SARS-CoV-2 genomes from Saudi Arabia implicate nucleocapsid mutations in host response and increased viral load
Mourier, Tobias, Shuaib, Muhammad, Hala, Sharif, Mfarrej, Sara, Alofi, Fadwa, Naeem, Raeece, Alsomali, Afrah, Jorgensen, David, Subudhi, Amit Kumar, Ben Rached, Fathia, Guan, Qingtian, Salunke, Rahul P., Ooi, Amanda, Esau, Luke, Douvropoulou, Olga, Nugmanova, Raushan, Perumal, Sadhasivam, Zhang, Huoming, Rajan, Issaac, Al-Omari, Awad, Salih, Samer, Shamsan, Abbas, Al Mutair, Abbas, Taha, Jumana, Alahmadi, Abdulaziz, Khotani, Nashwa, Alhamss, Abdelrahman, Mahmoud, Ahmed, Alquthami, Khaled, Dageeg, Abdullah, Khogeer, Asim, Hashem, Anwar M., Moraga, Paula, Volz, Eric, Almontashiri, Naif, Pain, Arnab
Published in Nature communications (01.02.2022)
Published in Nature communications (01.02.2022)
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Journal Article
A genetic barcode of SARS-CoV-2 for monitoring global distribution of different clades during the COVID-19 pandemic
Guan, Qingtian, Sadykov, Mukhtar, Mfarrej, Sara, Hala, Sharif, Naeem, Raeece, Nugmanova, Raushan, Al-Omari, Awad, Salih, Samer, Mutair, Abbas Al, Carr, Michael J., Hall, William W., Arold, Stefan T., Pain, Arnab
Published in International journal of infectious diseases (01.11.2020)
Published in International journal of infectious diseases (01.11.2020)
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Journal Article
Enteric Infections Circulating during Hajj Seasons, 2011-2013
Abd El Ghany, Moataz, Alsomali, Mona, Almasri, Malak, Padron Regalado, Eriko, Naeem, Raeece, Tukestani, AbdulHafeez, Asiri, Abdullah, Hill-Cawthorne, Grant A, Pain, Arnab, Memish, Ziad A
Published in Emerging infectious diseases (01.10.2017)
Published in Emerging infectious diseases (01.10.2017)
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Integrated transcriptomic and proteomic analysis of pathogenic mycobacteria and their esx-1 mutants reveal secretion-dependent regulation of ESX-1 substrates and WhiB6 as a transcriptional regulator
Abdallah, Abdallah M, Weerdenburg, Eveline M, Guan, Qingtian, Ummels, Roy, Borggreve, Stephanie, Adroub, Sabir A, Malas, Tareq B, Naeem, Raeece, Zhang, Huoming, Otto, Thomas D, Bitter, Wilbert, Pain, Arnab
Published in PloS one (23.01.2019)
Published in PloS one (23.01.2019)
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Genome-wide transposon mutagenesis analysis of Burkholderia pseudomallei reveals essential genes for in vitro and in vivo survival
Wong, Yee-Chin, Naeem, Raeece, Abd El Ghany, Moataz, Hoh, Chee-Choong, Pain, Arnab, Nathan, Sheila
Published in Frontiers in cellular and infection microbiology (23.12.2022)
Published in Frontiers in cellular and infection microbiology (23.12.2022)
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The emergence of highly resistant and hypervirulent Klebsiella pneumoniae CC14 clone in a tertiary hospital over 8 years
Hala, Sharif, Malaikah, Mohammed, Huang, Jiayi, Bahitham, Wesam, Fallatah, Omniya, Zakri, Samer, Antony, Chakkiath Paul, Alshehri, Mohammed, Ghazzali, Raeece Naeem, Ben-Rached, Fathia, Alsahafi, Abdullah, Alsaedi, Asim, AlAhmadi, Ghadeer, Kaaki, Mai, Alazmi, Meshari, AlhajHussein, Baraa, Yaseen, Muhammad, Zowawi, Hosam M, Alghoribi, Majed F, Althaqafi, Abdulhakeem O, Al-Amri, Abdulfattah, Moradigaravand, Danesh, Pain, Arnab
Published in Genome medicine (18.04.2024)
Published in Genome medicine (18.04.2024)
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Influx of diverse, drug resistant and transmissible Plasmodium falciparum into a malaria-free setting in Qatar
Al-Rumhi, Abir, Al-Hashami, Zainab, Al-Hamidhi, Salama, Gadalla, Amal, Naeem, Raeece, Ranford-Cartwright, Lisa, Pain, Arnab, Sultan, Ali A, Babiker, Hamza A
Published in BMC infectious diseases (15.06.2020)
Published in BMC infectious diseases (15.06.2020)
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Identification of a novel conjugative plasmid in mycobacteria that requires both type IV and type VII secretion
Ummels, Roy, Abdallah, Abdallah M, Kuiper, Vincent, Aâjoud, Anouar, Sparrius, Marion, Naeem, Raeece, Spaink, Herman P, van Soolingen, Dick, Pain, Arnab, Bitter, Wilbert
Published in mBio (23.09.2014)
Published in mBio (23.09.2014)
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Comprehensive evaluation of Toxoplasma gondii VEG and Neospora caninum LIV genomes with tachyzoite stage transcriptome and proteome defines novel transcript features
