putnam, Andrea A, Byrd, Alicia K, Venus, Sarah L, Marecki, John C, Edwards, Andrea D, Lowe, Haley M, Jankowsky, Eckhard, Raney, Kevin D
Published in Chemical communications (Cambridge, England) (27.07.2021)
Published in Chemical communications (Cambridge, England) (27.07.2021)
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Journal Article
SSB binds to the RecG and PriA helicases in vivo in the absence of DNA
Yu, Cong, Tan, Hui Yin, Choi, Meerim, Stanenas, Adam J., Byrd, Alicia K., D. Raney, Kevin, Cohan, Christopher S., Bianco, Piero R.
Published in Genes to cells : devoted to molecular & cellular mechanisms (01.02.2016)
Published in Genes to cells : devoted to molecular & cellular mechanisms (01.02.2016)
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Yeast Pif1 Accelerates Annealing of Complementary DNA Strands
Ramanagoudr-Bhojappa, Ramanagouda, Byrd, Alicia K., Dahl, Christopher, Raney, Kevin D.
Published in Biochemistry (Easton) (09.12.2014)
Published in Biochemistry (Easton) (09.12.2014)
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Fine tuning of a DNA fork by the RecQ helicase
Byrd, Alicia K., Raney, Kevin D.
Published in Proceedings of the National Academy of Sciences - PNAS (15.12.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (15.12.2015)
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Hepatitis C Virus Nonstructural Protein 5A: Biochemical Characterization of a Novel Structural Class of RNA-Binding Proteins
HWANG, Jungwook, LUYUN HUANG, CORDEK, Daniel G, VAUGHAN, Robert, REYNOLDS, Shelley L, KIHARA, George, RANEY, Kevin D, CHENG KAO, C, CAMERON, Craig E
Published in Journal of Virology (01.12.2010)
Published in Journal of Virology (01.12.2010)
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A CRISPR-based approach for proteomic analysis of a single genomic locus
Waldrip, Zachary J, Byrum, Stephanie D, Storey, Aaron J, Gao, Jun, Byrd, Alicia K, Mackintosh, Samuel G, Wahls, Wayne P, Taverna, Sean D, Raney, Kevin D, Tackett, Alan J
Published in Epigenetics (01.09.2014)
Published in Epigenetics (01.09.2014)
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Hepatitis C Virus Nonstructural Protein 5A (NS5A) Is an RNA-binding Protein
Huang, Luyun, Hwang, Jungwook, Sharma, Suresh D., Hargittai, Michele R.S., Chen, Yingfeng, Arnold, Jamie J., Raney, Kevin D., Cameron, Craig E.
Published in The Journal of biological chemistry (28.10.2005)
Published in The Journal of biological chemistry (28.10.2005)
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Journal Article
Dda Helicase Tightly Couples Translocation on Single-Stranded DNA to Unwinding of Duplex DNA: Dda Is an Optimally Active Helicase
Byrd, Alicia K., Matlock, Dennis L., Bagchi, Debjani, Aarattuthodiyil, Suja, Harrison, David, Croquette, Vincent, Raney, Kevin D.
Published in Journal of molecular biology (13.07.2012)
Published in Journal of molecular biology (13.07.2012)
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Journal Article
The T4 Phage SF1B Helicase Dda Is Structurally Optimized to Perform DNA Strand Separation
He, Xiaoping, Byrd, Alicia K., Yun, Mi-Kyung, Pemble, Charles W., Harrison, David, Yeruva, Laxmi, Dahl, Christopher, Kreuzer, Kenneth N., Raney, Kevin D., White, Stephen W.
Published in Structure (London) (03.07.2012)
Published in Structure (London) (03.07.2012)
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Structure and Mechanisms of SF1 DNA Helicases
Raney, Kevin D, Byrd, Alicia K, Aarattuthodiyil, Suja
Published in Advances in experimental medicine and biology (01.01.2013)
Published in Advances in experimental medicine and biology (01.01.2013)
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Journal Article
Genome-wide Cas9 binding specificity in Saccharomyces cerevisiae
Waldrip, Zachary J, Jenjaroenpun, Piroon, DeYoung, Oktawia, Nookaew, Intawat, Taverna, Sean D, Raney, Kevin D, Tackett, Alan J
Published in PeerJ (San Francisco, CA) (29.07.2020)
Published in PeerJ (San Francisco, CA) (29.07.2020)
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