Accurate estimation of cell composition in bulk expression through robust integration of single-cell information
Jew, Brandon, Alvarez, Marcus, Rahmani, Elior, Miao, Zong, Ko, Arthur, Garske, Kristina M, Sul, Jae Hoon, Pietiläinen, Kirsi H, Pajukanta, Päivi, Halperin, Eran
Published in Nature communications (24.04.2020)
Published in Nature communications (24.04.2020)
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Journal Article
Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies
Rahmani, Elior, Zaitlen, Noah, Baran, Yael, Eng, Celeste, Hu, Donglei, Galanter, Joshua, Oh, Sam, Burchard, Esteban G, Eskin, Eleazar, Zou, James, Halperin, Eran
Published in Nature methods (01.05.2016)
Published in Nature methods (01.05.2016)
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Journal Article
Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology
Rahmani, Elior, Schweiger, Regev, Rhead, Brooke, Criswell, Lindsey A, Barcellos, Lisa F, Eskin, Eleazar, Rosset, Saharon, Sankararaman, Sriram, Halperin, Eran
Published in Nature communications (31.07.2019)
Published in Nature communications (31.07.2019)
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Journal Article
Enhancing droplet-based single-nucleus RNA-seq resolution using the semi-supervised machine learning classifier DIEM
Alvarez, Marcus, Rahmani, Elior, Jew, Brandon, Garske, Kristina M, Miao, Zong, Benhammou, Jihane N, Ye, Chun Jimmie, Pisegna, Joseph R, Pietiläinen, Kirsi H, Halperin, Eran, Pajukanta, Päivi
Published in Scientific reports (03.07.2020)
Published in Scientific reports (03.07.2020)
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Journal Article
BayesCCE: a Bayesian framework for estimating cell-type composition from DNA methylation without the need for methylation reference
Rahmani, Elior, Schweiger, Regev, Shenhav, Liat, Wingert, Theodora, Hofer, Ira, Gabel, Eilon, Eskin, Eleazar, Halperin, Eran
Published in Genome Biology (21.09.2018)
Published in Genome Biology (21.09.2018)
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Journal Article
A machine learning algorithm to increase COVID-19 inpatient diagnostic capacity
Goodman-Meza, David, Rudas, Akos, Chiang, Jeffrey N, Adamson, Paul C, Ebinger, Joseph, Sun, Nancy, Botting, Patrick, Fulcher, Jennifer A, Saab, Faysal G, Brook, Rachel, Eskin, Eleazar, An, Ulzee, Kordi, Misagh, Jew, Brandon, Balliu, Brunilda, Chen, Zeyuan, Hill, Brian L, Rahmani, Elior, Halperin, Eran, Manuel, Vladimir
Published in PloS one (22.09.2020)
Published in PloS one (22.09.2020)
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Journal Article
The causal effect of obesity on prediabetes and insulin resistance reveals the important role of adipose tissue in insulin resistance
Miao, Zong, Alvarez, Marcus, Ko, Arthur, Bhagat, Yash, Rahmani, Elior, Jew, Brandon, Heinonen, Sini, Muñoz-Hernandez, Linda Liliana, Herrera-Hernandez, Miguel, Aguilar-Salinas, Carlos, Tusie-Luna, Teresa, Mohlke, Karen L, Laakso, Markku, Pietiläinen, Kirsi H, Halperin, Eran, Pajukanta, Päivi
Published in PLoS genetics (14.09.2020)
Published in PLoS genetics (14.09.2020)
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Journal Article
Publisher Correction: Accurate estimation of cell composition in bulk expression through robust integration of single-cell information
Jew, Brandon, Alvarez, Marcus, Rahmani, Elior, Miao, Zong, Ko, Arthur, Garske, Kristina M., Sul, Jae Hoon, Pietiläinen, Kirsi H., Pajukanta, Päivi, Halperin, Eran
Published in Nature communications (03.06.2020)
Published in Nature communications (03.06.2020)
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Journal Article
