Succinate Produced by Intestinal Microbes Promotes Specification of Tuft Cells to Suppress Ileal Inflammation
Banerjee, Amrita, Herring, Charles A., Chen, Bob, Kim, Hyeyon, Simmons, Alan J., Southard-Smith, Austin N., Allaman, Margaret M., White, James R., Macedonia, Mary C., Mckinley, Eliot T., Ramirez-Solano, Marisol A., Scoville, Elizabeth A., Liu, Qi, Wilson, Keith T., Coffey, Robert J., Washington, M. Kay, Goettel, Jeremy A., Lau, Ken S.
Published in Gastroenterology (New York, N.Y. 1943) (01.12.2020)
Published in Gastroenterology (New York, N.Y. 1943) (01.12.2020)
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Journal Article
Beta cell secretion of miR-375 to HDL is inversely associated with insulin secretion
Sedgeman, Leslie R., Beysen, Carine, Ramirez Solano, Marisol A., Michell, Danielle L., Sheng, Quanhu, Zhao, Shilin, Turner, Scott, Linton, MacRae F., Vickers, Kasey C.
Published in Scientific reports (07.03.2019)
Published in Scientific reports (07.03.2019)
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Journal Article
Dual indexed library design enables compatibility of in-Drop single-cell RNA-sequencing with exAMP chemistry sequencing platforms
Southard-Smith, Austin N, Simmons, Alan J, Chen, Bob, Jones, Angela L, Ramirez Solano, Marisol A, Vega, Paige N, Scurrah, Cherie' R, Zhao, Yue, Brenan, Michael J, Xuan, Jiekun, Shrubsole, Martha J, Porter, Ely B, Chen, Xi, Brenan, Colin J H, Liu, Qi, Quigley, Lauren N M, Lau, Ken S
Published in BMC genomics (02.07.2020)
Published in BMC genomics (02.07.2020)
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Journal Article
Bioinformatic analysis of endogenous and exogenous small RNAs on lipoproteins
Allen, Ryan M., Zhao, Shilin, Ramirez Solano, Marisol A., Zhu, Wanying, Michell, Danielle L., Wang, Yuhuan, Shyr, Yu, Sethupathy, Praveen, Linton, MacRae F., Graf, Gregory A., Sheng, Quanhu, Vickers, Kasey C.
Published in Journal of extracellular vesicles (01.12.2018)
Published in Journal of extracellular vesicles (01.12.2018)
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Journal Article
Dual inhibition of endothelial miR-92a-3p and miR-489-3p reduces renal injury-associated atherosclerosis
Wiese, Carrie B., Zhong, Jianyong, Xu, Zhi-Qi, Zhang, Youmin, Ramirez Solano, Marisol A., Zhu, Wanying, Linton, MacRae F., Sheng, Quanhu, Kon, Valentina, Vickers, Kasey C.
Published in Atherosclerosis (01.03.2019)
Published in Atherosclerosis (01.03.2019)
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Journal Article
Intestinal bile acid sequestration improves glucose control by stimulating hepatic miR-182-5p in type 2 diabetes
Sedgeman, Leslie R, Beysen, Carine, Allen, Ryan M, Ramirez Solano, Marisol A, Turner, Scott M, Vickers, Kasey C
Published in American journal of physiology: Gastrointestinal and liver physiology (01.11.2018)
Published in American journal of physiology: Gastrointestinal and liver physiology (01.11.2018)
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Journal Article
Profile of Podocyte Translatome During Development of Type 2 and Type 1 Diabetic Nephropathy Using Podocyte-Specific TRAP mRNA RNA-seq
Wang, Yinqiu, Niu, Aolei, Pan, Yu, Cao, Shirong, Terker, Andrew S, Wang, Suwan, Fan, Xiaofeng, Toth, Cynthia L, Ramirez Solano, Marisol A, Michell, Danielle L, Contreras, Danielle, Allen, Ryan M, Zhu, Wanying, Sheng, Quanhu, Fogo, Agnes B, Vickers, Kasey C, Zhang, Ming-Zhi, Harris, Raymond C
Published in Diabetes (New York, N.Y.) (01.10.2021)
Published in Diabetes (New York, N.Y.) (01.10.2021)
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Journal Article
Processing single-cell RNA-seq data for dimension reduction-based analyses using open-source tools
Chen, Bob, Ramirez-Solano, Marisol A., Heiser, Cody N., Liu, Qi, Lau, Ken S.
