Expanding the Boundaries of RNA Sequencing as a Diagnostic Tool for Rare Mendelian Disease
Gonorazky, Hernan D., Naumenko, Sergey, Ramani, Arun K., Nelakuditi, Viswateja, Mashouri, Pouria, Wang, Peiqui, Kao, Dennis, Ohri, Krish, Viththiyapaskaran, Senthuri, Tarnopolsky, Mark A., Mathews, Katherine D., Moore, Steven A., Osorio, Andres N., Villanova, David, Kemaladewi, Dwi U., Cohn, Ronald D., Brudno, Michael, Dowling, James J.
Published in American journal of human genetics (07.03.2019)
Published in American journal of human genetics (07.03.2019)
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Journal Article
Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation
Ip, Joanna Y, Schmidt, Dominic, Pan, Qun, Ramani, Arun K, Fraser, Andrew G, Odom, Duncan T, Blencowe, Benjamin J
Published in Genome research (01.03.2011)
Published in Genome research (01.03.2011)
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Journal Article
A Pair of RNA-Binding Proteins Controls Networks of Splicing Events Contributing to Specialization of Neural Cell Types
Norris, Adam D., Gao, Shangbang, Norris, Megan L., Ray, Debashish, Ramani, Arun K., Fraser, Andrew G., Morris, Quaid, Hughes, Timothy R., Zhen, Mei, Calarco, John A.
Published in Molecular cell (19.06.2014)
Published in Molecular cell (19.06.2014)
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Journal Article
Genome-wide analysis of alternative splicing in Caenorhabditis elegans
Ramani, Arun K, Calarco, John A, Pan, Qun, Mavandadi, Sepand, Wang, Ying, Nelson, Andrew C, Lee, Leo J, Morris, Quaid, Blencowe, Benjamin J, Zhen, Mei, Fraser, Andrew G
Published in Genome research (01.02.2011)
Published in Genome research (01.02.2011)
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Journal Article
Control of Long-Term Synaptic Potentiation and Learning by Alternative Splicing of the NMDA Receptor Subunit GluN1
Sengar, Ameet S., Li, Hongbin, Zhang, Wenbo, Leung, Celeste, Ramani, Arun K., Saw, Ner Mu, Wang, Yongqian, Tu, YuShan, Ross, P. Joel, Scherer, Stephen W., Ellis, James, Brudno, Michael, Jia, Zhengping, Salter, Michael W.
Published in Cell reports (Cambridge) (24.12.2019)
Published in Cell reports (Cambridge) (24.12.2019)
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Journal Article
The Majority of Animal Genes Are Required for Wild-Type Fitness
Ramani, Arun K., Chuluunbaatar, Tungalag, Verster, Adrian J., Na, Hong, Vu, Victoria, Pelte, Nadège, Wannissorn, Nattha, Jiao, Alan, Fraser, Andrew G.
Published in Cell (17.02.2012)
Published in Cell (17.02.2012)
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Journal Article
Protein interaction networks from yeast to human
Bork, Peer, Jensen, Lars J, von Mering, Christian, Ramani, Arun K, Lee, Insuk, Marcotte, Edward M
Published in Current opinion in structural biology (01.06.2004)
Published in Current opinion in structural biology (01.06.2004)
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Journal Article
Evaluation of single-cell RNA-seq clustering algorithms on cancer tumor datasets
Mahalanabis, Alaina, Turinsky, Andrei L., Husić, Mia, Christensen, Erik, Luo, Ping, Naidas, Alaine, Brudno, Michael, Pugh, Trevor, Ramani, Arun K., Shooshtari, Parisa
Published in Computational and structural biotechnology journal (01.01.2022)
Published in Computational and structural biotechnology journal (01.01.2022)
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Journal Article
C. elegans SUP-46, an HNRNPM family RNA-binding protein that prevents paternally-mediated epigenetic sterility
Johnston, Wendy L, Krizus, Aldis, Ramani, Arun K, Dunham, Wade, Youn, Ji Young, Fraser, Andrew G, Gingras, Anne-Claude, Dennis, James W
Published in BMC biology (17.07.2017)
Published in BMC biology (17.07.2017)
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Journal Article
A Machine Learning Approach to Identifying Causal Monogenic Variants in Inflammatory Bowel Disease
Mulder, Daniel J., Khalouei, Sam, Li, Michael, Warner, Neil, Gonzaga-Jauregui, Claudia, Benchimol, Eric I., Church, Peter C., Walters, Thomas D., Ramani, Arun K., Griffiths, Anne M., Ricciuto, Amanda, Muise, Aleixo M.
