PanWeb: A web interface for pan-genomic analysis
Pantoja, Yan, Pinheiro, Kenny, Veras, Allan, Araújo, Fabrício, Lopes de Sousa, Ailton, Guimarães, Luis Carlos, Silva, Artur, Ramos, Rommel T J
Published in PloS one (24.05.2017)
Published in PloS one (24.05.2017)
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Journal Article
GapBlaster-A Graphical Gap Filler for Prokaryote Genomes
de Sá, Pablo H C G, Miranda, Fábio, Veras, Adonney, de Melo, Diego Magalhães, Soares, Siomar, Pinheiro, Kenny, Guimarães, Luis, Azevedo, Vasco, Silva, Artur, Ramos, Rommel T J
Published in PloS one (12.05.2016)
Published in PloS one (12.05.2016)
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Journal Article
Assessing the Genotypic Differences between Strains of Corynebacterium pseudotuberculosis biovar equi through Comparative Genomics
Baraúna, Rafael A, Ramos, Rommel T J, Veras, Adonney A O, Pinheiro, Kenny C, Benevides, Leandro J, Viana, Marcus V C, Guimarães, Luís C, Edman, Judy M, Spier, Sharon J, Azevedo, Vasco, Silva, Artur
Published in PloS one (26.01.2017)
Published in PloS one (26.01.2017)
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Journal Article
PIPS: pathogenicity island prediction software
Soares, Siomar C, Abreu, Vinícius A C, Ramos, Rommel T J, Cerdeira, Louise, Silva, Artur, Baumbach, Jan, Trost, Eva, Tauch, Andreas, Hirata, Jr, Raphael, Mattos-Guaraldi, Ana L, Miyoshi, Anderson, Azevedo, Vasco
Published in PloS one (15.02.2012)
Published in PloS one (15.02.2012)
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Journal Article
High-throughput sequencing of black pepper root transcriptome
Gordo, Sheila M C, Pinheiro, Daniel G, Moreira, Edith C O, Rodrigues, Simone M, Poltronieri, Marli C, de Lemos, Oriel F, da Silva, Israel Tojal, Ramos, Rommel T J, Silva, Artur, Schneider, Horacio, Silva, Jr, Wilson A, Sampaio, Iracilda, Darnet, Sylvain
Published in BMC plant biology (17.09.2012)
Published in BMC plant biology (17.09.2012)
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Journal Article
Reference genes for RT-qPCR studies in Corynebacterium pseudotuberculosis identified through analysis of RNA-seq data
Carvalho, Daiane M, de Sá, Pablo H, Castro, Thiago L. P, Carvalho, Rodrigo D, Pinto, Anne, Gil, Danilo J. P, Bagano, Priscilla, Bastos, Bruno, Costa, Lilia F. M, Meyer, Roberto, Silva, Artur, Azevedo, Vasco, Ramos, Rommel T. J, Pacheco, Luis G. C
Published in Antonie van Leeuwenhoek (01.10.2014)
Published in Antonie van Leeuwenhoek (01.10.2014)
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Journal Article
Co-Expression Networks for Causal Gene Identification Based on RNA-Seq Data of Corynebacterium pseudotuberculosis
Franco, Edian F, Rana, Pratip, Queiroz Cavalcante, Ana Lidia, da Silva, Artur Luiz, Cybelle Pinto Gomide, Anne, Carneiro Folador, Adriana R, Azevedo, Vasco, Ghosh, Preetam, T J Ramos, Rommel
Published in Genes (14.07.2020)
Published in Genes (14.07.2020)
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Journal Article
GIPSy: Genomic island prediction software
Soares, Siomar C., Geyik, Hakan, Ramos, Rommel T.J., de Sá, Pablo H.C.G., Barbosa, Eudes G.V., Baumbach, Jan, Figueiredo, Henrique C.P., Miyoshi, Anderson, Tauch, Andreas, Silva, Artur, Azevedo, Vasco
Published in Journal of biotechnology (20.08.2016)
Published in Journal of biotechnology (20.08.2016)
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Journal Article
Evaluation of the Common Molecular Basis in Alzheimer's and Parkinson's Diseases
Rana, Pratip, Franco, Edian F, Rao, Yug, Syed, Khajamoinuddin, Barh, Debmalya, Azevedo, Vasco, Ramos, Rommel T J, Ghosh, Preetam
Published in International journal of molecular sciences (30.07.2019)
Published in International journal of molecular sciences (30.07.2019)
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Journal Article
Pan-genomic analysis of Corynebacterium amycolatum gives insights into molecular mechanisms underpinning the transition to a pathogenic phenotype
Jesus, Hendor N. R., Rocha, Danilo J. P. G., Ramos, Rommel T. J., Silva, Artur, Brenig, Bertram, Góes-Neto, Aristóteles, Costa, Mateus M., Soares, Siomar C., Azevedo, Vasco, Aguiar, Eric R. G. R., Martínez-Martínez, Luiz, Ocampo, Alain, Alibi, Sana, Dorta, Alexis, Pacheco, Luis G. C., Navas, Jesus
Published in Frontiers in microbiology (16.11.2022)
Published in Frontiers in microbiology (16.11.2022)
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Journal Article
The pan-genome of the emerging multidrug-resistant pathogen Corynebacterium striatum
Jesus, Hendor N. R., Ramos, Juliana N., Rocha, Danilo J. P. G., Alves, Daniele A., Silva, Carolina S., Cruz, João V. O., Vieira, Verônica V., Souza, Cassius, Santos, Louisy S., Navas, Jesus, Ramos, Rommel T. J., Azevedo, Vasco, Aguiar, Eric R. G. R., Mattos-Guaraldi, Ana L., Pacheco, Luis G. C.