Published in STAR protocols (18.06.2021)
Published in STAR protocols (18.06.2021)
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Journal Article
Molecular cartography uncovers evolutionary and microenvironmental dynamics in sporadic colorectal tumors
Heiser, Cody N., Simmons, Alan J., Revetta, Frank, McKinley, Eliot T., Ramirez-Solano, Marisol A., Wang, Jiawei, Kaur, Harsimran, Shao, Justin, Ayers, Gregory D., Wang, Yu, Glass, Sarah E., Tasneem, Naila, Chen, Zhengyi, Qin, Yan, Kim, William, Rolong, Andrea, Chen, Bob, Vega, Paige N., Drewes, Julia L., Markham, Nicholas O., Saleh, Nabil, Nikolos, Fotis, Vandekar, Simon, Jones, Angela L., Washington, M. Kay, Roland, Joseph T., Chan, Keith S., Schürpf, Thomas, Sears, Cynthia L., Liu, Qi, Shrubsole, Martha J., Coffey, Robert J., Lau, Ken S.
Published in Cell (07.12.2023)
Published in Cell (07.12.2023)
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Journal Article
Temporal recording of mammalian development and precancer
Islam, Mirazul, Yang, Yilin, Simmons, Alan J., Shah, Vishal M., Musale, Krushna Pavan, Xu, Yanwen, Tasneem, Naila, Chen, Zhengyi, Trinh, Linh T., Molina, Paola, Ramirez-Solano, Marisol A., Sadien, Iannish D., Dou, Jinzhuang, Rolong, Andrea, Chen, Ken, Magnuson, Mark A., Rathmell, Jeffrey C., Macara, Ian G., Winton, Douglas J., Liu, Qi, Zafar, Hamim, Kalhor, Reza, Church, George M., Shrubsole, Martha J., Coffey, Robert J., Lau, Ken S.
Published in Nature (London) (31.10.2024)
Published in Nature (London) (31.10.2024)
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Journal Article
A Specialized Epithelial Cell Type Regulating Mucosal Immunity and Driving Human Crohn's Disease
Li, Jia, Simmons, Alan J, Chiron, Sophie, Ramirez-Solano, Marisol A, Tasneem, Naila, Kaur, Harsimran, Xu, Yanwen, Revetta, Frank, Vega, Paige N, Bao, Shunxing, Cui, Can, Tyree, Regina N, Raber, Larry W, Conner, Anna N, Beaulieu, Dawn B, Dalal, Robin L, Horst, Sara N, Pabla, Baldeep S, Huo, Yuankai, Landman, Bennett A, Roland, Joseph T, Scoville, Elizabeth A, Schwartz, David A, Washington, M Kay, Shyr, Yu, Wilson, Keith T, Coburn, Lori A, Lau, Ken S, Liu, Qi
Published in bioRxiv (02.10.2023)
Published in bioRxiv (02.10.2023)
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Journal Article
Abstract 229: Mucosal Immunity Shapes the Lipoprotein Small-RNA Fingerprint from Commensal, Dietary and Environmental Microbiota
Allen, Ryan M, Ramirez-Solano, Marisol A, Zhu, Wanying, Zhao, Shilin, Sheng, Quanhu, Vickers, Kasey, Linton, MacRae
Published in Arteriosclerosis, thrombosis, and vascular biology (01.05.2017)
Published in Arteriosclerosis, thrombosis, and vascular biology (01.05.2017)
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Journal Article
Abstract 576: LDL-Trafficked Small RNAs Promote Atherosclerosis through TLR Signaling in Macrophages
Allen, Ryan M, Zhao, Shilin, Ramirez-Solano, Marisol A, Zhu, Wanying, Richmond, Bradley W, Blackwell, Timothy, Sheng, Quanhu, Vickers, Kasey C
Published in Arteriosclerosis, thrombosis, and vascular biology (01.05.2018)
Published in Arteriosclerosis, thrombosis, and vascular biology (01.05.2018)
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Journal Article
Temporal recording of mammalian development and precancer
