Temporal and spatial heterogeneity of host response to SARS-CoV-2 pulmonary infection
Desai, Niyati, Neyaz, Azfar, Szabolcs, Annamaria, Shih, Angela R., Chen, Jonathan H., Thapar, Vishal, Nieman, Linda T., Solovyov, Alexander, Mehta, Arnav, Lieb, David J., Kulkarni, Anupriya S., Jaicks, Christopher, Xu, Katherine H., Raabe, Michael J., Pinto, Christopher J., Juric, Dejan, Chebib, Ivan, Colvin, Robert B., Kim, Arthur Y., Monroe, Robert, Warren, Sarah E., Danaher, Patrick, Reeves, Jason W., Gong, Jingjing, Rueckert, Erroll H., Greenbaum, Benjamin D., Hacohen, Nir, Lagana, Stephen M., Rivera, Miguel N., Sholl, Lynette M., Stone, James R., Ting, David T., Deshpande, Vikram
Published in Nature communications (09.12.2020)
Published in Nature communications (09.12.2020)
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Journal Article
Satellite repeat RNA expression in epithelial ovarian cancer associates with a tumor-immunosuppressive phenotype
Porter, Rebecca L, Sun, Siyu, Flores, Micayla N, Berzolla, Emily, You, Eunae, Phillips, Ildiko E, Kc, Neelima, Desai, Niyati, Tai, Eric C, Szabolcs, Annamaria, Lang, Evan R, Pankaj, Amaya, Raabe, Michael J, Thapar, Vishal, Xu, Katherine H, Nieman, Linda T, Rabe, Daniel C, Kolin, David L, Stover, Elizabeth H, Pepin, David, Stott, Shannon L, Deshpande, Vikram, Liu, Joyce F, Solovyov, Alexander, Matulonis, Ursula A, Greenbaum, Benjamin D, Ting, David T
Published in The Journal of clinical investigation (15.08.2022)
Published in The Journal of clinical investigation (15.08.2022)
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Spatial transcriptomics reveals distinct tissue niches linked with steroid responsiveness in acute gastrointestinal GVHD
Patel, Bidish K., Raabe, Michael J., Lang, Evan R., Song, Yuhui, Lu, Chenyue, Deshpande, Vikram, Nieman, Linda T., Aryee, Martin J., Chen, Yi-Bin, Ting, David T., DeFilipp, Zachariah
Published in Blood (23.11.2023)
Published in Blood (23.11.2023)
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Journal Article
Reverse Transcriptase Inhibition Disrupts Repeat Element Life Cycle in Colorectal Cancer
Rajurkar, Mihir, Parikh, Aparna R, Solovyov, Alexander, You, Eunae, Kulkarni, Anupriya S, Chu, Chong, Xu, Katherine H, Jaicks, Christopher, Taylor, Martin S, Wu, Connie, Alexander, Katherine A, Good, Charly R, Szabolcs, Annamaria, Gerstberger, Stefanie, Tran, Antuan V, Xu, Nova, Ebright, Richard Y, Van Seventer, Emily E, Vo, Kevin D, Tai, Eric C, Lu, Chenyue, Joseph-Chazan, Jasmin, Raabe, Michael J, Nieman, Linda T, Desai, Niyati, Arora, Kshitij S, Ligorio, Matteo, Thapar, Vishal, Cohen, Limor, Garden, Padric M, Senussi, Yasmeen, Zheng, Hui, Allen, Jill N, Blaszkowsky, Lawrence S, Clark, Jeffrey W, Goyal, Lipika, Wo, Jennifer Y, Ryan, David P, Corcoran, Ryan B, Deshpande, Vikram, Rivera, Miguel N, Aryee, Martin J, Hong, Theodore S, Berger, Shelley L, Walt, David R, Burns, Kathleen H, Park, Peter J, Greenbaum, Benjamin D, Ting, David T
Published in Cancer discovery (02.06.2022)
Published in Cancer discovery (02.06.2022)
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Disruption of cellular plasticity by repeat RNAs in human pancreatic cancer
You, Eunae, Danaher, Patrick, Lu, Chenyue, Sun, Siyu, Zou, Luli, Phillips, Ildiko E, Rojas, Alexandra S, Ho, Natalie I, Song, Yuhui, Raabe, Michael J, Xu, Katherine H, Richieri, Peter M, Li, Hao, Aston, Natalie, Porter, Rebecca L, Patel, Bidish K, Nieman, Linda T, Schurman, Nathan, Hudson, Briana M, North, Khrystyna, Church, Sarah E, Deshpande, Vikram, Liss, Andrew S, Kim, Tae K, Cui, Yi, Kim, Youngmi, Greenbaum, Benjamin D, Aryee, Martin J, Ting, David T