Genome wide association study and genomic risk prediction of age related macular degeneration in Israel
Grunin, Michelle, Triffon, Daria, Beykin, Gala, Rahmani, Elior, Schweiger, Regev, Tiosano, Liran, Khateb, Samer, Hagbi-Levi, Shira, Rinsky, Batya, Munitz, Refael, Winkler, Thomas W, Heid, Iris M, Halperin, Eran, Carmi, Shai, Chowers, Itay
Published in Scientific reports (06.06.2024)
Published in Scientific reports (06.06.2024)
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Journal Article
Genetic association analysis of human median voice pitch identifies a common locus for tonal and non-tonal languages
Di, Yazheng, Mefford, Joel, Rahmani, Elior, Wang, Jinhan, Ravi, Vijay, Gorla, Aditya, Alwan, Abeer, Zhu, Tingshao, Flint, Jonathan
Published in Communications biology (07.05.2024)
Published in Communications biology (07.05.2024)
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Journal Article
Detecting heritable phenotypes without a model using fast permutation testing for heritability and set-tests
Schweiger, Regev, Fisher, Eyal, Weissbrod, Omer, Rahmani, Elior, Müller-Nurasyid, Martina, Kunze, Sonja, Gieger, Christian, Waldenberger, Melanie, Rosset, Saharon, Halperin, Eran
Published in Nature communications (21.11.2018)
Published in Nature communications (21.11.2018)
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Journal Article
Association testing of bisulfite-sequencing methylation data via a Laplace approximation
Weissbrod, Omer, Rahmani, Elior, Schweiger, Regev, Rosset, Saharon, Halperin, Eran
Published in Bioinformatics (Oxford, England) (15.07.2017)
Published in Bioinformatics (Oxford, England) (15.07.2017)
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Journal Article
Correcting for cell-type heterogeneity in DNA methylation: a comprehensive evaluation
Rahmani, Elior, Zaitlen, Noah, Baran, Yael, Eng, Celeste, Hu, Donglei, Galanter, Joshua, Oh, Sam, Burchard, Esteban G, Eskin, Eleazar, Zou, James, Halperin, Eran
Published in Nature methods (01.03.2017)
Published in Nature methods (01.03.2017)
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Journal Article
Association of a Variant in VWA3A with Response to Anti-Vascular Endothelial Growth Factor Treatment in Neovascular AMD
Grunin, Michelle, Beykin, Gala, Rahmani, Elior, Schweiger, Regev, Barel, Gal, Hagbi-Levi, Shira, Elbaz-Hayoun, Sarah, Rinsky, Batya, Ganiel, Michal, Carmi, Shai, Halperin, Eran, Chowers, Itay
Published in Investigative ophthalmology & visual science (01.02.2020)
Published in Investigative ophthalmology & visual science (01.02.2020)
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Journal Article
RL-SKAT: An Exact and Efficient Score Test for Heritability and Set Tests
Schweiger, Regev, Weissbrod, Omer, Rahmani, Elior, Müller-Nurasyid, Martina, Kunze, Sonja, Gieger, Christian, Waldenberger, Melanie, Rosset, Saharon, Halperin, Eran
Published in Genetics (Austin) (01.12.2017)
Published in Genetics (Austin) (01.12.2017)
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Journal Article
Rheumatoid Arthritis Naive T Cells Share Hypermethylation Sites With Synoviocytes
Rhead, Brooke, Holingue, Calliope, Cole, Michael, Shao, Xiaorong, Quach, Hong L., Quach, Diana, Shah, Khooshbu, Sinclair, Elizabeth, Graf, John, Link, Thomas, Harrison, Ruby, Rahmani, Elior, Halperin, Eran, Wang, Wei, Firestein, Gary S., Barcellos, Lisa F., Criswell, Lindsey A.
Published in Arthritis & rheumatology (Hoboken, N.J.) (01.03.2017)
Published in Arthritis & rheumatology (Hoboken, N.J.) (01.03.2017)
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