Islam, Mirazul, Yang, Yilin, Simmons, Alan J, Shah, Vishal M, Pavan, Musale Krushna, Xu, Yanwen, Tasneem, Naila, Chen, Zhengyi, Trinh, Linh T, Molina, Paola, Ramirez-Solano, Marisol A, Sadien, Iannish, Dou, Jinzhuang, Chen, Ken, Magnuson, Mark A, Rathmell, Jeffrey C, Macara, Ian G, Winton, Douglas, Liu, Qi, Zafar, Hamim, Kalhor, Reza, Church, George M, Shrubsole, Martha J, Coffey, Robert J, Lau, Ken S
Published in bioRxiv : the preprint server for biology (19.12.2023)
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Published in bioRxiv : the preprint server for biology (19.12.2023)
Journal Article
Temporal recording of mammalian development and precancer
Islam, Mirazul, Yang, Yilin, Simmons, Alan J, Shah, Vishal M, Pavan, Musale Krushna, Xu, Yanwen, Tasneem, Naila, Chen, Zhengyi, Trinh, Linh T, Molina, Paola, Ramirez-Solano, Marisol A, Sadien, Iannish, Dou, Jinzhuang, Chen, Ken, Magnuson, Mark A, Rathmell, Jeffrey C, Macara, Ian G, Winton, Douglas, Liu, Qi, Zafar, Hamim, Kalhor, Reza, Church, George M, Shrubsole, Martha J, Coffey, Robert J, Lau, Ken S
Published in bioRxiv (19.12.2023)
Published in bioRxiv (19.12.2023)
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Journal Article
Molecular cartography uncovers evolutionary and microenvironmental dynamics in sporadic colorectal tumors
Heiser, Cody N, Simmons, Alan J, Revetta, Frank, Mckinley, Eliot T, Ramirez-Solano, Marisol A, Wang, Jiawei, Shao, Justin, Ayers, Gregory D, Wang, Yu, Glass, Sarah E, Kaur, Harsimran, Rolong, Andrea, Chen, Bob, Vega, Paige N, Drewes, Julia L, Saleh, Nabil, Vandekar, Simon, Jones, Angela L, Washington, M Kay, Roland, Joseph T, Sears, Cynthia L, Liu, Qi, Shrubsole, Martha J, Coffey, Robert J, Lau, Ken S
Published in bioRxiv (12.03.2023)
Published in bioRxiv (12.03.2023)
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Paper
Commensal-derived succinate enhances tuft cell specification and suppresses ileal inflammation
Banerjee, Amrita, Herring, Charles A, Kim, Hyeyon, Chen, Bob, Simmons, Alan J, Southard-Smith, Austin N, White, James R, Ramirez Solano, Marisol A, Scoville, Elizabeth A, Liu, Qi, Washington, Mary Kay, Lau, Ken S
Published in bioRxiv (20.09.2019)
Published in bioRxiv (20.09.2019)
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Paper
Human colorectal pre-cancer atlas identifies distinct molecular programs underlying two major subclasses of pre-malignant tumors
Chen, Bob, Mckinley, Eliot T, Simmons, Alan J, Ramirez-Solano, Marisol A, Zhu, Xiangzhu, Southard-Smith, Austin N, Markham, Nicholas O, Sheng, Quanhu, Drewes, Julia L, Xu, Yanwen, Heiser, Cody N, Zhou, Yuan, Revetta, Frank, Berry, Lynne, Zheng, Wei, Washington, M Kay, Cai, Qiuyin, Sears, Cynthia L, Goldenring, James R, Franklin, Jeffrey L, Vandekar, Simon, Roland, Joseph T, Su, Timothy, Huh, Won Jae, Liu, Qi, Coffey, Robert J, Shrubsole, Martha J, Lau, Ken
Published in bioRxiv (13.01.2021)
Published in bioRxiv (13.01.2021)
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Paper
Dual indexed design of in-Drop single-cell RNA-seq libraries improves sequencing quality and throughput
Southard-Smith, Austin N, Simmons, Alan J, Chen, Bob, Jones, Angela L, Ramirez-Solano, Marisol A, Vega, Paige N, Scurrah, Cherie' R, Zhao, Yue, Brenan, Michael J, Jiekun Xuan, Porter, Ely B, Chen, Xi, Brenan, Colin Jh, Liu, Qi, Quigley, Lauren Nm, Lau, Ken N
Published in bioRxiv (08.11.2019)
Published in bioRxiv (08.11.2019)
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