Ramaprasad, Abhinay, Mourier, Tobias, Naeem, Raeece, Malas, Tareq B, Moussa, Ehab, Panigrahi, Aswini, Vermont, Sarah J, Otto, Thomas D, Wastling, Jonathan, Pain, Arnab
Published in PloS one (13.04.2015)
Published in PloS one (13.04.2015)
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Journal Article
SVAMP: sequence variation analysis, maps and phylogeny
Naeem, Raeece, Hidayah, Lailatul, Preston, Mark D, Clark, Taane G, Pain, Arnab
Published in Bioinformatics (Oxford, England) (01.08.2014)
Published in Bioinformatics (Oxford, England) (01.08.2014)
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The population structure of Vibrio cholerae from the Chandigarh Region of Northern India
Abd El Ghany, Moataz, Chander, Jagadish, Mutreja, Ankur, Rashid, Mamoon, Hill-Cawthorne, Grant A, Ali, Shahjahan, Naeem, Raeece, Thomson, Nicholas R, Dougan, Gordon, Pain, Arnab
Published in PLoS neglected tropical diseases (01.07.2014)
Published in PLoS neglected tropical diseases (01.07.2014)
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Journal Article
Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species
Ansari, Hifzur Rahman, Templeton, Thomas J., Subudhi, Amit Kumar, Ramaprasad, Abhinay, Tang, Jianxia, Lu, Feng, Naeem, Raeece, Hashish, Yasmeen, Oguike, Mary C., Benavente, Ernest Diez, Clark, Taane G., Sutherland, Colin J., Barnwell, John W., Culleton, Richard, Cao, Jun, Pain, Arnab
Published in International journal for parasitology (01.10.2016)
Published in International journal for parasitology (01.10.2016)
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Journal Article
Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites
Woo, Yong H, Ansari, Hifzur, Otto, Thomas D, Klinger, Christen M, Kolisko, Martin, Michálek, Jan, Saxena, Alka, Shanmugam, Dhanasekaran, Tayyrov, Annageldi, Veluchamy, Alaguraj, Ali, Shahjahan, Bernal, Axel, del Campo, Javier, Cihlář, Jaromír, Flegontov, Pavel, Gornik, Sebastian G, Hajdušková, Eva, Horák, Aleš, Janouškovec, Jan, Katris, Nicholas J, Mast, Fred D, Miranda-Saavedra, Diego, Mourier, Tobias, Naeem, Raeece, Nair, Mridul, Panigrahi, Aswini K, Rawlings, Neil D, Padron-Regalado, Eriko, Ramaprasad, Abhinay, Samad, Nadira, Tomčala, Aleš, Wilkes, Jon, Neafsey, Daniel E, Doerig, Christian, Bowler, Chris, Keeling, Patrick J, Roos, David S, Dacks, Joel B, Templeton, Thomas J, Waller, Ross F, Lukeš, Julius, Oborník, Miroslav, Pain, Arnab
Published in eLife (15.07.2015)
Published in eLife (15.07.2015)
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Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations
Abdallah, Abdallah M., Hill-Cawthorne, Grant A., Otto, Thomas D., Coll, Francesc, Guerra-Assunção, José Afonso, Gao, Ge, Naeem, Raeece, Ansari, Hifzur, Malas, Tareq B., Adroub, Sabir A., Verboom, Theo, Ummels, Roy, Zhang, Huoming, Panigrahi, Aswini Kumar, McNerney, Ruth, Brosch, Roland, Clark, Taane G., Behr, Marcel A., Bitter, Wilbert, Pain, Arnab
Published in Scientific reports (21.10.2015)
Published in Scientific reports (21.10.2015)
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Genomic and Phenotypic Analyses Reveal the Emergence of an Atypical Salmonella enterica Serovar Senftenberg Variant in China
Abd El Ghany, Moataz, Shi, Xiaolu, Li, Yinghui, Ansari, Hifzur R, Hill-Cawthorne, Grant A, Ho, Y S, Naeem, Raeece, Pickard, Derek, Klena, John D, Xu, Xuebing, Pain, Arnab, Hu, Qinghua
Published in Journal of clinical microbiology (01.08.2016)
Published in Journal of clinical microbiology (01.08.2016)
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The Population Structure of Vibrio cholerae from the Chandigarh Region of Northern India: e2981
Ghany, Moataz AbdEl, Chander, Jagadish, Mutreja, Ankur, Rashid, Mamoon, Hill-Cawthorne, Grant A, Ali, Shahjahan, Naeem, Raeece, Thomson, Nicholas R, Dougan, Gordon, Pain, Arnab
Published in PLoS neglected tropical diseases (01.07.2014)
Published in PLoS neglected tropical diseases (01.07.2014)
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Genome Sequence of a Multidrug-Resistant Strain of Stenotrophomonas maltophilia with Carbapenem Resistance, Isolated from King Abdullah Medical City, Makkah, Saudi Arabia
Abdel-Haleem, Alyaa M, Rchiad, Zineb, Khan, Babar K, Abdallah, Abdallah M, Naeem, Raeece, Nikhat Sheerin, Shalam, Solovyev, Victor, Ahmed, Abdalla, Pain, Arnab
Published in Genome announcements (Washington, DC) (15.10.2015)
Published in Genome announcements (Washington, DC) (15.10.2015)
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