Published in Gastro hep advances (2022)
Published in Gastro hep advances (2022)
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Journal Article
Prevalence and Clinical Features of Inflammatory Bowel Diseases Associated With Monogenic Variants, Identified by Whole-Exome Sequencing in 1000 Children at a Single Center
Crowley, Eileen, Warner, Neil, Pan, Jie, Khalouei, Sam, Elkadri, Abdul, Fiedler, Karoline, Foong, Justin, Turinsky, Andrei L., Bronte-Tinkew, Dana, Zhang, Shiqi, Hu, Jamie, Tian, David, Li, Dalin, Horowitz, Julie, Siddiqui, Iram, Upton, Julia, Roifman, Chaim M., Church, Peter C., Wall, Donna A., Ramani, Arun K., Kotlarz, Daniel, Klein, Christoph, Uhlig, Holm, Snapper, Scott B., Gonzaga-Jauregui, Claudia, Paterson, Andrew D., McGovern, Dermot P.B., Brudno, Michael, Walters, Thomas D., Griffiths, Anne M., Muise, Aleixo M.
Published in Gastroenterology (New York, N.Y. 1943) (01.06.2020)
Published in Gastroenterology (New York, N.Y. 1943) (01.06.2020)
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Journal Article
Clinical Implementation of MetaFusion for Accurate Cancer-Driving Fusion Detection from RNA Sequencing
Apostolides, Michael, Li, Michael, Arnoldo, Anthony, Ku, Michelle, Husić, Mia, Ramani, Arun K., Brudno, Michael, Turinsky, Andrei, Hawkins, Cynthia, Siddaway, Robert
Published in The Journal of molecular diagnostics : JMD (01.12.2023)
Published in The Journal of molecular diagnostics : JMD (01.12.2023)
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Journal Article
Identification of complex genomic rearrangements in cancers using CouGaR
Dzamba, Misko, Ramani, Arun K, Buczkowicz, Pawel, Jiang, Yue, Yu, Man, Hawkins, Cynthia, Brudno, Michael
Published in Genome research (01.01.2017)
Published in Genome research (01.01.2017)
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Journal Article
Conserved transcriptional programming across sex and species after peripheral nerve injury predicts treatments for neuropathic pain
Ghazisaeidi, Shahrzad, Muley, Milind M, Tu, YuShan, Finn, David P, Kolahdouzan, Mahshad, Pitcher, Graham M, Kim, Doyeon, Sengar, Ameet S, Ramani, Arun K, Brudno, Michael, Salter, Michael W
Published in British journal of pharmacology (01.11.2023)
Published in British journal of pharmacology (01.11.2023)
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Journal Article
Expanding the Boundaries of RNA Sequencing as a Diagnostic Tool for Rare Mendelian Disease
Gonorazky, Hernan D., Naumenko, Sergey, Ramani, Arun K., Nelakuditi, Viswateja, Mashouri, Pouria, Wang, Peiqui, Kao, Dennis, Ohri, Krish, Viththiyapaskaran, Senthuri, Tarnopolsky, Mark A., Mathews, Katherine D., Moore, Steven A., Osorio, Andres N., Villanova, David, Kemaladewi, Dwi U., Cohn, Ronald D., Brudno, Michael, Dowling, James J.
Published in American journal of human genetics (02.05.2019)
Published in American journal of human genetics (02.05.2019)
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Journal Article
Basophil activation test shows high accuracy in the diagnosis of peanut and tree nut allergy: The Markers of Nut Allergy Study
Duan, Lucy, Celik, Alper, Hoang, Jennifer A., Schmidthaler, Klara, So, Delvin, Yin, Xiaojun, Ditlof, Christina M., Ponce, Marta, Upton, Julia E.M., Lee, Jean‐Soo, Hung, Lisa, Breiteneder, Heimo, Palladino, Chiara, Atkinson, Adelle R., Kim, Vy H.D., Berenjy, Alireza, Asper, Maria, Hummel, David, Wong, Samantha, Alexanian‐Farr, Mara, Magder, Ahuva, Chinthrajah, Sharon R., Mukai, Kaori, Tsai, Mindy, Nadeau, Kari, Galli, Stephen J., Ramani, Arun K., Szepfalusi, Zsolt, Eiwegger, Thomas
Published in Allergy (Copenhagen) (01.06.2021)
Published in Allergy (Copenhagen) (01.06.2021)
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Journal Article
Erratum: Spatial genomic heterogeneity in diffuse intrinsic pontine and midline high-grade glioma: implications for diagnostic biopsy and targeted therapeutics
Hoffman, Lindsey M, DeWire, Mariko, Ryall, Scott, Buczkowicz, Pawel, Leach, James, Miles, Lili, Ramani, Arun K, Brudno, Michael, Kumar, Shiva Senthil, Drissi, Rachid, Dexheimer, Phillip, Salloum, Ralph, Chow, Lionel, Hummel, Trent, Stevenson, Charles, Lu, Q Richard, Jones, Blaise, Witte, David, Aronow, Bruce, Hawkins, Cynthia E, Fouladi, Maryam
Published in Acta neuropathologica communications (09.02.2016)
Published in Acta neuropathologica communications (09.02.2016)
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