Published in Cell (01.10.2024)
Published in Cell (01.10.2024)
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655 Dissecting pancreatic cancer tumor-immune microenvironment crosstalk using spatial transcriptomics
Pankaj, Amaya, Mehta, Arnav, Raabe, Michael J, Koenig, Julie L, Patel, Bidish, Lang, Evan R, Kocher, Joshua, Xu, Katherine, Nieman, Linda, Kimmelman, Alec, Ryan, David, Hwang, William, Aryee, Martin, Hong, Theodore, Parikh, Aparna R, Ting, David
Published in Journal for immunotherapy of cancer (01.11.2023)
Published in Journal for immunotherapy of cancer (01.11.2023)
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Abstract PO016: Spatial transcriptomic profiling to characterize the tumor-vascular interactome of hepatocellular carcinoma
Franses, Joseph W, Raabe, Michael J, Pankaj, Amaya, Patel, Bidish, Coley, Avril, Bhan, Irun, Aryee, Martin, Ting, David T
Published in Clinical cancer research (01.09.2022)
Published in Clinical cancer research (01.09.2022)
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Abstract 1134: Dissecting pancreatic cancer tumor-immune microenvironment crosstalk using spatial transcriptomics
Pankaj, Amaya, Raabe, Michael J., Patel, Bidish K., Lang, Evan R., Kocher, Joshua R., Xu, Katherine H., Nieman, Linda T., Hwang, William L., Kimmelman, Alec C., Ryan, David P., Hong, Theodore S., Aryee, Martin J., Ting, David T.
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Published in Cancer research (Chicago, Ill.) (22.03.2024)
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Abstract C038: Repeat RNA dysregulation of cellular states in the pancreatic cancer microenvironment
You, Eunae, Zou, Luli, Danaher, Patrick, Phillips, Ildiko E., Raabe, Michael J., Patel, Bidish, Pankaj, Amaya, North, Khrystyna, Kim, Sean, Kim, Youngmi, Aryee, Martin, Ting, David T.
Published in Cancer research (Chicago, Ill.) (15.11.2022)
Published in Cancer research (Chicago, Ill.) (15.11.2022)
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Abstract B091: Spatial Transcriptomics Unveils Intraductal Papillary Mucinous Neoplasm Heterogeneity: From Novel Clusters to Immune Dynamics
Pankaj, Amaya, Raabe, Michael J, Song, Yuhui, Patel, Bidish K, Xu, Katherine, Kocher, Joshua R, Caldwell, Nicholas J, Ganci, Maria L, Nieman, Linda T, Mino-Kenudson, Mari, Deshpande, Vikram, Bardeesy, Nabeel, Fernandez-Del Castillo, Carlos, Aryee, Martin J, Ting, David T, Hernandez-Barco, Yasmin G
Published in Cancer research (Chicago, Ill.) (15.09.2024)
Published in Cancer research (Chicago, Ill.) (15.09.2024)
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Abstract A066: 5z-7-oxozeaenol as an epithelial mesenchymal transition plasticity inhibitor in PDAC
You, Eunae, Phillips, Ildiko Phillips E., Ebright, Richard Y., Desai, Niyati, Raabe, Michael J., Lang, Evan R., Nieman, Linda T., Hajizadeh, Soroush, Kreuzer, Johannes, Haas, Wilhelm, Ting, David T.
Published in Cancer research (Chicago, Ill.) (15.11.2022)
Published in Cancer research (Chicago, Ill.) (15.11.2022)
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Abstract PR004: Characterizing the effects of neoadjuvant therapy in PDAC
Pankaj, Amaya, Raabe, Michael J., Patel, Bidish, Lang, Evan R., Kocher, Joshua, Xu, Katherine H., Nieman, Linda T., Kimmelman, Alec C., Ryan, David P., Hong, Theodore S., Hwang, William L., Aryee, Martin, Ting, David T.
Published in Cancer research (Chicago, Ill.) (15.11.2022)
Published in Cancer research (Chicago, Ill.) (15.11.2022)
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