Published in Functional & integrative genomics (01.03.2023)
Published in Functional & integrative genomics (01.03.2023)
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Journal Article
PhageWeb - Web Interface for Rapid Identification and Characterization of Prophages in Bacterial Genomes
de Sousa, Ailton Lopes, Maués, Dener, Lobato, Amália, Franco, Edian F, Pinheiro, Kenny, Araújo, Fabrício, Pantoja, Yan, da Costa da Silva, Artur Luiz, Morais, Jefferson, Ramos, Rommel T J
Published in Frontiers in genetics (18.12.2018)
Published in Frontiers in genetics (18.12.2018)
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Journal Article
Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain PA01, Isolated from Sheep in Pará, Brazil
Alves, Jorianne T C, Veras, Adonney A O, Cavalcante, Ana Lídia Q, de Sá, Pablo H C G, Dias, Larissa M, Guimarães, Luis C, Morais, Ezequiel, Silva, André G M, Azevedo, Vasco, Ramos, Rommel T J, Silva, Artur, Carneiro, Adriana R
Published in Genome announcements (Washington, DC) (28.01.2016)
Published in Genome announcements (Washington, DC) (28.01.2016)
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Journal Article
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
Mariano, Diego C B, Pereira, Felipe L, Aguiar, Edgar L, Oliveira, Letícia C, Benevides, Leandro, Guimarães, Luís C, Folador, Edson L, Sousa, Thiago J, Ghosh, Preetam, Barh, Debmalya, Figueiredo, Henrique C P, Silva, Artur, Ramos, Rommel T J, Azevedo, Vasco A C
Published in BMC bioinformatics (15.12.2016)
Published in BMC bioinformatics (15.12.2016)
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Journal Article
Genome Sequence of Pseudomonas sp. Strain LAP_36, A Rhizosphere Bacterium Isolated from King George Island, Antarctica
Silveira, Sarah Mederos da, Silva, Sheila da, Macrae, Andrew, Ramos, Rommel T J, Araújo, Fabrício A, Schultz, Júnia, Góes-Neto, Aristóteles, Costa, Mateus Matiuzzi da, Soares, Siomar de Castro, Azevedo, Vasco A C, Aburjaile, Flávia F, Brenig, Bertram, Rosado, Alexandre S, Oliveira, Selma Soares de
Published in Microbiology resource announcements (02.12.2021)
Published in Microbiology resource announcements (02.12.2021)
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Journal Article
The impact of quality filter for RNA-Seq
de Sá, Pablo H.C.G., Veras, Adonney A.O., Carneiro, Adriana R., Pinheiro, Kenny C., Pinto, Anne C., Soares, Siomar C., Schneider, Maria P.C., Azevedo, Vasco, Silva, Artur, Ramos, Rommel T.J.
Published in Gene (01.06.2015)
Published in Gene (01.06.2015)
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Journal Article
Omics profiles used to evaluate the gene expression of Exiguobacterium antarcticum B7 during cold adaptation
Dall'Agnol, Hivana P M B, Baraúna, Rafael A, de Sá, Pablo H C G, Ramos, Rommel T J, Nóbrega, Felipe, Nunes, Catarina I P, das Graças, Diego A, Carneiro, Adriana R, Santos, Daniel M, Pimenta, Adriano M C, Carepo, Marta S P, Azevedo, Vasco, Pellizari, Vivian H, Schneider, Maria P C, Silva, Artur
Published in BMC genomics (18.11.2014)
Published in BMC genomics (18.11.2014)
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Journal Article
Complete Genome Sequences of Corynebacterium pseudotuberculosis Strains 3/99-5 and 42/02-A, Isolated from Sheep in Scotland and Australia, Respectively
PETHICK, Florence E, LAINSON, Alex F, BARBOSA, Maria S, PINTO, Anne C, DOS SANTOS, Anderson R, SOARES, Siomar C, ALMEIDA, Sintia S, GUIMARAES, Luis C, ABURJAILE, Flavia F, ABREU, Vinicius A. C, RIBEIRO, Dayana, FIAUX, Karina K, YAGA, Raja, DINIZ, Carlos A. A, BARBOSA, Eudes G. V, PEREIRA, Ulisses P, HASSAN, Syed S, ALI, Amjad, BAKHTIAR, Syeda M, DORELLA, Fernanda A, CARNEIRO, Adriana R, RAMOS, Rommel T. J, ROCHA, Flavia S, FLOCKHART, Allen, SCHNEIDER, Maria P. C, MIYOSHI, Anderson, AZEVEDO, Vasco, FONTAINE, Michael C, SMITH, David G. E, DONACHIE, Willie, CERDEIRA, Louise T, SILVA, Artur, BOL, Erik, LOPES, Thiago S
Published in Journal of Bacteriology (01.09.2012)
Published in Journal of Bacteriology (01.09.2012)
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